Wall clock time and date at job start Tue Mar 31 2020 05:36:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53004 * 109.46742 * 2 1 4 4 C 1.50697 * 109.46875 * 119.99735 * 2 1 3 5 5 O 1.21291 * 119.99800 * 239.99820 * 4 2 1 6 6 N 1.34779 * 120.00225 * 60.00531 * 4 2 1 7 7 C 1.47610 * 118.74428 * 0.02562 * 6 4 2 8 8 C 1.53798 * 111.29947 * 138.29749 * 7 6 4 9 9 C 1.51275 * 109.63143 * 319.95845 * 8 7 6 10 10 N 1.46200 * 109.09967 * 92.40929 * 9 8 7 11 11 C 1.46902 * 110.99998 * 144.76999 * 10 9 8 12 12 H 1.08995 * 109.47343 * 322.74986 * 11 10 9 13 13 C 1.52999 * 109.47018 * 202.74801 * 11 10 9 14 14 C 1.53005 * 109.46797 * 82.74732 * 11 10 9 15 15 C 1.50691 * 109.47187 * 293.77083 * 14 11 10 16 16 H 1.07997 * 120.00343 * 354.57835 * 15 14 11 17 17 C 1.37880 * 119.99857 * 174.58581 * 15 14 11 18 18 N 1.31513 * 119.99996 * 359.97438 * 17 15 14 19 19 Si 1.86809 * 119.99963 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.46998 * 59.99880 * 19 17 15 21 21 H 1.48494 * 109.47029 * 179.97438 * 19 17 15 22 22 H 1.48499 * 109.46912 * 299.99763 * 19 17 15 23 23 C 1.41446 * 116.34466 * 272.97217 * 10 9 8 24 24 C 1.44882 * 118.74577 * 180.02562 * 6 4 2 25 25 H 1.08989 * 109.47425 * 300.00169 * 1 2 3 26 26 H 1.08999 * 109.46796 * 60.00569 * 1 2 3 27 27 H 1.08999 * 109.46839 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47365 * 240.00252 * 2 1 3 29 29 H 1.09008 * 109.46646 * 179.97438 * 3 2 1 30 30 H 1.08999 * 109.47010 * 299.99299 * 3 2 1 31 31 H 1.08996 * 109.47439 * 60.00114 * 3 2 1 32 32 H 1.09001 * 109.11072 * 258.76788 * 7 6 4 33 33 H 1.08998 * 109.11550 * 17.82818 * 7 6 4 34 34 H 1.09004 * 109.44320 * 80.00665 * 8 7 6 35 35 H 1.08999 * 109.44587 * 199.94001 * 8 7 6 36 36 H 1.08998 * 109.53024 * 332.52494 * 9 8 7 37 37 H 1.08992 * 109.53479 * 212.29641 * 9 8 7 38 38 H 1.08994 * 109.47131 * 64.34840 * 13 11 10 39 39 H 1.08997 * 109.46775 * 184.34580 * 13 11 10 40 40 H 1.09003 * 109.47205 * 304.34761 * 13 11 10 41 41 H 1.09002 * 109.47059 * 53.77063 * 14 11 10 42 42 H 1.08999 * 109.46731 * 173.76794 * 14 11 10 43 43 H 0.97002 * 119.99802 * 180.02562 * 18 17 15 44 44 H 1.09002 * 109.38419 * 183.63700 * 23 10 9 45 45 H 1.09001 * 109.38561 * 303.43368 * 23 10 9 46 46 H 1.08995 * 109.43249 * 149.68433 * 24 6 4 47 47 H 1.09000 * 109.40411 * 29.78856 * 24 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0323 -0.7103 1.2305 5 8 2.7296 -0.1208 2.0288 6 7 1.7068 -2.0007 1.4438 7 6 0.8572 -2.6915 0.4539 8 6 1.3573 -4.1217 0.1897 9 6 2.8692 -4.1301 0.1382 10 7 3.3916 -4.4253 1.4714 11 6 4.6160 -5.2330 1.3900 12 1 4.5259 -5.9480 0.5723 13 6 4.8183 -5.9863 2.7062 14 6 5.8152 -4.3172 1.1369 15 6 5.6902 -3.6917 -0.2284 16 1 4.8884 -3.9898 -0.8876 17 6 6.5995 -2.7387 -0.6359 18 7 7.5756 -2.3753 0.1670 19 14 6.4450 -1.9638 -2.3287 20 1 5.1324 -1.2786 -2.4414 21 1 7.5367 -0.9760 -2.5224 22 1 6.5427 -3.0204 -3.3675 23 6 3.5705 -3.3192 2.3346 24 6 2.2041 -2.6569 2.6360 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 3.1300 1.4426 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6766 1.9564 0.8899 32 1 -0.1652 -2.7345 0.8292 33 1 0.8699 -2.1306 -0.4806 34 1 1.0179 -4.7785 0.9906 35 1 0.9604 -4.4749 -0.7620 36 1 3.2282 -3.1532 -0.1858 37 1 3.2058 -4.8940 -0.5625 38 1 4.0024 -6.6949 2.8485 39 1 5.7656 -6.5246 2.6748 40 1 4.8312 -5.2762 3.5331 41 1 5.8404 -3.5339 1.8945 42 1 6.7346 -4.9005 1.1865 43 1 8.2151 -1.7047 -0.1196 44 1 4.0220 -3.6574 3.2672 45 1 4.2267 -2.5908 1.8581 46 1 1.4933 -3.4198 2.9532 47 1 2.3249 -1.9208 3.4308 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000351492080.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:22 Heat of formation + Delta-G solvation = -50.516586 kcal Electronic energy + Delta-G solvation = -24907.854880 eV Core-core repulsion = 21703.830201 eV Total energy + Delta-G solvation = -3204.024679 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.64582 -39.82330 -37.02937 -35.65222 -34.73995 -33.62750 -32.40775 -29.43060 -28.84211 -28.17159 -26.62068 -25.19534 -24.82037 -22.65876 -21.89129 -20.57683 -19.58677 -18.42452 -18.15075 -17.40989 -17.03273 -16.63891 -16.34138 -15.90772 -15.60534 -15.22342 -14.85390 -14.48887 -14.29536 -13.98512 -13.80884 -13.72940 -13.44064 -13.19450 -13.11405 -13.04818 -12.88779 -12.73731 -12.61387 -12.52660 -12.37986 -12.11316 -12.08338 -12.00840 -11.84295 -11.61245 -11.46100 -11.27343 -10.93992 -10.62471 -10.58837 -9.55721 -8.84068 -8.21990 -6.29702 1.28686 1.31767 1.38674 1.66003 2.14697 2.34135 3.09290 3.21266 3.51377 3.89241 3.97586 4.03362 4.10207 4.20846 4.28186 4.33499 4.41938 4.51268 4.58903 4.65586 4.70976 4.73646 4.76952 4.81393 4.86088 4.92142 4.95577 5.00990 5.05584 5.08382 5.14248 5.24163 5.25846 5.29380 5.32494 5.34506 5.45422 5.50947 5.57777 5.78180 5.80008 6.20302 6.40971 6.46421 6.70747 6.85870 7.24466 7.37658 8.89819 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.012639 B = 0.008429 C = 0.006198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2214.847026 B = 3320.889467 C = 4516.485798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.116 4.116 3 C -0.130 4.130 4 C 0.499 3.501 5 O -0.594 6.594 6 N -0.601 5.601 7 C 0.100 3.900 8 C -0.125 4.125 9 C 0.077 3.923 10 N -0.527 5.527 11 C 0.091 3.909 12 H 0.068 0.932 13 C -0.129 4.129 14 C 0.001 3.999 15 C -0.521 4.521 16 H 0.071 0.929 17 C -0.002 4.002 18 N -0.936 5.936 19 Si 0.947 3.053 20 H -0.267 1.267 21 H -0.291 1.291 22 H -0.259 1.259 23 C 0.071 3.929 24 C 0.128 3.872 25 H 0.055 0.945 26 H 0.089 0.911 27 H 0.088 0.912 28 H 0.098 0.902 29 H 0.026 0.974 30 H 0.090 0.910 31 H 0.055 0.945 32 H 0.101 0.899 33 H 0.095 0.905 34 H 0.086 0.914 35 H 0.103 0.897 36 H 0.015 0.985 37 H 0.060 0.940 38 H 0.076 0.924 39 H 0.049 0.951 40 H 0.043 0.957 41 H -0.009 1.009 42 H -0.018 1.018 43 H 0.257 0.743 44 H 0.069 0.931 45 H -0.011 1.011 46 H 0.109 0.891 47 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.881 -1.593 -1.548 20.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.137 4.137 3 C -0.187 4.187 4 C 0.289 3.711 5 O -0.475 6.475 6 N -0.332 5.332 7 C -0.021 4.021 8 C -0.163 4.163 9 C -0.051 4.051 10 N -0.250 5.250 11 C -0.017 4.017 12 H 0.086 0.914 13 C -0.187 4.187 14 C -0.037 4.037 15 C -0.559 4.559 16 H 0.089 0.911 17 C -0.199 4.199 18 N -0.577 5.577 19 Si 0.772 3.228 20 H -0.192 1.192 21 H -0.217 1.217 22 H -0.184 1.184 23 C -0.060 4.060 24 C 0.004 3.996 25 H 0.074 0.926 26 H 0.108 0.892 27 H 0.107 0.893 28 H 0.116 0.884 29 H 0.045 0.955 30 H 0.108 0.892 31 H 0.074 0.926 32 H 0.119 0.881 33 H 0.113 0.887 34 H 0.105 0.895 35 H 0.122 0.878 36 H 0.034 0.966 37 H 0.078 0.922 38 H 0.094 0.906 39 H 0.068 0.932 40 H 0.062 0.938 41 H 0.009 0.991 42 H 0.000 1.000 43 H 0.066 0.934 44 H 0.087 0.913 45 H 0.007 0.993 46 H 0.127 0.873 47 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -19.740 -1.461 -0.918 19.815 hybrid contribution 2.035 1.246 -0.866 2.539 sum -17.705 -0.215 -1.784 17.796 Atomic orbital electron populations 1.22057 0.89682 1.04742 1.03644 1.21370 1.00126 0.97089 0.95135 1.21590 0.99831 0.94461 1.02849 1.21488 0.79051 0.82464 0.88096 1.90651 1.39895 1.67639 1.49320 1.47927 1.50931 1.10605 1.23752 1.22567 0.93870 0.93720 0.91906 1.21959 0.93911 0.96204 1.04258 1.21570 0.95440 0.99035 0.89025 1.58974 1.29899 1.22561 1.13596 1.21711 0.88212 0.94084 0.97698 0.91362 1.21750 1.01285 0.99561 0.96101 1.19670 0.93922 0.94362 0.95765 1.21709 1.11722 1.21192 1.01234 0.91056 1.25919 0.95275 0.97774 1.00978 1.70113 1.16690 1.32690 1.38219 0.85758 0.77850 0.78569 0.80595 1.19185 1.21688 1.18391 1.21440 0.96342 0.91763 0.96450 1.21468 0.94819 0.96403 0.86931 0.92591 0.89242 0.89299 0.88436 0.95495 0.89162 0.92622 0.88141 0.88715 0.89516 0.87824 0.96621 0.92163 0.90552 0.93151 0.93773 0.99061 1.00007 0.93431 0.91270 0.99310 0.87331 0.91692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.39 8.71 71.98 0.63 -1.76 16 2 C -0.12 -3.07 2.43 -11.54 -0.03 -3.10 16 3 C -0.13 -3.60 8.48 71.98 0.61 -2.99 16 4 C 0.50 17.66 7.04 87.66 0.62 18.28 16 5 O -0.59 -27.15 15.41 -3.06 -0.05 -27.19 16 6 N -0.60 -18.03 2.18 -817.83 -1.79 -19.82 16 7 C 0.10 2.02 4.46 86.44 0.39 2.41 16 8 C -0.12 -2.71 5.78 30.30 0.18 -2.53 16 9 C 0.08 2.60 3.46 85.87 0.30 2.90 16 10 N -0.53 -19.14 3.72 -886.18 -3.29 -22.43 16 11 C 0.09 3.69 2.48 44.92 0.11 3.81 16 12 H 0.07 2.73 7.41 -2.39 -0.02 2.71 16 13 C -0.13 -4.38 9.30 71.98 0.67 -3.71 16 14 C 0.00 0.06 3.96 29.85 0.12 0.17 16 15 C -0.52 -29.34 7.52 25.60 0.19 -29.15 16 16 H 0.07 3.75 5.11 -2.91 -0.01 3.74 16 17 C 0.00 -0.14 5.46 84.66 0.46 0.32 16 18 N -0.94 -60.09 13.29 21.45 0.28 -59.81 16 19 Si 0.95 45.66 29.54 68.60 2.03 47.68 16 20 H -0.27 -12.27 7.11 99.48 0.71 -11.57 16 21 H -0.29 -14.12 7.11 99.48 0.71 -13.41 16 22 H -0.26 -11.68 7.11 99.48 0.71 -10.98 16 23 C 0.07 2.83 4.14 87.92 0.36 3.19 16 24 C 0.13 4.10 5.52 87.30 0.48 4.58 16 25 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 26 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 27 H 0.09 1.15 4.61 -2.39 -0.01 1.14 16 28 H 0.10 2.55 7.41 -2.39 -0.02 2.53 16 29 H 0.03 0.91 8.10 -2.38 -0.02 0.89 16 30 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 31 H 0.05 1.56 8.10 -2.39 -0.02 1.54 16 32 H 0.10 1.35 7.55 -2.39 -0.02 1.34 16 33 H 0.09 1.71 4.95 -2.39 -0.01 1.70 16 34 H 0.09 1.77 7.98 -2.39 -0.02 1.75 16 35 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 36 H 0.02 0.65 6.24 -2.39 -0.01 0.63 16 37 H 0.06 2.09 6.51 -2.39 -0.02 2.08 16 38 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 39 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 40 H 0.04 1.52 6.40 -2.39 -0.02 1.51 16 41 H -0.01 -0.54 6.21 -2.39 -0.01 -0.56 16 42 H -0.02 -1.08 8.14 -2.39 -0.02 -1.10 16 43 H 0.26 15.81 8.31 -92.71 -0.77 15.04 16 44 H 0.07 2.75 6.15 -2.39 -0.01 2.74 16 45 H -0.01 -0.61 6.53 -2.39 -0.02 -0.62 16 46 H 0.11 2.75 8.11 -2.39 -0.02 2.73 16 47 H 0.06 2.28 7.28 -2.39 -0.02 2.26 16 Total: -1.00 -76.98 344.13 3.21 -73.78 By element: Atomic # 1 Polarization: 14.44 SS G_CDS: 0.94 Total: 15.38 kcal Atomic # 6 Polarization: -12.67 SS G_CDS: 5.08 Total: -7.58 kcal Atomic # 7 Polarization: -97.27 SS G_CDS: -4.79 Total: -102.06 kcal Atomic # 8 Polarization: -27.15 SS G_CDS: -0.05 Total: -27.19 kcal Atomic # 14 Polarization: 45.66 SS G_CDS: 2.03 Total: 47.68 kcal Total: -76.98 3.21 -73.78 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351492080.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.260 kcal (2) G-P(sol) polarization free energy of solvation -76.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.777 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds