Wall clock time and date at job start Tue Mar 31 2020 05:36:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53001 * 109.46832 * 2 1 4 4 C 1.50693 * 109.47236 * 120.00241 * 2 1 3 5 5 O 1.21283 * 120.00349 * 347.29220 * 4 2 1 6 6 N 1.34782 * 119.99753 * 167.28672 * 4 2 1 7 7 C 1.47605 * 118.74874 * 353.71436 * 6 4 2 8 8 C 1.53807 * 111.30125 * 138.31433 * 7 6 4 9 9 C 1.51212 * 109.63259 * 319.93295 * 8 7 6 10 10 N 1.46198 * 109.09342 * 92.42412 * 9 8 7 11 11 C 1.46903 * 110.99735 * 144.76916 * 10 9 8 12 12 H 1.08997 * 109.46913 * 317.07828 * 11 10 9 13 13 C 1.52994 * 109.47496 * 77.08198 * 11 10 9 14 14 C 1.53004 * 109.46798 * 197.08024 * 11 10 9 15 15 C 1.50702 * 109.47110 * 65.00218 * 14 11 10 16 16 H 1.08004 * 120.00277 * 359.97438 * 15 14 11 17 17 C 1.37878 * 119.99904 * 179.72610 * 15 14 11 18 18 N 1.31510 * 119.99959 * 0.26964 * 17 15 14 19 19 Si 1.86798 * 120.00073 * 180.27195 * 17 15 14 20 20 H 1.48498 * 109.47238 * 59.99602 * 19 17 15 21 21 H 1.48498 * 109.47313 * 179.97438 * 19 17 15 22 22 H 1.48502 * 109.46906 * 299.99692 * 19 17 15 23 23 C 1.41447 * 116.34475 * 272.96671 * 10 9 8 24 24 C 1.44889 * 118.74278 * 173.69069 * 6 4 2 25 25 H 1.08994 * 109.46940 * 299.99256 * 1 2 3 26 26 H 1.08995 * 109.47216 * 59.99819 * 1 2 3 27 27 H 1.09004 * 109.46721 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.46604 * 240.00459 * 2 1 3 29 29 H 1.09000 * 109.46588 * 176.49835 * 3 2 1 30 30 H 1.09004 * 109.47149 * 296.50263 * 3 2 1 31 31 H 1.09002 * 109.46915 * 56.50399 * 3 2 1 32 32 H 1.09001 * 109.11694 * 258.78715 * 7 6 4 33 33 H 1.09004 * 109.11604 * 17.85058 * 7 6 4 34 34 H 1.08996 * 109.44164 * 80.01038 * 8 7 6 35 35 H 1.09003 * 109.44215 * 199.94156 * 8 7 6 36 36 H 1.09002 * 109.54193 * 332.54141 * 9 8 7 37 37 H 1.08992 * 109.53229 * 212.31179 * 9 8 7 38 38 H 1.08995 * 109.47408 * 180.02562 * 13 11 10 39 39 H 1.09008 * 109.46989 * 300.00026 * 13 11 10 40 40 H 1.08997 * 109.47341 * 59.99892 * 13 11 10 41 41 H 1.08996 * 109.47231 * 304.99924 * 14 11 10 42 42 H 1.08999 * 109.46646 * 184.99680 * 14 11 10 43 43 H 0.97003 * 120.00292 * 180.02562 * 18 17 15 44 44 H 1.08999 * 109.38254 * 183.63958 * 23 10 9 45 45 H 1.08998 * 109.38683 * 303.32072 * 23 10 9 46 46 H 1.09003 * 109.43345 * 149.66558 * 24 6 4 47 47 H 1.09000 * 109.40441 * 29.77397 * 24 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 8 1.2686 -0.9670 2.1368 6 7 3.3306 -1.0608 1.3234 7 6 4.2051 -0.8630 0.1508 8 6 5.5783 -0.3080 0.5653 9 6 5.4007 0.7270 1.6533 10 7 5.5126 0.0745 2.9568 11 6 6.1638 0.9578 3.9335 12 1 7.0154 1.4516 3.4655 13 6 5.1641 2.0116 4.4141 14 6 6.6463 0.1308 5.1269 15 6 7.7207 -0.8243 4.6746 16 1 8.0284 -0.8401 3.6395 17 6 8.3146 -1.6743 5.5834 18 7 7.9397 -1.6553 6.8438 19 14 9.6518 -2.8527 5.0244 20 1 10.7877 -2.0807 4.4598 21 1 10.1243 -3.6513 6.1838 22 1 9.1067 -3.7628 3.9851 23 6 4.3230 -0.4774 3.4868 24 6 3.8145 -1.6167 2.5708 25 1 -0.3633 0.5137 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 3.1282 1.4431 0.0628 30 1 1.7287 1.9380 -0.9197 31 1 1.6263 1.9741 0.8570 32 1 4.3442 -1.8180 -0.3558 33 1 3.7292 -0.1622 -0.5352 34 1 6.2016 -1.1216 0.9361 35 1 6.0589 0.1529 -0.2978 36 1 4.4177 1.1888 1.5603 37 1 6.1733 1.4900 1.5601 38 1 5.6473 2.6672 5.1384 39 1 4.8203 2.6008 3.5639 40 1 4.3125 1.5178 4.8821 41 1 5.8099 -0.4327 5.5404 42 1 7.0493 0.7959 5.8906 43 1 8.3577 -2.2530 7.4832 44 1 4.5206 -0.8746 4.4824 45 1 3.5619 0.3000 3.5537 46 1 4.6309 -2.3095 2.3665 47 1 3.0038 -2.1483 3.0691 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000351492081.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:25 Heat of formation + Delta-G solvation = -34.336857 kcal Electronic energy + Delta-G solvation = -24354.640618 eV Core-core repulsion = 21151.317545 eV Total energy + Delta-G solvation = -3203.323073 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.51130 -38.41096 -35.73335 -34.66764 -32.93843 -32.28600 -30.84527 -27.76781 -27.32273 -27.10297 -25.73822 -23.83351 -23.04834 -21.52650 -20.73426 -19.09628 -18.21714 -17.30638 -16.16129 -16.01228 -15.70932 -15.27143 -15.09465 -14.52500 -14.27121 -13.94130 -13.60272 -13.27821 -12.96587 -12.81870 -12.64108 -12.36856 -12.13894 -12.03049 -11.87013 -11.69940 -11.60901 -11.40428 -11.26438 -11.18947 -11.09359 -10.79040 -10.76255 -10.56043 -10.51031 -10.24758 -9.91652 -9.50462 -9.16512 -8.96834 -8.43703 -8.24781 -7.32645 -5.88019 -3.86015 2.71234 3.15434 3.39763 3.44407 3.46684 4.38676 4.52523 4.56436 4.69222 4.84231 4.89865 5.04431 5.16699 5.28556 5.42145 5.48303 5.49598 5.53682 5.62508 5.65213 5.71045 5.73973 5.81942 5.85235 5.90084 5.94012 5.99651 6.04042 6.04957 6.09980 6.18474 6.36683 6.38889 6.48554 6.60294 6.70598 6.87969 7.02030 7.49170 7.59153 7.74025 8.06015 8.11773 8.22135 8.31202 8.58754 9.19261 9.75388 11.23919 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.023929 B = 0.004707 C = 0.004577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1169.867187 B = 5947.256470 C = 6116.045418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.116 4.116 3 C -0.147 4.147 4 C 0.510 3.490 5 O -0.543 6.543 6 N -0.602 5.602 7 C 0.104 3.896 8 C -0.134 4.134 9 C 0.073 3.927 10 N -0.537 5.537 11 C 0.095 3.905 12 H 0.067 0.933 13 C -0.181 4.181 14 C 0.029 3.971 15 C -0.489 4.489 16 H 0.059 0.941 17 C 0.051 3.949 18 N -0.903 5.903 19 Si 0.889 3.111 20 H -0.280 1.280 21 H -0.291 1.291 22 H -0.279 1.279 23 C 0.068 3.932 24 C 0.114 3.886 25 H 0.064 0.936 26 H 0.058 0.942 27 H 0.057 0.943 28 H 0.091 0.909 29 H 0.067 0.933 30 H 0.066 0.934 31 H 0.060 0.940 32 H 0.062 0.938 33 H 0.081 0.919 34 H 0.087 0.913 35 H 0.072 0.928 36 H 0.030 0.970 37 H 0.065 0.935 38 H 0.054 0.946 39 H 0.035 0.965 40 H 0.052 0.948 41 H 0.019 0.981 42 H 0.017 0.983 43 H 0.258 0.742 44 H 0.097 0.903 45 H 0.015 0.985 46 H 0.085 0.915 47 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.042 5.066 -16.274 19.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.138 4.138 3 C -0.205 4.205 4 C 0.298 3.702 5 O -0.420 6.420 6 N -0.335 5.335 7 C -0.019 4.019 8 C -0.173 4.173 9 C -0.055 4.055 10 N -0.261 5.261 11 C -0.012 4.012 12 H 0.086 0.914 13 C -0.240 4.240 14 C -0.008 4.008 15 C -0.528 4.528 16 H 0.077 0.923 17 C -0.148 4.148 18 N -0.544 5.544 19 Si 0.718 3.282 20 H -0.206 1.206 21 H -0.217 1.217 22 H -0.204 1.204 23 C -0.062 4.062 24 C -0.009 4.009 25 H 0.083 0.917 26 H 0.077 0.923 27 H 0.077 0.923 28 H 0.109 0.891 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.079 0.921 32 H 0.080 0.920 33 H 0.099 0.901 34 H 0.106 0.894 35 H 0.091 0.909 36 H 0.048 0.952 37 H 0.083 0.917 38 H 0.074 0.926 39 H 0.054 0.946 40 H 0.071 0.929 41 H 0.037 0.963 42 H 0.036 0.964 43 H 0.067 0.933 44 H 0.115 0.885 45 H 0.033 0.967 46 H 0.104 0.896 47 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -10.117 4.453 -15.694 19.196 hybrid contribution 0.389 -0.078 -0.135 0.419 sum -9.728 4.375 -15.828 19.087 Atomic orbital electron populations 1.21609 0.92759 1.02504 1.02059 1.21311 0.98101 0.97400 0.96953 1.21891 1.01842 0.94020 1.02725 1.20719 0.82028 0.78740 0.88755 1.90674 1.55377 1.54693 1.41251 1.47897 1.08775 1.62597 1.14186 1.22124 0.91873 1.00822 0.87074 1.21915 0.95860 1.00804 0.98671 1.21464 0.99388 0.94973 0.89643 1.58273 1.26510 1.38725 1.02544 1.21903 0.93874 0.91112 0.94331 0.91438 1.22511 1.01005 1.00057 1.00402 1.19232 0.96299 0.94375 0.90937 1.21094 1.18457 1.18450 0.94765 0.92302 1.25000 0.97256 0.97602 0.94969 1.69950 1.43131 1.39076 1.02232 0.86710 0.82419 0.81242 0.77838 1.20583 1.21699 1.20446 1.21606 0.89752 0.95622 0.99191 1.21698 0.99378 0.96296 0.83537 0.91740 0.92281 0.92338 0.89110 0.91459 0.91526 0.92061 0.91977 0.90123 0.89436 0.90922 0.95193 0.91656 0.92643 0.94589 0.92918 0.96254 0.96445 0.93264 0.88544 0.96695 0.89621 0.89897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.31 8.57 37.16 0.32 -0.99 16 2 C -0.12 -1.19 2.38 -91.77 -0.22 -1.41 16 3 C -0.15 -1.34 8.77 37.16 0.33 -1.01 16 4 C 0.51 7.31 6.85 -10.99 -0.08 7.24 16 5 O -0.54 -9.87 15.39 5.55 0.09 -9.78 16 6 N -0.60 -8.31 2.18 -172.45 -0.38 -8.68 16 7 C 0.10 1.11 5.41 -3.02 -0.02 1.09 16 8 C -0.13 -1.61 5.78 -27.21 -0.16 -1.77 16 9 C 0.07 1.06 4.76 -5.11 -0.02 1.03 16 10 N -0.54 -9.68 3.48 -231.52 -0.81 -10.49 16 11 C 0.10 1.89 2.16 -67.71 -0.15 1.74 16 12 H 0.07 1.35 7.57 -51.93 -0.39 0.96 16 13 C -0.18 -3.17 8.54 37.15 0.32 -2.85 16 14 C 0.03 0.71 4.36 -27.88 -0.12 0.59 16 15 C -0.49 -13.34 8.84 -34.44 -0.30 -13.64 16 16 H 0.06 1.59 7.74 -52.48 -0.41 1.18 16 17 C 0.05 1.45 5.46 -17.82 -0.10 1.35 16 18 N -0.90 -27.02 13.29 55.43 0.74 -26.28 16 19 Si 0.89 21.73 29.54 -169.99 -5.02 16.71 16 20 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 21 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 22 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 23 C 0.07 1.24 4.36 -5.74 -0.03 1.22 16 24 C 0.11 1.86 5.56 -3.97 -0.02 1.84 16 25 H 0.06 0.73 7.96 -51.93 -0.41 0.32 16 26 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.09 0.75 7.06 -51.93 -0.37 0.39 16 29 H 0.07 0.62 4.80 -51.93 -0.25 0.37 16 30 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.08 0.69 4.32 -51.93 -0.22 0.46 16 34 H 0.09 1.26 7.98 -51.93 -0.41 0.85 16 35 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 36 H 0.03 0.43 5.80 -51.93 -0.30 0.12 16 37 H 0.06 0.92 7.36 -51.93 -0.38 0.54 16 38 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 39 H 0.03 0.56 7.78 -51.92 -0.40 0.16 16 40 H 0.05 0.95 6.61 -51.93 -0.34 0.61 16 41 H 0.02 0.52 6.12 -51.93 -0.32 0.20 16 42 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 43 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 44 H 0.10 2.02 5.82 -51.93 -0.30 1.72 16 45 H 0.02 0.28 6.82 -51.93 -0.35 -0.07 16 46 H 0.09 1.42 8.11 -51.93 -0.42 1.00 16 47 H 0.08 1.42 7.20 -51.93 -0.37 1.05 16 LS Contribution 349.52 15.07 5.27 5.27 Total: -1.00 -31.27 349.52 -8.55 -39.81 By element: Atomic # 1 Polarization: 7.20 SS G_CDS: -8.18 Total: -0.99 kcal Atomic # 6 Polarization: -5.32 SS G_CDS: -0.25 Total: -5.57 kcal Atomic # 7 Polarization: -45.01 SS G_CDS: -0.45 Total: -45.45 kcal Atomic # 8 Polarization: -9.87 SS G_CDS: 0.09 Total: -9.78 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -31.27 -8.55 -39.81 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351492081.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.476 kcal (2) G-P(sol) polarization free energy of solvation -31.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.813 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds