Wall clock time and date at job start Tue Mar 31 2020 05:36:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.47509 * 2 1 4 4 C 1.52999 * 109.47220 * 239.99904 * 2 1 3 5 5 C 1.50701 * 109.47044 * 175.00431 * 4 2 1 6 6 H 1.07998 * 120.00331 * 359.97438 * 5 4 2 7 7 C 1.37876 * 119.99913 * 179.72642 * 5 4 2 8 8 N 1.31521 * 119.99929 * 359.97438 * 7 5 4 9 9 Si 1.86794 * 120.00141 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.47187 * 59.99933 * 9 7 5 11 11 H 1.48504 * 109.47315 * 179.97438 * 9 7 5 12 12 H 1.48495 * 109.47182 * 299.99795 * 9 7 5 13 13 N 1.46908 * 109.46932 * 119.99850 * 2 1 3 14 14 C 1.46899 * 110.99910 * 59.30128 * 13 2 1 15 15 C 1.53240 * 109.33758 * 172.74521 * 14 13 2 16 16 N 1.47075 * 108.52115 * 53.82875 * 15 14 13 17 17 C 1.34788 * 120.87906 * 128.83520 * 16 15 14 18 18 O 1.21279 * 119.99491 * 174.92516 * 17 16 15 19 19 C 1.50690 * 120.00051 * 354.92769 * 17 16 15 20 20 C 1.52991 * 109.47248 * 180.91807 * 19 17 16 21 21 C 1.53008 * 109.47213 * 300.91640 * 19 17 16 22 22 C 1.52997 * 109.47313 * 60.91553 * 19 17 16 23 23 C 1.47077 * 118.24077 * 308.81672 * 16 15 14 24 24 C 1.46897 * 110.99905 * 294.99797 * 13 2 1 25 25 H 1.09000 * 109.47509 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46963 * 300.00170 * 1 2 3 27 27 H 1.08995 * 109.47010 * 59.99805 * 1 2 3 28 28 H 1.08988 * 109.47084 * 54.99962 * 4 2 1 29 29 H 1.09002 * 109.46691 * 294.99690 * 4 2 1 30 30 H 0.96995 * 120.00006 * 180.02562 * 8 7 5 31 31 H 1.08996 * 109.49308 * 292.70399 * 14 13 2 32 32 H 1.09001 * 109.49236 * 52.78557 * 14 13 2 33 33 H 1.09003 * 109.62898 * 294.11641 * 15 14 13 34 34 H 1.09000 * 109.62630 * 173.54128 * 15 14 13 35 35 H 1.08993 * 109.47399 * 59.99918 * 20 19 17 36 36 H 1.09005 * 109.47244 * 179.97438 * 20 19 17 37 37 H 1.08998 * 109.47196 * 299.99969 * 20 19 17 38 38 H 1.09004 * 109.46792 * 42.86033 * 21 19 17 39 39 H 1.08999 * 109.47120 * 162.85512 * 21 19 17 40 40 H 1.08996 * 109.47174 * 282.86097 * 21 19 17 41 41 H 1.08998 * 109.47348 * 66.98436 * 22 19 17 42 42 H 1.09001 * 109.47692 * 186.98326 * 22 19 17 43 43 H 1.09001 * 109.47281 * 306.98628 * 22 19 17 44 44 H 1.09007 * 109.62789 * 291.47414 * 23 16 15 45 45 H 1.09002 * 109.62982 * 170.89411 * 23 16 15 46 46 H 1.09002 * 109.49625 * 307.21500 * 24 13 2 47 47 H 1.08998 * 109.49451 * 67.27199 * 24 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5419 -0.6150 -1.3126 6 1 4.0789 -0.0856 -0.5395 7 6 4.2309 -1.1980 -2.3549 8 7 3.5773 -1.8473 -3.2936 9 14 6.0924 -1.0657 -2.4339 10 1 6.6847 -1.6854 -1.2213 11 1 6.5881 -1.7721 -3.6425 12 1 6.4846 0.3650 -2.5005 13 7 2.0196 -0.6925 1.1995 14 6 1.5350 -2.0786 1.2419 15 6 2.2093 -2.8167 2.4032 16 7 1.9932 -2.0443 3.6360 17 6 1.5020 -2.6336 4.7443 18 8 1.4164 -2.0049 5.7779 19 6 1.0594 -4.0733 4.6991 20 6 0.5260 -4.4863 6.0723 21 6 -0.0456 -4.2346 3.6532 22 6 2.2484 -4.9609 4.3258 23 6 2.3276 -0.6121 3.6276 24 6 1.6487 0.0392 2.4181 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 1.6054 -0.2618 -2.1368 29 1 1.7516 -1.7715 -1.2054 30 1 4.0620 -2.2578 -4.0266 31 1 0.4547 -2.0819 1.3871 32 1 1.7778 -2.5776 0.3037 33 1 3.2783 -2.9054 2.2093 34 1 1.7704 -3.8086 2.5108 35 1 -0.3210 -3.8540 6.3382 36 1 0.2055 -5.5276 6.0394 37 1 1.3132 -4.3714 6.8174 38 1 0.2162 -3.6703 2.7581 39 1 -0.1543 -5.2890 3.3991 40 1 -0.9858 -3.8593 4.0571 41 1 2.9827 -4.9423 5.1311 42 1 1.9042 -5.9836 4.1717 43 1 2.7054 -4.5893 3.4087 44 1 3.4080 -0.4888 3.5514 45 1 1.9669 -0.1465 4.5448 46 1 1.9739 1.0761 2.3330 47 1 0.5668 0.0068 2.5467 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000351619932.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:49 Heat of formation + Delta-G solvation = -23.218118 kcal Electronic energy + Delta-G solvation = -24232.570747 eV Core-core repulsion = 21029.729819 eV Total energy + Delta-G solvation = -3202.840928 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.68666 -38.35990 -35.93846 -35.22883 -32.74439 -31.08485 -30.53628 -27.53308 -27.48703 -27.23599 -26.52121 -23.72075 -23.21857 -22.61428 -20.48586 -19.38510 -18.10217 -16.63366 -16.24774 -16.04137 -15.39847 -15.14048 -14.84514 -14.50497 -14.25435 -14.12269 -13.86673 -13.62674 -13.07003 -12.68797 -12.50064 -12.29283 -12.13699 -12.08021 -11.92393 -11.88720 -11.71955 -11.69926 -11.31178 -11.24194 -11.08483 -10.91791 -10.65827 -10.61331 -10.47233 -10.37059 -9.95633 -9.44898 -9.24323 -9.05052 -8.52785 -8.30378 -7.56529 -5.94055 -3.92365 2.71207 3.09336 3.37433 3.41692 3.45188 4.36687 4.41214 4.52366 4.63863 4.75729 5.00955 5.18476 5.22959 5.34403 5.40282 5.43250 5.48456 5.49311 5.58803 5.59611 5.64403 5.67011 5.73771 5.75224 5.84847 5.89827 5.91966 5.95185 6.00097 6.07619 6.09863 6.17081 6.26317 6.33449 6.47952 6.57258 6.70744 6.89323 7.40921 7.55505 7.60210 7.80959 7.92644 8.06842 8.26518 8.51556 9.13657 9.69960 11.17632 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.020026 B = 0.004809 C = 0.004511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1397.867925 B = 5820.750713 C = 6206.173134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.086 3.914 3 H 0.072 0.928 4 C 0.029 3.971 5 C -0.493 4.493 6 H 0.060 0.940 7 C 0.052 3.948 8 N -0.903 5.903 9 Si 0.889 3.111 10 H -0.278 1.278 11 H -0.291 1.291 12 H -0.279 1.279 13 N -0.509 5.509 14 C 0.039 3.961 15 C 0.090 3.910 16 N -0.605 5.605 17 C 0.524 3.476 18 O -0.552 6.552 19 C -0.086 4.086 20 C -0.124 4.124 21 C -0.157 4.157 22 C -0.159 4.159 23 C 0.117 3.883 24 C 0.039 3.961 25 H 0.050 0.950 26 H 0.040 0.960 27 H 0.056 0.944 28 H 0.019 0.981 29 H 0.020 0.980 30 H 0.258 0.742 31 H 0.029 0.971 32 H 0.105 0.895 33 H 0.081 0.919 34 H 0.104 0.896 35 H 0.059 0.941 36 H 0.059 0.941 37 H 0.060 0.940 38 H 0.075 0.925 39 H 0.069 0.931 40 H 0.060 0.940 41 H 0.060 0.940 42 H 0.068 0.932 43 H 0.078 0.922 44 H 0.074 0.926 45 H 0.087 0.913 46 H 0.081 0.919 47 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.482 -4.806 13.157 15.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.021 4.021 3 H 0.090 0.910 4 C -0.008 4.008 5 C -0.531 4.531 6 H 0.078 0.922 7 C -0.147 4.147 8 N -0.544 5.544 9 Si 0.718 3.282 10 H -0.204 1.204 11 H -0.217 1.217 12 H -0.205 1.205 13 N -0.233 5.233 14 C -0.090 4.090 15 C -0.032 4.032 16 N -0.338 5.338 17 C 0.312 3.688 18 O -0.430 6.430 19 C -0.089 4.089 20 C -0.181 4.181 21 C -0.214 4.214 22 C -0.216 4.216 23 C -0.005 4.005 24 C -0.090 4.090 25 H 0.069 0.931 26 H 0.059 0.941 27 H 0.075 0.925 28 H 0.037 0.963 29 H 0.038 0.962 30 H 0.068 0.932 31 H 0.047 0.953 32 H 0.123 0.877 33 H 0.099 0.901 34 H 0.122 0.878 35 H 0.078 0.922 36 H 0.078 0.922 37 H 0.079 0.921 38 H 0.094 0.906 39 H 0.088 0.912 40 H 0.079 0.921 41 H 0.079 0.921 42 H 0.087 0.913 43 H 0.097 0.903 44 H 0.092 0.908 45 H 0.105 0.895 46 H 0.099 0.901 47 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -5.972 -4.572 13.514 15.466 hybrid contribution 0.181 0.104 -0.230 0.311 sum -5.791 -4.468 13.284 15.164 Atomic orbital electron populations 1.22519 0.99739 1.01230 1.00779 1.21943 0.90043 0.98544 0.91589 0.91018 1.19233 0.96442 0.95256 0.89853 1.21126 0.91680 1.33086 1.07245 0.92161 1.24991 0.97979 0.95800 0.95942 1.69949 1.35355 1.36515 1.12579 0.86702 0.86344 0.78051 0.77096 1.20394 1.21666 1.20501 1.62063 1.59111 1.01054 1.01036 1.22549 0.95945 0.91081 0.99398 1.22556 1.02229 0.95403 0.82986 1.48161 1.63379 1.10297 1.11969 1.20569 0.76562 0.88883 0.82819 1.90642 1.56054 1.65881 1.30404 1.20743 0.97330 0.92345 0.98457 1.21645 1.01535 1.00635 0.94332 1.22231 0.97509 1.03070 0.98616 1.22302 0.96871 0.99450 1.03025 1.21709 1.00445 0.79945 0.98417 1.22464 0.97383 0.98376 0.90777 0.93050 0.94130 0.92450 0.96280 0.96199 0.93220 0.95324 0.87697 0.90124 0.87797 0.92169 0.92175 0.92089 0.90610 0.91245 0.92118 0.92096 0.91328 0.90320 0.90817 0.89511 0.90073 0.95186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.02 8.51 37.16 0.32 -2.70 16 2 C 0.09 1.66 2.29 -67.71 -0.16 1.50 16 3 H 0.07 1.42 8.07 -51.93 -0.42 1.00 16 4 C 0.03 0.70 4.27 -27.88 -0.12 0.58 16 5 C -0.49 -13.15 8.84 -34.44 -0.30 -13.45 16 6 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16 7 C 0.05 1.45 5.46 -17.82 -0.10 1.35 16 8 N -0.90 -26.18 13.29 55.43 0.74 -25.45 16 9 Si 0.89 21.39 29.54 -169.99 -5.02 16.37 16 10 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 11 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 12 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 13 N -0.51 -8.98 4.33 -226.34 -0.98 -9.96 16 14 C 0.04 0.62 4.52 -3.70 -0.02 0.61 16 15 C 0.09 1.25 4.02 -3.60 -0.01 1.23 16 16 N -0.61 -8.71 2.98 -172.46 -0.51 -9.22 16 17 C 0.52 7.65 6.49 -10.98 -0.07 7.58 16 18 O -0.55 -9.75 15.46 5.56 0.09 -9.66 16 19 C -0.09 -0.96 0.75 -155.67 -0.12 -1.08 16 20 C -0.12 -1.31 7.69 37.15 0.29 -1.02 16 21 C -0.16 -1.57 8.09 37.16 0.30 -1.27 16 22 C -0.16 -1.56 8.08 37.16 0.30 -1.26 16 23 C 0.12 1.72 6.58 -3.60 -0.02 1.70 16 24 C 0.04 0.59 5.14 -3.70 -0.02 0.57 16 25 H 0.05 0.83 6.56 -51.93 -0.34 0.49 16 26 H 0.04 0.60 6.69 -51.93 -0.35 0.26 16 27 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 28 H 0.02 0.49 8.14 -51.94 -0.42 0.07 16 29 H 0.02 0.50 6.02 -51.93 -0.31 0.18 16 30 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 31 H 0.03 0.44 6.03 -51.93 -0.31 0.13 16 32 H 0.11 1.93 5.87 -51.93 -0.31 1.62 16 33 H 0.08 1.19 8.11 -51.93 -0.42 0.77 16 34 H 0.10 1.19 2.96 -51.93 -0.15 1.04 16 35 H 0.06 0.68 8.10 -51.93 -0.42 0.26 16 36 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.06 0.69 8.09 -51.93 -0.42 0.27 16 38 H 0.08 0.83 4.23 -51.93 -0.22 0.61 16 39 H 0.07 0.57 7.93 -51.93 -0.41 0.15 16 40 H 0.06 0.61 8.02 -51.93 -0.42 0.19 16 41 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 42 H 0.07 0.54 8.01 -51.93 -0.42 0.13 16 43 H 0.08 0.80 4.62 -51.93 -0.24 0.56 16 44 H 0.07 1.10 8.14 -51.92 -0.42 0.67 16 45 H 0.09 1.28 7.10 -51.93 -0.37 0.91 16 46 H 0.08 1.17 8.05 -51.93 -0.42 0.75 16 47 H 0.03 0.46 6.81 -51.93 -0.35 0.10 16 LS Contribution 345.66 15.07 5.21 5.21 Total: -1.00 -30.27 345.66 -8.17 -38.44 By element: Atomic # 1 Polarization: 7.87 SS G_CDS: -7.95 Total: -0.08 kcal Atomic # 6 Polarization: -5.91 SS G_CDS: 0.26 Total: -5.65 kcal Atomic # 7 Polarization: -43.87 SS G_CDS: -0.76 Total: -44.62 kcal Atomic # 8 Polarization: -9.75 SS G_CDS: 0.09 Total: -9.66 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -30.27 -8.17 -38.44 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351619932.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.224 kcal (2) G-P(sol) polarization free energy of solvation -30.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.442 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds