Wall clock time and date at job start Tue Mar 31 2020 05:36:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09008 * 109.47429 * 2 1 4 4 C 1.52998 * 109.47405 * 119.99870 * 2 1 3 5 5 C 1.50697 * 109.47490 * 184.99602 * 4 2 1 6 6 H 1.08004 * 119.99840 * 0.02562 * 5 4 2 7 7 C 1.37876 * 120.00312 * 179.97438 * 5 4 2 8 8 N 1.31511 * 120.00321 * 180.02562 * 7 5 4 9 9 Si 1.86802 * 119.99786 * 0.02562 * 7 5 4 10 10 H 1.48507 * 109.47006 * 90.00092 * 9 7 5 11 11 H 1.48502 * 109.47043 * 209.99864 * 9 7 5 12 12 H 1.48497 * 109.47227 * 330.00130 * 9 7 5 13 13 N 1.46903 * 109.47045 * 240.00106 * 2 1 3 14 14 C 1.46898 * 110.99833 * 305.69671 * 13 2 1 15 15 C 1.53242 * 109.33652 * 187.25513 * 14 13 2 16 16 N 1.47083 * 108.52071 * 306.16919 * 15 14 13 17 17 C 1.34772 * 120.87746 * 231.16514 * 16 15 14 18 18 O 1.21280 * 120.00466 * 354.95849 * 17 16 15 19 19 C 1.50704 * 119.99561 * 174.95853 * 17 16 15 20 20 C 1.53007 * 109.47230 * 180.98114 * 19 17 16 21 21 C 1.52994 * 109.47233 * 300.97973 * 19 17 16 22 22 C 1.53001 * 109.47381 * 60.98415 * 19 17 16 23 23 C 1.47074 * 118.23980 * 51.19035 * 16 15 14 24 24 C 1.46901 * 110.99936 * 70.00117 * 13 2 1 25 25 H 1.08997 * 109.47006 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.46882 * 300.00354 * 1 2 3 27 27 H 1.09003 * 109.46892 * 59.99597 * 1 2 3 28 28 H 1.08997 * 109.47037 * 305.00017 * 4 2 1 29 29 H 1.09001 * 109.46756 * 64.99938 * 4 2 1 30 30 H 0.97002 * 120.00519 * 179.97438 * 8 7 5 31 31 H 1.08993 * 109.49331 * 67.29590 * 14 13 2 32 32 H 1.09001 * 109.49461 * 307.21128 * 14 13 2 33 33 H 1.09004 * 109.62551 * 186.46063 * 15 14 13 34 34 H 1.08996 * 109.62946 * 65.88075 * 15 14 13 35 35 H 1.09002 * 109.46760 * 59.99988 * 20 19 17 36 36 H 1.08991 * 109.47447 * 180.02562 * 20 19 17 37 37 H 1.09005 * 109.46989 * 300.00364 * 20 19 17 38 38 H 1.09008 * 109.46901 * 43.11587 * 21 19 17 39 39 H 1.09000 * 109.47287 * 163.11534 * 21 19 17 40 40 H 1.08995 * 109.47692 * 283.11521 * 21 19 17 41 41 H 1.09003 * 109.46957 * 67.13497 * 22 19 17 42 42 H 1.08997 * 109.47433 * 187.13973 * 22 19 17 43 43 H 1.09002 * 109.46987 * 307.14050 * 22 19 17 44 44 H 1.09001 * 109.62895 * 68.51631 * 23 16 15 45 45 H 1.08992 * 109.63171 * 188.91059 * 23 16 15 46 46 H 1.09003 * 109.49512 * 52.78877 * 24 13 2 47 47 H 1.08991 * 109.51443 * 292.71635 * 24 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 3.5419 -0.6150 1.3127 6 1 4.0790 -0.0856 0.5395 7 6 4.2304 -1.1926 2.3582 8 7 5.5410 -1.0995 2.4139 9 14 3.3015 -2.1077 3.6959 10 1 3.1709 -3.5379 3.3181 11 1 4.0448 -2.0000 4.9770 12 1 1.9504 -1.5126 3.8560 13 7 2.0196 -0.6925 -1.1995 14 6 1.4406 -2.0385 -1.3034 15 6 2.1096 -2.7908 -2.4588 16 7 2.0006 -1.9712 -3.6752 17 6 1.5162 -2.4929 -4.8196 18 8 1.2491 -3.6743 -4.8823 19 6 1.3066 -1.6082 -6.0215 20 6 0.7299 -2.4374 -7.1708 21 6 0.3315 -0.4848 -5.6639 22 6 2.6454 -1.0043 -6.4501 23 6 2.4346 -0.5675 -3.6098 24 6 1.7529 0.0973 -2.4091 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 1.6055 -0.2617 2.1369 29 1 1.7517 -1.7715 1.2055 30 1 6.0254 -1.5056 3.1497 31 1 0.3700 -1.9604 -1.4918 32 1 1.6080 -2.5794 -0.3720 33 1 1.6067 -3.7454 -2.6141 34 1 3.1605 -2.9612 -2.2250 35 1 -0.2239 -2.8676 -6.8655 36 1 0.5787 -1.7977 -8.0402 37 1 1.4246 -3.2379 -7.4256 38 1 0.5801 -0.0875 -4.6798 39 1 0.4052 0.3102 -6.4060 40 1 -0.6855 -0.8766 -5.6512 41 1 3.2968 -1.7939 -6.8248 42 1 2.4770 -0.2685 -7.2364 43 1 3.1163 -0.5204 -5.5944 44 1 3.5168 -0.5242 -3.4866 45 1 2.1497 -0.0530 -4.5274 46 1 2.1467 1.1054 -2.2795 47 1 0.6780 0.1461 -2.5823 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000351619933.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:51 Heat of formation + Delta-G solvation = -18.956513 kcal Electronic energy + Delta-G solvation = -24158.652521 eV Core-core repulsion = 20955.996390 eV Total energy + Delta-G solvation = -3202.656131 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.72289 -38.43375 -35.99515 -35.28917 -32.65797 -31.08401 -30.83213 -27.93514 -27.60273 -27.35793 -26.58060 -23.76937 -23.28144 -22.27598 -20.58561 -19.35896 -18.19218 -16.64511 -16.59948 -16.06674 -15.44486 -15.32894 -14.85057 -14.59635 -14.23770 -14.02313 -13.93906 -13.68465 -13.04338 -12.76370 -12.55746 -12.42194 -12.36440 -12.18617 -12.09612 -11.95687 -11.85831 -11.74146 -11.52024 -11.33827 -11.14555 -10.95706 -10.83969 -10.68922 -10.47729 -10.07201 -9.79921 -9.61428 -9.44994 -9.07063 -8.55742 -8.45121 -7.62082 -5.94178 -3.88705 2.69662 3.06892 3.33525 3.41794 3.43226 4.30661 4.32012 4.51450 4.57227 4.69752 4.94021 5.08998 5.14754 5.26174 5.31567 5.38886 5.41536 5.44414 5.51007 5.55087 5.56726 5.60507 5.67623 5.70703 5.75998 5.79293 5.82433 5.89939 5.94325 5.97638 6.06831 6.12763 6.16959 6.27501 6.37448 6.44999 6.65682 6.70503 7.07243 7.24575 7.51614 7.66322 7.73842 7.89834 8.25429 8.67861 9.17629 9.68776 11.19683 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.026718 B = 0.004384 C = 0.004267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1047.717087 B = 6384.838037 C = 6560.938389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.097 3.903 3 H 0.077 0.923 4 C -0.007 4.007 5 C -0.492 4.492 6 H 0.079 0.921 7 C 0.063 3.937 8 N -0.907 5.907 9 Si 0.871 3.129 10 H -0.279 1.279 11 H -0.290 1.290 12 H -0.268 1.268 13 N -0.507 5.507 14 C 0.043 3.957 15 C 0.116 3.884 16 N -0.605 5.605 17 C 0.522 3.478 18 O -0.548 6.548 19 C -0.086 4.086 20 C -0.124 4.124 21 C -0.156 4.156 22 C -0.159 4.159 23 C 0.091 3.909 24 C 0.037 3.963 25 H 0.052 0.948 26 H 0.057 0.943 27 H 0.042 0.958 28 H 0.018 0.982 29 H 0.012 0.988 30 H 0.260 0.740 31 H 0.029 0.971 32 H 0.096 0.904 33 H 0.088 0.912 34 H 0.079 0.921 35 H 0.060 0.940 36 H 0.059 0.941 37 H 0.061 0.939 38 H 0.074 0.926 39 H 0.068 0.932 40 H 0.060 0.940 41 H 0.061 0.939 42 H 0.067 0.933 43 H 0.077 0.923 44 H 0.080 0.920 45 H 0.104 0.896 46 H 0.084 0.916 47 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.113 2.910 -16.447 19.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C -0.011 4.011 3 H 0.095 0.905 4 C -0.044 4.044 5 C -0.530 4.530 6 H 0.097 0.903 7 C -0.137 4.137 8 N -0.547 5.547 9 Si 0.699 3.301 10 H -0.205 1.205 11 H -0.216 1.216 12 H -0.193 1.193 13 N -0.230 5.230 14 C -0.085 4.085 15 C -0.007 4.007 16 N -0.338 5.338 17 C 0.310 3.690 18 O -0.426 6.426 19 C -0.089 4.089 20 C -0.182 4.182 21 C -0.213 4.213 22 C -0.216 4.216 23 C -0.031 4.031 24 C -0.092 4.092 25 H 0.071 0.929 26 H 0.076 0.924 27 H 0.062 0.938 28 H 0.037 0.963 29 H 0.030 0.970 30 H 0.070 0.930 31 H 0.047 0.953 32 H 0.114 0.886 33 H 0.106 0.894 34 H 0.097 0.903 35 H 0.079 0.921 36 H 0.078 0.922 37 H 0.080 0.920 38 H 0.092 0.908 39 H 0.087 0.913 40 H 0.079 0.921 41 H 0.080 0.920 42 H 0.086 0.914 43 H 0.095 0.905 44 H 0.098 0.902 45 H 0.122 0.878 46 H 0.102 0.898 47 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -9.583 2.173 -16.313 19.044 hybrid contribution -1.211 -0.415 0.856 1.540 sum -10.794 1.759 -15.457 18.935 Atomic orbital electron populations 1.22561 0.99609 1.01404 1.00992 1.21714 0.89904 0.98520 0.90968 0.90454 1.19697 0.98094 0.94975 0.91659 1.21021 0.89292 1.34071 1.08626 0.90325 1.24998 0.94641 0.96262 0.97761 1.69902 1.06418 1.46077 1.32279 0.86927 0.80403 0.80678 0.82085 1.20520 1.21609 1.19336 1.62023 1.58424 1.01488 1.01098 1.22473 0.95443 0.91431 0.99167 1.21788 1.02283 0.94117 0.82482 1.48139 1.62720 1.12307 1.10630 1.20550 0.76363 0.88203 0.83862 1.90657 1.51977 1.16547 1.83416 1.20753 0.97710 0.96193 0.94261 1.21651 1.01496 0.99138 0.95921 1.22219 0.98843 0.97317 1.02940 1.22291 0.95230 1.01374 1.02663 1.22486 1.00439 0.81166 0.99032 1.22501 0.97715 0.97959 0.90994 0.92902 0.92403 0.93849 0.96340 0.96976 0.93029 0.95282 0.88594 0.89413 0.90256 0.92124 0.92200 0.92008 0.90771 0.91338 0.92079 0.91977 0.91396 0.90473 0.90218 0.87795 0.89787 0.95125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.87 8.46 37.16 0.31 -2.55 16 2 C 0.10 1.78 2.25 -67.71 -0.15 1.63 16 3 H 0.08 1.46 7.97 -51.92 -0.41 1.04 16 4 C -0.01 -0.16 3.44 -27.89 -0.10 -0.25 16 5 C -0.49 -13.45 9.39 -34.44 -0.32 -13.77 16 6 H 0.08 2.35 7.99 -52.48 -0.42 1.93 16 7 C 0.06 1.81 5.47 -17.82 -0.10 1.71 16 8 N -0.91 -27.77 13.96 55.43 0.77 -26.99 16 9 Si 0.87 21.50 27.47 -169.99 -4.67 16.84 16 10 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 11 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 12 H -0.27 -6.35 6.54 56.52 0.37 -5.98 16 13 N -0.51 -8.79 4.29 -226.34 -0.97 -9.76 16 14 C 0.04 0.72 4.66 -3.70 -0.02 0.71 16 15 C 0.12 1.85 6.58 -3.60 -0.02 1.83 16 16 N -0.61 -8.61 2.98 -172.46 -0.51 -9.13 16 17 C 0.52 7.54 6.49 -10.99 -0.07 7.46 16 18 O -0.55 -9.82 15.46 5.56 0.09 -9.73 16 19 C -0.09 -0.90 0.75 -155.66 -0.12 -1.02 16 20 C -0.12 -1.25 7.69 37.16 0.29 -0.97 16 21 C -0.16 -1.38 8.09 37.15 0.30 -1.08 16 22 C -0.16 -1.39 8.08 37.16 0.30 -1.09 16 23 C 0.09 1.11 4.03 -3.60 -0.01 1.10 16 24 C 0.04 0.51 5.00 -3.70 -0.02 0.49 16 25 H 0.05 0.81 6.49 -51.93 -0.34 0.48 16 26 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 27 H 0.04 0.59 6.85 -51.93 -0.36 0.23 16 28 H 0.02 0.43 7.20 -51.93 -0.37 0.05 16 29 H 0.01 0.28 5.62 -51.93 -0.29 -0.02 16 30 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 31 H 0.03 0.46 6.67 -51.93 -0.35 0.12 16 32 H 0.10 1.76 6.07 -51.93 -0.32 1.45 16 33 H 0.09 1.42 7.10 -51.93 -0.37 1.05 16 34 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 35 H 0.06 0.66 8.11 -51.93 -0.42 0.24 16 36 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.06 0.68 8.09 -51.93 -0.42 0.26 16 38 H 0.07 0.69 4.22 -51.92 -0.22 0.47 16 39 H 0.07 0.46 7.93 -51.93 -0.41 0.05 16 40 H 0.06 0.56 8.03 -51.93 -0.42 0.14 16 41 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.07 0.46 8.01 -51.93 -0.42 0.04 16 43 H 0.08 0.67 4.62 -51.93 -0.24 0.43 16 44 H 0.08 1.04 8.11 -51.93 -0.42 0.62 16 45 H 0.10 0.98 2.95 -51.93 -0.15 0.83 16 46 H 0.08 1.07 7.99 -51.93 -0.41 0.66 16 47 H 0.03 0.40 6.28 -51.93 -0.33 0.07 16 LS Contribution 342.47 15.07 5.16 5.16 Total: -1.00 -31.90 342.47 -7.80 -39.70 By element: Atomic # 1 Polarization: 7.66 SS G_CDS: -7.94 Total: -0.28 kcal Atomic # 6 Polarization: -6.07 SS G_CDS: 0.27 Total: -5.80 kcal Atomic # 7 Polarization: -45.18 SS G_CDS: -0.71 Total: -45.89 kcal Atomic # 8 Polarization: -9.82 SS G_CDS: 0.09 Total: -9.73 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -4.67 Total: 16.84 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -31.90 -7.80 -39.70 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351619933.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.748 kcal (2) G-P(sol) polarization free energy of solvation -31.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.705 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds