Wall clock time and date at job start Tue Mar 31 2020 05:35:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.47210 * 2 1 4 4 C 1.50698 * 109.47145 * 120.00298 * 2 1 3 5 5 O 1.21279 * 119.99918 * 240.00316 * 4 2 1 6 6 N 1.34775 * 120.00351 * 59.99569 * 4 2 1 7 7 C 1.46500 * 120.00149 * 180.02562 * 6 4 2 8 8 C 1.53121 * 109.52517 * 85.31957 * 7 6 4 9 9 C 1.53035 * 109.28022 * 177.56329 * 8 7 6 10 10 N 1.46846 * 109.52157 * 300.81661 * 9 8 7 11 11 C 1.46897 * 111.00257 * 185.83944 * 10 9 8 12 12 H 1.08996 * 109.47186 * 296.37809 * 11 10 9 13 13 C 1.53005 * 109.47185 * 176.37890 * 11 10 9 14 14 C 1.53001 * 109.46979 * 56.38177 * 11 10 9 15 15 C 1.50700 * 109.47123 * 182.46466 * 14 11 10 16 16 H 1.07999 * 119.99928 * 5.59776 * 15 14 11 17 17 C 1.37882 * 119.99630 * 185.60055 * 15 14 11 18 18 N 1.31509 * 120.00358 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 119.99613 * 179.97438 * 17 15 14 20 20 H 1.48504 * 109.46754 * 90.00124 * 19 17 15 21 21 H 1.48498 * 109.47090 * 209.99915 * 19 17 15 22 22 H 1.48502 * 109.47479 * 330.00335 * 19 17 15 23 23 C 1.46851 * 111.19987 * 61.73969 * 10 9 8 24 24 C 1.53033 * 109.52370 * 298.26530 * 23 10 9 25 25 H 1.09003 * 109.47392 * 60.00093 * 1 2 3 26 26 H 1.09004 * 109.47449 * 180.02562 * 1 2 3 27 27 H 1.09006 * 109.47224 * 299.99933 * 1 2 3 28 28 H 1.09000 * 109.46949 * 239.99769 * 2 1 3 29 29 H 1.08996 * 109.47108 * 179.97438 * 3 2 1 30 30 H 1.08998 * 109.47251 * 299.99606 * 3 2 1 31 31 H 1.09000 * 109.47353 * 60.00017 * 3 2 1 32 32 H 0.96995 * 119.99926 * 0.02562 * 6 4 2 33 33 H 1.09002 * 109.57615 * 325.15964 * 7 6 4 34 34 H 1.09007 * 109.49788 * 297.49994 * 8 7 6 35 35 H 1.08998 * 109.50576 * 57.61731 * 8 7 6 36 36 H 1.09001 * 109.45952 * 180.80419 * 9 8 7 37 37 H 1.08993 * 109.46824 * 60.83118 * 9 8 7 38 38 H 1.08997 * 109.46953 * 60.00046 * 13 11 10 39 39 H 1.09001 * 109.47125 * 180.02562 * 13 11 10 40 40 H 1.09004 * 109.46848 * 300.00318 * 13 11 10 41 41 H 1.09001 * 109.47010 * 302.46259 * 14 11 10 42 42 H 1.08997 * 109.47518 * 62.45842 * 14 11 10 43 43 H 0.97001 * 120.00020 * 179.97438 * 18 17 15 44 44 H 1.08998 * 109.46348 * 178.24298 * 23 10 9 45 45 H 1.09000 * 109.44805 * 58.27068 * 23 10 9 46 46 H 1.08999 * 109.50425 * 299.22984 * 24 23 10 47 47 H 1.09002 * 109.50074 * 179.11477 * 24 23 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 1.2304 5 8 2.7295 -0.1211 2.0288 6 7 1.7067 -2.0008 1.4437 7 6 2.1946 -2.6912 2.6402 8 6 1.2458 -2.4190 3.8108 9 6 1.7269 -3.1914 5.0412 10 7 1.7586 -4.6278 4.7374 11 6 2.0826 -5.4124 5.9363 12 1 3.0871 -5.1594 6.2756 13 6 2.0179 -6.9042 5.6024 14 6 1.0750 -5.0932 7.0424 15 6 1.4428 -5.8522 8.2913 16 1 2.3572 -6.4259 8.3249 17 6 0.6119 -5.8140 9.3910 18 7 -0.5012 -5.1150 9.3503 19 14 1.0675 -6.7554 10.9389 20 1 1.8750 -5.8830 11.8290 21 1 -0.1695 -7.1742 11.6457 22 1 1.8593 -7.9571 10.5725 23 6 2.6987 -4.9194 3.6476 24 6 2.2467 -4.1985 2.3757 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 3.1299 1.4424 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.1493 -2.4722 0.8051 33 1 3.1926 -2.3303 2.8887 34 1 1.2373 -1.3516 4.0316 35 1 0.2396 -2.7447 3.5471 36 1 1.0454 -3.0110 5.8726 37 1 2.7276 -2.8555 5.3127 38 1 2.7357 -7.1316 4.8143 39 1 2.2579 -7.4864 6.4921 40 1 1.0134 -7.1572 5.2630 41 1 1.0899 -4.0232 7.2498 42 1 0.0761 -5.3868 6.7198 43 1 -1.0859 -5.0885 10.1238 44 1 2.7231 -5.9941 3.4669 45 1 3.6948 -4.5752 3.9257 46 1 1.2563 -4.5521 2.0893 47 1 2.9533 -4.4025 1.5712 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000351648288.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:51 Heat of formation + Delta-G solvation = -59.666728 kcal Electronic energy + Delta-G solvation = -22966.409594 eV Core-core repulsion = 19761.988135 eV Total energy + Delta-G solvation = -3204.421459 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.23785 -38.66920 -35.70852 -34.67292 -33.37870 -31.94654 -30.77593 -29.29217 -27.36077 -26.88840 -24.76690 -23.62020 -22.51487 -22.07136 -20.22911 -19.64396 -19.05288 -17.28882 -16.76017 -16.19269 -15.50193 -15.13190 -14.64689 -14.36545 -14.28090 -14.07988 -13.66618 -13.48020 -13.32234 -12.96245 -12.84388 -12.56998 -12.35713 -12.18902 -11.90477 -11.55130 -11.43712 -11.36388 -11.31618 -11.05494 -10.97898 -10.87118 -10.78840 -10.69917 -10.39730 -10.18450 -9.80816 -9.70112 -9.21511 -9.10712 -8.92670 -8.31150 -7.67794 -5.98316 -3.99688 2.57341 3.08820 3.32647 3.39131 3.41801 4.36868 4.44022 4.53898 4.59617 4.68803 4.81749 5.02175 5.11560 5.23073 5.31590 5.37412 5.42667 5.45905 5.56448 5.58482 5.62788 5.71808 5.76511 5.85766 5.90345 5.95706 5.99223 6.02196 6.12478 6.19417 6.26065 6.35575 6.40972 6.54129 6.56847 6.73725 6.95146 7.14155 7.43318 7.56313 7.64671 7.83439 7.88992 8.09566 8.17292 8.45592 9.06505 9.63249 11.13053 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.031084 B = 0.003150 C = 0.002998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 900.583188 B = 8885.693172 C = 9336.591609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.116 4.116 3 C -0.133 4.133 4 C 0.514 3.486 5 O -0.540 6.540 6 N -0.725 5.725 7 C 0.143 3.857 8 C -0.122 4.122 9 C 0.055 3.945 10 N -0.534 5.534 11 C 0.085 3.915 12 H 0.025 0.975 13 C -0.129 4.129 14 C 0.030 3.970 15 C -0.516 4.516 16 H 0.055 0.945 17 C 0.058 3.942 18 N -0.893 5.893 19 Si 0.890 3.110 20 H -0.281 1.281 21 H -0.287 1.287 22 H -0.274 1.274 23 C 0.054 3.946 24 C -0.119 4.119 25 H 0.066 0.934 26 H 0.060 0.940 27 H 0.062 0.938 28 H 0.094 0.906 29 H 0.061 0.939 30 H 0.059 0.941 31 H 0.062 0.938 32 H 0.398 0.602 33 H 0.082 0.918 34 H 0.065 0.935 35 H 0.071 0.929 36 H 0.094 0.906 37 H 0.027 0.973 38 H 0.031 0.969 39 H 0.066 0.934 40 H 0.054 0.946 41 H 0.015 0.985 42 H 0.029 0.971 43 H 0.260 0.740 44 H 0.081 0.919 45 H 0.027 0.973 46 H 0.075 0.925 47 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.864 6.547 -21.045 22.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.137 4.137 3 C -0.190 4.190 4 C 0.300 3.700 5 O -0.416 6.416 6 N -0.375 5.375 7 C 0.039 3.961 8 C -0.160 4.160 9 C -0.073 4.073 10 N -0.259 5.259 11 C -0.021 4.021 12 H 0.043 0.957 13 C -0.187 4.187 14 C -0.007 4.007 15 C -0.555 4.555 16 H 0.073 0.927 17 C -0.143 4.143 18 N -0.533 5.533 19 Si 0.718 3.282 20 H -0.208 1.208 21 H -0.213 1.213 22 H -0.199 1.199 23 C -0.075 4.075 24 C -0.158 4.158 25 H 0.085 0.915 26 H 0.079 0.921 27 H 0.081 0.919 28 H 0.113 0.887 29 H 0.080 0.920 30 H 0.078 0.922 31 H 0.081 0.919 32 H 0.232 0.768 33 H 0.100 0.900 34 H 0.084 0.916 35 H 0.089 0.911 36 H 0.112 0.888 37 H 0.045 0.955 38 H 0.050 0.950 39 H 0.085 0.915 40 H 0.073 0.927 41 H 0.033 0.967 42 H 0.047 0.953 43 H 0.070 0.930 44 H 0.099 0.901 45 H 0.045 0.955 46 H 0.094 0.906 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 2.758 6.878 -20.509 21.807 hybrid contribution 0.703 -0.512 0.891 1.246 sum 3.461 6.366 -19.617 20.913 Atomic orbital electron populations 1.21793 0.92853 1.02574 1.02985 1.21314 0.97637 0.98086 0.96662 1.21606 1.01736 0.93616 1.02071 1.20703 0.79944 0.81821 0.87544 1.90708 1.37876 1.65845 1.47191 1.46158 1.53734 1.12168 1.25472 1.21102 0.98585 0.91823 0.84587 1.21953 0.99574 0.99960 0.94562 1.22095 1.00182 0.87523 0.97528 1.62061 1.49594 1.05899 1.08356 1.21813 0.98497 0.92549 0.89289 0.95673 1.21765 1.00668 0.95960 1.00297 1.19202 0.94258 0.96510 0.90703 1.21188 1.06528 1.29995 0.97801 0.92711 1.24985 0.95027 0.95626 0.98688 1.69965 1.12010 1.41063 1.30223 0.86631 0.77827 0.80261 0.83487 1.20768 1.21259 1.19920 1.22045 0.93766 1.00353 0.91332 1.21845 1.02483 0.93399 0.98058 0.91477 0.92083 0.91896 0.88744 0.92034 0.92170 0.91860 0.76808 0.89962 0.91611 0.91057 0.88804 0.95507 0.95023 0.91483 0.92668 0.96715 0.95271 0.93043 0.90080 0.95517 0.90636 0.91648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.95 9.09 37.16 0.34 -0.61 16 2 C -0.12 -0.93 3.26 -91.78 -0.30 -1.23 16 3 C -0.13 -1.12 8.48 37.16 0.32 -0.80 16 4 C 0.51 6.05 7.12 -10.99 -0.08 5.97 16 5 O -0.54 -8.74 15.64 5.56 0.09 -8.65 16 6 N -0.72 -7.52 4.97 -53.69 -0.27 -7.79 16 7 C 0.14 1.83 2.52 -67.81 -0.17 1.66 16 8 C -0.12 -1.80 5.67 -26.65 -0.15 -1.96 16 9 C 0.06 0.98 5.15 -3.84 -0.02 0.96 16 10 N -0.53 -9.52 4.53 -226.70 -1.03 -10.55 16 11 C 0.09 1.78 2.13 -67.71 -0.14 1.63 16 12 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16 13 C -0.13 -2.46 8.74 37.16 0.32 -2.13 16 14 C 0.03 0.78 4.22 -27.88 -0.12 0.66 16 15 C -0.52 -14.35 8.27 -34.44 -0.28 -14.64 16 16 H 0.05 1.48 7.10 -52.49 -0.37 1.11 16 17 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 18 N -0.89 -26.73 13.29 55.43 0.74 -26.00 16 19 Si 0.89 21.62 29.54 -169.99 -5.02 16.60 16 20 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 21 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 22 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 23 C 0.05 0.78 5.21 -3.83 -0.02 0.76 16 24 C -0.12 -1.39 5.57 -26.65 -0.15 -1.53 16 25 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 26 H 0.06 0.35 7.56 -51.93 -0.39 -0.05 16 27 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.09 0.58 8.14 -51.93 -0.42 0.15 16 29 H 0.06 0.57 8.10 -51.93 -0.42 0.15 16 30 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.06 0.62 8.10 -51.93 -0.42 0.20 16 32 H 0.40 2.99 8.02 -40.82 -0.33 2.66 16 33 H 0.08 1.23 7.58 -51.93 -0.39 0.83 16 34 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 35 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 36 H 0.09 1.88 5.86 -51.93 -0.30 1.58 16 37 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.03 0.50 6.27 -51.93 -0.33 0.18 16 39 H 0.07 1.35 6.89 -51.93 -0.36 0.99 16 40 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 41 H 0.01 0.40 6.09 -51.93 -0.32 0.08 16 42 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 43 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 44 H 0.08 1.12 5.99 -51.93 -0.31 0.81 16 45 H 0.03 0.40 8.14 -51.93 -0.42 -0.03 16 46 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 47 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 361.90 15.07 5.45 5.45 Total: -1.00 -31.74 361.90 -9.16 -40.90 By element: Atomic # 1 Polarization: 8.30 SS G_CDS: -8.57 Total: -0.27 kcal Atomic # 6 Polarization: -9.15 SS G_CDS: -0.55 Total: -9.71 kcal Atomic # 7 Polarization: -43.77 SS G_CDS: -0.56 Total: -44.33 kcal Atomic # 8 Polarization: -8.74 SS G_CDS: 0.09 Total: -8.65 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -31.74 -9.16 -40.90 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351648288.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.764 kcal (2) G-P(sol) polarization free energy of solvation -31.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds