Wall clock time and date at job start Tue Mar 31 2020 05:35:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47454 * 2 1 4 4 C 1.50708 * 109.47244 * 119.99806 * 2 1 3 5 5 O 1.21276 * 119.99581 * 359.97438 * 4 2 1 6 6 N 1.34770 * 119.99945 * 179.97438 * 4 2 1 7 7 C 1.46509 * 119.99646 * 179.97438 * 6 4 2 8 8 C 1.53114 * 109.51954 * 155.00626 * 7 6 4 9 9 C 1.53033 * 109.27866 * 177.56188 * 8 7 6 10 10 N 1.46853 * 109.52305 * 300.81725 * 9 8 7 11 11 C 1.46900 * 111.00293 * 185.83831 * 10 9 8 12 12 H 1.08991 * 109.47516 * 188.74592 * 11 10 9 13 13 C 1.53002 * 109.46957 * 308.74636 * 11 10 9 14 14 C 1.53003 * 109.46787 * 68.74436 * 11 10 9 15 15 C 1.50698 * 109.47323 * 63.57749 * 14 11 10 16 16 H 1.08003 * 119.99770 * 5.07925 * 15 14 11 17 17 C 1.37871 * 120.00232 * 185.08145 * 15 14 11 18 18 N 1.31519 * 119.99913 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 120.00042 * 179.97438 * 17 15 14 20 20 H 1.48496 * 109.46928 * 90.00281 * 19 17 15 21 21 H 1.48501 * 109.47141 * 210.00293 * 19 17 15 22 22 H 1.48495 * 109.47489 * 330.00242 * 19 17 15 23 23 C 1.46845 * 111.19674 * 61.74112 * 10 9 8 24 24 C 1.53038 * 109.52395 * 298.26014 * 23 10 9 25 25 H 1.09005 * 109.46953 * 300.00293 * 1 2 3 26 26 H 1.08999 * 109.46980 * 59.99871 * 1 2 3 27 27 H 1.09002 * 109.47353 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47516 * 239.99678 * 2 1 3 29 29 H 1.08999 * 109.47374 * 179.97438 * 3 2 1 30 30 H 1.08999 * 109.47071 * 300.00589 * 3 2 1 31 31 H 1.09005 * 109.47280 * 59.99907 * 3 2 1 32 32 H 0.97001 * 120.00226 * 0.02562 * 6 4 2 33 33 H 1.08997 * 109.57034 * 34.84797 * 7 6 4 34 34 H 1.08998 * 109.50716 * 57.62011 * 8 7 6 35 35 H 1.09009 * 109.50348 * 297.49678 * 8 7 6 36 36 H 1.08998 * 109.46866 * 60.83251 * 9 8 7 37 37 H 1.09005 * 109.46646 * 180.80021 * 9 8 7 38 38 H 1.08997 * 109.47143 * 179.97438 * 13 11 10 39 39 H 1.08998 * 109.47132 * 300.00087 * 13 11 10 40 40 H 1.09004 * 109.47126 * 59.99975 * 13 11 10 41 41 H 1.09000 * 109.46560 * 183.57500 * 14 11 10 42 42 H 1.08996 * 109.47229 * 303.56902 * 14 11 10 43 43 H 0.96998 * 119.99950 * 179.97438 * 18 17 15 44 44 H 1.09003 * 109.46235 * 58.27617 * 23 10 9 45 45 H 1.08994 * 109.46274 * 178.24303 * 23 10 9 46 46 H 1.08997 * 109.50575 * 179.11916 * 24 23 10 47 47 H 1.08997 * 109.50303 * 299.24189 * 24 23 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0324 -0.7104 1.2305 5 8 1.2443 -1.1708 2.0291 6 7 3.3574 -0.8340 1.4435 7 6 3.8457 -1.5241 2.6401 8 6 5.2492 -2.0761 2.3754 9 6 5.7782 -2.7425 3.6473 10 7 5.8172 -1.7588 4.7370 11 6 6.4490 -2.3258 5.9358 12 1 6.3271 -1.6365 6.7713 13 6 5.7877 -3.6627 6.2769 14 6 7.9395 -2.5470 5.6705 15 6 8.6078 -1.2196 5.4209 16 1 8.0462 -0.3035 5.5292 17 6 9.9361 -1.1747 5.0542 18 7 10.6198 -2.2904 4.9217 19 14 10.7643 0.4707 4.7441 20 1 11.3538 0.9745 6.0104 21 1 11.8372 0.3017 3.7314 22 1 9.7604 1.4438 4.2438 23 6 4.4739 -1.2495 5.0409 24 6 3.9059 -0.5386 3.8105 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 1.8934 -0.5138 -0.8899 29 1 3.1301 1.4424 0.0005 30 1 1.6767 1.9563 -0.8899 31 1 1.6768 1.9563 0.8900 32 1 3.9878 -0.4653 0.8050 33 1 3.1725 -2.3444 2.8887 34 1 5.9130 -1.2605 2.0888 35 1 5.2056 -2.8105 1.5710 36 1 5.1215 -3.5668 3.9257 37 1 6.7831 -3.1242 3.4665 38 1 6.2567 -4.0836 7.1662 39 1 4.7258 -3.5050 6.4658 40 1 5.9097 -4.3520 5.4414 41 1 8.3955 -3.0261 6.5370 42 1 8.0620 -3.1858 4.7959 43 1 11.5542 -2.2588 4.6634 44 1 3.8232 -2.0808 5.3127 45 1 4.5313 -0.5468 5.8721 46 1 2.9026 -0.1744 4.0314 47 1 4.5486 0.3012 3.5464 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000351648292.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:53 Heat of formation + Delta-G solvation = -58.541436 kcal Electronic energy + Delta-G solvation = -23318.959151 eV Core-core repulsion = 20114.586489 eV Total energy + Delta-G solvation = -3204.372662 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.19962 -38.71642 -35.69234 -34.64105 -33.16780 -31.92438 -30.57136 -28.98212 -27.34462 -27.25360 -24.61761 -23.22601 -22.97070 -22.17450 -20.16250 -19.82853 -18.65372 -17.16439 -16.36218 -16.14522 -15.49001 -15.31636 -14.56678 -14.43188 -14.20477 -14.08253 -13.54260 -13.50502 -13.26025 -12.97388 -12.58166 -12.52608 -12.20031 -12.11334 -11.88100 -11.70357 -11.50758 -11.41647 -11.32100 -11.29590 -10.94390 -10.86677 -10.61296 -10.53296 -10.35661 -10.18757 -9.92538 -9.68875 -9.15220 -8.99010 -8.93701 -8.25408 -7.43697 -5.88190 -3.85490 2.60723 3.15075 3.38334 3.44641 3.49299 4.47994 4.53134 4.57506 4.63336 4.71726 4.94968 5.07829 5.16827 5.33625 5.35379 5.46562 5.48958 5.51835 5.57936 5.65845 5.69109 5.74632 5.79624 5.86233 5.89223 5.94348 5.99905 6.01861 6.07101 6.11551 6.28172 6.33552 6.38885 6.54788 6.55254 6.64440 6.73148 7.01448 7.49258 7.55481 7.69440 7.93276 8.04485 8.13302 8.21071 8.59138 9.19850 9.75724 11.23852 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.020174 B = 0.004020 C = 0.003579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1387.569914 B = 6963.707787 C = 7822.620769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.116 4.116 3 C -0.144 4.144 4 C 0.514 3.486 5 O -0.544 6.544 6 N -0.723 5.723 7 C 0.145 3.855 8 C -0.121 4.121 9 C 0.061 3.939 10 N -0.509 5.509 11 C 0.087 3.913 12 H 0.068 0.932 13 C -0.184 4.184 14 C 0.030 3.970 15 C -0.486 4.486 16 H 0.059 0.941 17 C 0.050 3.950 18 N -0.905 5.905 19 Si 0.888 3.112 20 H -0.284 1.284 21 H -0.290 1.290 22 H -0.275 1.275 23 C 0.057 3.943 24 C -0.121 4.121 25 H 0.061 0.939 26 H 0.059 0.941 27 H 0.060 0.940 28 H 0.095 0.905 29 H 0.061 0.939 30 H 0.066 0.934 31 H 0.061 0.939 32 H 0.399 0.601 33 H 0.081 0.919 34 H 0.079 0.921 35 H 0.064 0.936 36 H 0.026 0.974 37 H 0.091 0.909 38 H 0.055 0.945 39 H 0.039 0.961 40 H 0.053 0.947 41 H 0.014 0.986 42 H 0.022 0.978 43 H 0.257 0.743 44 H 0.025 0.975 45 H 0.071 0.929 46 H 0.062 0.938 47 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.343 3.277 -9.716 19.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.138 4.138 3 C -0.202 4.202 4 C 0.301 3.699 5 O -0.421 6.421 6 N -0.374 5.374 7 C 0.040 3.960 8 C -0.160 4.160 9 C -0.068 4.068 10 N -0.232 5.232 11 C -0.021 4.021 12 H 0.086 0.914 13 C -0.243 4.243 14 C -0.007 4.007 15 C -0.525 4.525 16 H 0.077 0.923 17 C -0.149 4.149 18 N -0.546 5.546 19 Si 0.717 3.283 20 H -0.211 1.211 21 H -0.216 1.216 22 H -0.200 1.200 23 C -0.072 4.072 24 C -0.160 4.160 25 H 0.080 0.920 26 H 0.078 0.922 27 H 0.080 0.920 28 H 0.113 0.887 29 H 0.080 0.920 30 H 0.085 0.915 31 H 0.080 0.920 32 H 0.233 0.767 33 H 0.099 0.901 34 H 0.097 0.903 35 H 0.083 0.917 36 H 0.044 0.956 37 H 0.110 0.890 38 H 0.074 0.926 39 H 0.058 0.942 40 H 0.072 0.928 41 H 0.033 0.967 42 H 0.040 0.960 43 H 0.066 0.934 44 H 0.043 0.957 45 H 0.090 0.910 46 H 0.080 0.920 47 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -16.455 3.282 -9.340 19.203 hybrid contribution 0.451 0.357 -0.241 0.623 sum -16.004 3.638 -9.582 19.005 Atomic orbital electron populations 1.21601 0.92632 1.02735 1.01977 1.21319 0.98314 0.97356 0.96790 1.21790 1.01375 0.94165 1.02875 1.20686 0.82348 0.79403 0.87502 1.90687 1.55367 1.48682 1.47317 1.46188 1.06948 1.58703 1.25538 1.21095 0.95659 0.94793 0.84405 1.21871 0.94579 1.01095 0.98431 1.21999 1.01535 0.92807 0.90429 1.62061 1.17047 1.36531 1.07597 1.21907 0.97576 0.91959 0.90653 0.91374 1.22527 0.99542 1.00514 1.01711 1.19190 0.87156 0.97468 0.96869 1.21140 0.94398 0.92901 1.44016 0.92297 1.24991 0.97672 0.95920 0.96313 1.69964 1.08969 1.26047 1.49603 0.86650 0.79103 0.84797 0.77736 1.21063 1.21617 1.19969 1.22015 0.90232 0.98100 0.96891 1.21920 1.00496 0.98848 0.94751 0.91959 0.92199 0.92044 0.88678 0.91988 0.91493 0.92009 0.76652 0.90115 0.90272 0.91687 0.95596 0.89041 0.92580 0.94189 0.92782 0.96736 0.95951 0.93370 0.95679 0.91019 0.91959 0.90904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.14 8.48 37.16 0.32 -0.82 16 2 C -0.12 -0.99 3.26 -91.77 -0.30 -1.29 16 3 C -0.14 -1.02 9.09 37.16 0.34 -0.69 16 4 C 0.51 6.26 7.12 -10.98 -0.08 6.19 16 5 O -0.54 -8.79 15.64 5.56 0.09 -8.70 16 6 N -0.72 -8.16 4.97 -53.68 -0.27 -8.43 16 7 C 0.14 1.96 2.52 -67.80 -0.17 1.79 16 8 C -0.12 -1.71 5.57 -26.66 -0.15 -1.85 16 9 C 0.06 1.03 4.47 -3.83 -0.02 1.01 16 10 N -0.51 -9.42 4.26 -226.69 -0.97 -10.39 16 11 C 0.09 1.75 2.26 -67.71 -0.15 1.59 16 12 H 0.07 1.40 7.93 -51.93 -0.41 0.99 16 13 C -0.18 -3.17 8.40 37.16 0.31 -2.86 16 14 C 0.03 0.75 4.40 -27.88 -0.12 0.63 16 15 C -0.49 -13.39 8.80 -34.44 -0.30 -13.69 16 16 H 0.06 1.63 7.75 -52.48 -0.41 1.22 16 17 C 0.05 1.42 5.46 -17.82 -0.10 1.33 16 18 N -0.90 -26.95 13.29 55.43 0.74 -26.21 16 19 Si 0.89 21.78 29.54 -169.99 -5.02 16.76 16 20 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 21 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 22 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 23 C 0.06 0.91 5.18 -3.83 -0.02 0.89 16 24 C -0.12 -1.76 5.67 -26.65 -0.15 -1.91 16 25 H 0.06 0.61 8.10 -51.93 -0.42 0.19 16 26 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 27 H 0.06 0.58 8.10 -51.93 -0.42 0.16 16 28 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.06 0.40 7.56 -51.93 -0.39 0.01 16 30 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 32 H 0.40 3.56 8.02 -40.82 -0.33 3.23 16 33 H 0.08 1.23 7.58 -51.93 -0.39 0.84 16 34 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 35 H 0.06 0.81 8.14 -51.92 -0.42 0.39 16 36 H 0.03 0.42 6.57 -51.93 -0.34 0.08 16 37 H 0.09 1.78 6.28 -51.93 -0.33 1.45 16 38 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 39 H 0.04 0.62 6.93 -51.93 -0.36 0.26 16 40 H 0.05 0.92 6.44 -51.93 -0.33 0.59 16 41 H 0.01 0.39 8.14 -51.93 -0.42 -0.04 16 42 H 0.02 0.59 6.39 -51.93 -0.33 0.26 16 43 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 44 H 0.03 0.40 6.98 -51.93 -0.36 0.03 16 45 H 0.07 1.14 7.98 -51.93 -0.41 0.73 16 46 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 47 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 LS Contribution 362.05 15.07 5.46 5.46 Total: -1.00 -31.48 362.05 -9.18 -40.65 By element: Atomic # 1 Polarization: 9.16 SS G_CDS: -8.61 Total: 0.55 kcal Atomic # 6 Polarization: -9.09 SS G_CDS: -0.60 Total: -9.69 kcal Atomic # 7 Polarization: -44.53 SS G_CDS: -0.50 Total: -45.03 kcal Atomic # 8 Polarization: -8.79 SS G_CDS: 0.09 Total: -8.70 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -31.48 -9.18 -40.65 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351648292.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.888 kcal (2) G-P(sol) polarization free energy of solvation -31.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.653 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds