Wall clock time and date at job start Tue Mar 31 2020 05:21:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09002 * 109.46916 * 2 1 4 4 C 1.52995 * 109.47295 * 239.99616 * 2 1 3 5 5 C 1.53002 * 109.47042 * 174.99870 * 4 2 1 6 6 C 1.52999 * 117.49959 * 243.62360 * 5 4 2 7 7 C 1.52992 * 117.49665 * 175.00072 * 5 4 2 8 8 N 1.46500 * 109.46837 * 119.99433 * 2 1 3 9 9 C 1.34773 * 120.00431 * 275.00470 * 8 2 1 10 10 O 1.21593 * 119.99894 * 359.97438 * 9 8 2 11 11 N 1.34777 * 120.00097 * 179.72742 * 9 8 2 12 12 C 1.46504 * 119.99854 * 180.27545 * 11 9 8 13 13 C 1.53004 * 109.46928 * 179.97438 * 12 11 9 14 14 C 1.53001 * 109.46866 * 299.99525 * 13 12 11 15 15 C 1.52994 * 109.47172 * 59.99462 * 13 12 11 16 16 C 1.53000 * 109.46988 * 179.97438 * 13 12 11 17 17 C 1.50701 * 109.46983 * 179.97438 * 16 13 12 18 18 H 1.08000 * 119.99624 * 359.97438 * 17 16 13 19 19 C 1.37872 * 119.99634 * 179.97438 * 17 16 13 20 20 N 1.31520 * 119.99520 * 179.97438 * 19 17 16 21 21 Si 1.86800 * 120.00320 * 0.02562 * 19 17 16 22 22 H 1.48506 * 109.46712 * 90.00023 * 21 19 17 23 23 H 1.48500 * 109.46916 * 209.99365 * 21 19 17 24 24 H 1.48499 * 109.47159 * 330.00030 * 21 19 17 25 25 H 1.09004 * 109.46414 * 60.00139 * 1 2 3 26 26 H 1.08994 * 109.47203 * 180.02562 * 1 2 3 27 27 H 1.08991 * 109.47246 * 300.00614 * 1 2 3 28 28 H 1.08994 * 109.47294 * 295.00555 * 4 2 1 29 29 H 1.09007 * 109.46880 * 55.00617 * 4 2 1 30 30 H 1.09000 * 115.54651 * 29.33668 * 5 4 2 31 31 H 1.08998 * 117.49782 * 0.02562 * 6 5 4 32 32 H 1.09004 * 117.49857 * 145.02179 * 6 5 4 33 33 H 1.09005 * 117.49914 * 214.97780 * 7 5 4 34 34 H 1.09001 * 117.50358 * 359.97438 * 7 5 4 35 35 H 0.97000 * 119.99456 * 95.00032 * 8 2 1 36 36 H 0.97000 * 119.99736 * 0.26819 * 11 9 8 37 37 H 1.08998 * 109.46968 * 299.99782 * 12 11 9 38 38 H 1.08997 * 109.47198 * 59.99605 * 12 11 9 39 39 H 1.09007 * 109.47177 * 60.00009 * 14 13 12 40 40 H 1.08994 * 109.47297 * 180.02562 * 14 13 12 41 41 H 1.08997 * 109.47361 * 300.00353 * 14 13 12 42 42 H 1.09006 * 109.47135 * 60.00046 * 15 13 12 43 43 H 1.09001 * 109.47144 * 179.97438 * 15 13 12 44 44 H 1.08998 * 109.47717 * 300.00195 * 15 13 12 45 45 H 1.08998 * 109.46983 * 299.99930 * 16 13 12 46 46 H 1.08997 * 109.47123 * 59.99717 * 16 13 12 47 47 H 0.97003 * 119.99577 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 3.5650 -0.6133 -1.3135 6 6 4.1698 0.1513 -2.4927 7 6 4.2803 -1.3735 -2.4320 8 7 2.0183 -0.6905 1.1963 9 6 2.1470 -0.0182 2.3572 10 8 1.8582 1.1617 2.4116 11 7 2.5910 -0.6548 3.4590 12 6 2.7250 0.0746 4.7225 13 6 3.2436 -0.8731 5.8060 14 6 2.2578 -2.0291 5.9867 15 6 4.6077 -1.4265 5.3892 16 6 3.3842 -0.1111 7.1253 17 6 3.8943 -1.0448 8.1926 18 1 4.0975 -2.0783 7.9538 19 6 4.1017 -0.5794 9.4737 20 7 4.5464 -1.3944 10.4053 21 14 3.7496 1.2080 9.8868 22 1 2.3394 1.3446 10.3317 23 1 4.6572 1.6526 10.9748 24 1 3.9722 2.0475 8.6822 25 1 -0.3632 0.5138 -0.8901 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8898 28 1 1.7517 -1.7715 -1.2055 29 1 1.6055 -0.2617 -2.1369 30 1 4.0720 -0.5387 -0.3515 31 1 3.4815 0.5777 -3.2223 32 1 5.0751 0.7293 -2.3066 33 1 5.2583 -1.7986 -2.2060 34 1 3.6648 -1.9510 -3.1218 35 1 2.2490 -1.6317 1.1527 36 1 2.8216 -1.5960 3.4155 37 1 3.4269 0.8985 4.5936 38 1 1.7531 0.4685 5.0195 39 1 2.1579 -2.5719 5.0466 40 1 2.6269 -2.7041 6.7588 41 1 1.2859 -1.6349 6.2835 42 1 5.3100 -0.6028 5.2604 43 1 4.9773 -2.1013 6.1613 44 1 4.5080 -1.9692 4.4492 45 1 4.0866 0.7122 6.9962 46 1 2.4125 0.2834 7.4223 47 1 4.6927 -1.0669 11.3066 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000353295736.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:04 Heat of formation + Delta-G solvation = -34.090896 kcal Electronic energy + Delta-G solvation = -22614.832499 eV Core-core repulsion = 19411.520091 eV Total energy + Delta-G solvation = -3203.312407 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.07154 -38.24930 -37.24647 -35.34740 -33.60623 -32.18301 -30.92666 -27.77240 -27.74035 -26.53606 -26.02983 -22.80401 -22.67492 -21.67002 -20.75898 -20.50882 -18.82847 -17.64095 -16.85532 -16.33345 -15.86683 -15.38016 -14.77310 -14.70146 -14.26079 -13.97991 -13.79525 -13.38865 -13.28410 -13.04825 -12.75373 -12.68732 -12.27826 -12.21873 -12.20208 -11.82821 -11.48236 -11.31819 -11.20712 -11.09004 -10.99425 -10.59772 -10.49823 -10.45428 -10.20575 -10.03055 -9.94606 -9.73016 -9.48783 -9.16150 -8.97610 -8.58240 -8.52048 -6.03106 -4.00215 2.85487 3.33031 3.40833 3.40949 3.45560 3.48764 4.22054 4.43420 4.47154 4.53870 4.63093 4.85486 4.97688 5.15432 5.26203 5.29897 5.33016 5.41311 5.43118 5.48645 5.56093 5.57595 5.63579 5.66741 5.80422 5.88380 5.99640 6.09610 6.14865 6.15460 6.21654 6.35953 6.54277 6.56050 6.61649 6.77196 6.93505 7.03440 7.05994 7.10376 7.22886 7.39235 7.79753 8.19560 8.54109 8.79924 9.01013 9.59822 11.09664 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.027805 B = 0.003094 C = 0.003000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1006.768660 B = 9046.984942 C = 9332.547063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.164 3.836 3 H 0.088 0.912 4 C -0.095 4.095 5 C -0.153 4.153 6 C -0.181 4.181 7 C -0.182 4.182 8 N -0.745 5.745 9 C 0.700 3.300 10 O -0.596 6.596 11 N -0.738 5.738 12 C 0.145 3.855 13 C -0.063 4.063 14 C -0.127 4.127 15 C -0.127 4.127 16 C -0.002 4.002 17 C -0.510 4.510 18 H 0.078 0.922 19 C 0.066 3.934 20 N -0.905 5.905 21 Si 0.875 3.125 22 H -0.278 1.278 23 H -0.289 1.289 24 H -0.265 1.265 25 H 0.062 0.938 26 H 0.054 0.946 27 H 0.063 0.937 28 H 0.071 0.929 29 H 0.078 0.922 30 H 0.107 0.893 31 H 0.093 0.907 32 H 0.092 0.908 33 H 0.092 0.908 34 H 0.093 0.907 35 H 0.393 0.607 36 H 0.394 0.606 37 H 0.060 0.940 38 H 0.060 0.940 39 H 0.030 0.970 40 H 0.071 0.929 41 H 0.046 0.954 42 H 0.046 0.954 43 H 0.071 0.929 44 H 0.030 0.970 45 H 0.018 0.982 46 H 0.014 0.986 47 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.292 -1.395 -24.956 25.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.058 3.942 3 H 0.106 0.894 4 C -0.133 4.133 5 C -0.171 4.171 6 C -0.218 4.218 7 C -0.219 4.219 8 N -0.401 5.401 9 C 0.400 3.600 10 O -0.474 6.474 11 N -0.393 5.393 12 C 0.022 3.978 13 C -0.063 4.063 14 C -0.185 4.185 15 C -0.185 4.185 16 C -0.040 4.040 17 C -0.548 4.548 18 H 0.096 0.904 19 C -0.135 4.135 20 N -0.544 5.544 21 Si 0.702 3.298 22 H -0.204 1.204 23 H -0.215 1.215 24 H -0.189 1.189 25 H 0.081 0.919 26 H 0.073 0.927 27 H 0.082 0.918 28 H 0.090 0.910 29 H 0.097 0.903 30 H 0.125 0.875 31 H 0.112 0.888 32 H 0.111 0.889 33 H 0.111 0.889 34 H 0.111 0.889 35 H 0.226 0.774 36 H 0.229 0.771 37 H 0.079 0.921 38 H 0.079 0.921 39 H 0.049 0.951 40 H 0.090 0.910 41 H 0.066 0.934 42 H 0.066 0.934 43 H 0.090 0.910 44 H 0.049 0.951 45 H 0.037 0.963 46 H 0.032 0.968 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -4.507 -0.284 -24.699 25.108 hybrid contribution 0.093 0.046 0.374 0.389 sum -4.414 -0.238 -24.324 24.722 Atomic orbital electron populations 1.22209 0.95614 1.01943 1.02567 1.20713 0.93426 0.97394 0.82636 0.89355 1.21505 0.93060 1.01097 0.97669 1.22350 0.95088 1.05044 0.94599 1.23030 1.03225 0.94376 1.01147 1.22962 1.02192 0.94553 1.02234 1.45224 1.72396 1.13451 1.09071 1.16026 0.78436 0.85157 0.80370 1.90905 1.57308 1.14487 1.84706 1.45333 1.70712 1.13907 1.09349 1.21473 1.00845 0.94473 0.81059 1.20692 0.95121 0.95361 0.95145 1.21761 0.98628 0.98107 0.99973 1.21758 0.96417 1.00846 0.99432 1.19590 0.96608 0.96032 0.91768 1.21084 1.43334 0.97661 0.92721 0.90412 1.24999 0.94756 0.97254 0.96452 1.69908 1.46524 1.35261 1.02697 0.86857 0.78327 0.86263 0.78326 1.20372 1.21533 1.18944 0.91934 0.92658 0.91769 0.91023 0.90322 0.87469 0.88829 0.88945 0.88906 0.88900 0.77355 0.77098 0.92121 0.92126 0.95071 0.90975 0.93446 0.93449 0.90973 0.95073 0.96343 0.96795 0.92819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.50 9.48 37.16 0.35 -1.14 16 2 C 0.16 1.55 2.56 -67.93 -0.17 1.38 16 3 H 0.09 1.05 7.58 -51.93 -0.39 0.66 16 4 C -0.10 -0.65 5.03 -26.73 -0.13 -0.79 16 5 C -0.15 -1.18 5.61 -90.62 -0.51 -1.69 16 6 C -0.18 -1.32 10.18 -26.73 -0.27 -1.59 16 7 C -0.18 -1.24 10.25 -26.74 -0.27 -1.51 16 8 N -0.75 -7.79 4.51 -58.67 -0.26 -8.06 16 9 C 0.70 10.35 8.53 -86.92 -0.74 9.61 16 10 O -0.60 -11.33 16.01 5.28 0.08 -11.25 16 11 N -0.74 -10.41 4.96 -65.22 -0.32 -10.73 16 12 C 0.15 2.48 4.56 -4.04 -0.02 2.46 16 13 C -0.06 -1.15 0.54 -154.51 -0.08 -1.23 16 14 C -0.13 -2.21 8.05 37.16 0.30 -1.91 16 15 C -0.13 -2.20 8.05 37.15 0.30 -1.90 16 16 C 0.00 -0.05 3.11 -27.88 -0.09 -0.14 16 17 C -0.51 -13.68 8.20 -34.44 -0.28 -13.96 16 18 H 0.08 2.20 5.92 -52.49 -0.31 1.89 16 19 C 0.07 1.88 5.47 -17.82 -0.10 1.78 16 20 N -0.90 -27.32 13.96 55.43 0.77 -26.54 16 21 Si 0.87 21.62 27.47 -169.99 -4.67 16.95 16 22 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 23 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 24 H -0.26 -6.35 6.54 56.52 0.37 -5.98 16 25 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 29 H 0.08 0.47 7.88 -51.93 -0.41 0.06 16 30 H 0.11 0.99 7.69 -51.93 -0.40 0.59 16 31 H 0.09 0.60 8.03 -51.93 -0.42 0.19 16 32 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 34 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.39 3.13 8.62 -40.82 -0.35 2.78 16 36 H 0.39 4.66 6.18 -40.82 -0.25 4.41 16 37 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 38 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 39 H 0.03 0.44 6.86 -51.93 -0.36 0.08 16 40 H 0.07 1.40 6.62 -51.93 -0.34 1.06 16 41 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 42 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 43 H 0.07 1.40 6.62 -51.93 -0.34 1.06 16 44 H 0.03 0.44 6.86 -51.93 -0.36 0.08 16 45 H 0.02 0.43 7.20 -51.93 -0.37 0.06 16 46 H 0.01 0.32 7.57 -51.93 -0.39 -0.07 16 47 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 368.77 15.07 5.56 5.56 Total: -1.00 -31.60 368.77 -9.08 -40.68 By element: Atomic # 1 Polarization: 12.53 SS G_CDS: -8.52 Total: 4.01 kcal Atomic # 6 Polarization: -8.90 SS G_CDS: -1.72 Total: -10.63 kcal Atomic # 7 Polarization: -45.51 SS G_CDS: 0.19 Total: -45.33 kcal Atomic # 8 Polarization: -11.33 SS G_CDS: 0.08 Total: -11.25 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -4.67 Total: 16.95 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -31.60 -9.08 -40.68 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353295736.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.591 kcal (2) G-P(sol) polarization free energy of solvation -31.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.682 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds