Wall clock time and date at job start Tue Mar 31 2020 05:21:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.47232 * 2 1 4 4 C 1.52995 * 109.47312 * 120.00347 * 2 1 3 5 5 C 1.53003 * 109.47289 * 184.99950 * 4 2 1 6 6 C 1.53001 * 117.51964 * 116.28130 * 5 4 2 7 7 C 1.52999 * 60.00190 * 107.47982 * 6 5 4 8 8 N 1.46500 * 109.47207 * 239.99976 * 2 1 3 9 9 C 1.34781 * 119.99928 * 84.99727 * 8 2 1 10 10 O 1.21580 * 119.99933 * 0.02562 * 9 8 2 11 11 N 1.34783 * 120.00006 * 180.02562 * 9 8 2 12 12 C 1.46502 * 119.99826 * 180.02562 * 11 9 8 13 13 C 1.53001 * 109.46861 * 179.97438 * 12 11 9 14 14 C 1.53002 * 109.47041 * 300.00012 * 13 12 11 15 15 C 1.52995 * 109.47285 * 59.99443 * 13 12 11 16 16 C 1.52997 * 109.46989 * 179.97438 * 13 12 11 17 17 C 1.50702 * 109.47061 * 179.97438 * 16 13 12 18 18 H 1.07999 * 120.00150 * 0.02562 * 17 16 13 19 19 C 1.37876 * 119.99971 * 180.02562 * 17 16 13 20 20 N 1.31515 * 120.00166 * 359.97438 * 19 17 16 21 21 Si 1.86796 * 119.99887 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47277 * 359.97438 * 21 19 17 23 23 H 1.48507 * 109.47397 * 119.99839 * 21 19 17 24 24 H 1.48501 * 109.47037 * 239.99567 * 21 19 17 25 25 H 1.08998 * 109.47012 * 300.00172 * 1 2 3 26 26 H 1.09004 * 109.46958 * 59.99520 * 1 2 3 27 27 H 1.08994 * 109.47158 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47504 * 64.99385 * 4 2 1 29 29 H 1.09005 * 109.46851 * 304.99539 * 4 2 1 30 30 H 1.09002 * 115.54973 * 330.57913 * 5 4 2 31 31 H 1.09001 * 117.49733 * 214.97413 * 6 5 4 32 32 H 1.08995 * 117.49577 * 359.97438 * 6 5 4 33 33 H 1.09004 * 117.50150 * 252.51496 * 7 6 5 34 34 H 1.09004 * 117.51638 * 107.47550 * 7 6 5 35 35 H 0.96999 * 120.00388 * 265.00769 * 8 2 1 36 36 H 0.96999 * 119.99546 * 359.97438 * 11 9 8 37 37 H 1.08997 * 109.46821 * 299.99263 * 12 11 9 38 38 H 1.08992 * 109.47301 * 59.99715 * 12 11 9 39 39 H 1.08991 * 109.47525 * 59.99533 * 14 13 12 40 40 H 1.08996 * 109.46985 * 180.02562 * 14 13 12 41 41 H 1.09002 * 109.46975 * 300.00094 * 14 13 12 42 42 H 1.09007 * 109.47008 * 60.00073 * 15 13 12 43 43 H 1.09002 * 109.47627 * 179.97438 * 15 13 12 44 44 H 1.09001 * 109.47393 * 300.00408 * 15 13 12 45 45 H 1.08997 * 109.47068 * 299.99769 * 16 13 12 46 46 H 1.09002 * 109.46864 * 60.00005 * 16 13 12 47 47 H 0.97000 * 119.99863 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2491 5 6 3.5649 -0.6133 1.3136 6 6 4.1702 0.1530 2.4914 7 6 4.2801 -1.3719 2.4334 8 7 2.0184 -0.6906 -1.1962 9 6 2.1470 -0.0182 -2.3572 10 8 1.8583 1.1615 -2.4116 11 7 2.5958 -0.6537 -3.4578 12 6 2.7362 0.0773 -4.7196 13 6 3.2605 -0.8690 -5.8016 14 6 4.6227 -1.4225 -5.3785 15 6 2.2761 -2.0252 -5.9886 16 6 3.4065 -0.1057 -7.1195 17 6 3.9236 -1.0376 -8.1850 18 1 4.1272 -2.0710 -7.9462 19 6 4.1366 -0.5710 -9.4648 20 7 3.8882 0.6873 -9.7558 21 14 4.7768 -1.7262 -10.7857 22 1 4.9742 -3.0793 -10.2066 23 1 3.7940 -1.8013 -11.8965 24 1 6.0716 -1.2164 -11.3041 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 1.7516 -1.7715 1.2056 29 1 1.6054 -0.2617 2.1369 30 1 4.0721 -0.5402 0.3515 31 1 5.0756 0.7304 2.3042 32 1 3.4821 0.5808 3.2204 33 1 3.6643 -1.9476 3.1244 34 1 5.2577 -1.7981 2.2079 35 1 2.2490 -1.6318 -1.1527 36 1 2.8266 -1.5949 -3.4142 37 1 1.7658 0.4719 -5.0207 38 1 3.4378 0.9006 -4.5864 39 1 4.5183 -1.9663 -4.4397 40 1 4.9964 -2.0963 -6.1495 41 1 5.3241 -0.5988 -5.2452 42 1 1.3056 -1.6309 -6.2900 43 1 2.6494 -2.6991 -6.7597 44 1 2.1717 -2.5690 -5.0498 45 1 2.4359 0.2882 -7.4206 46 1 4.1077 0.7181 -6.9864 47 1 4.0377 1.0155 -10.6563 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000353295737.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:06 Heat of formation + Delta-G solvation = -37.501247 kcal Electronic energy + Delta-G solvation = -22564.956050 eV Core-core repulsion = 19361.495759 eV Total energy + Delta-G solvation = -3203.460291 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.00505 -38.19728 -37.14041 -35.29593 -33.55341 -32.18207 -30.84411 -27.71328 -27.07227 -26.48678 -25.96582 -23.06060 -22.67806 -21.73900 -20.74251 -20.46292 -18.78814 -17.62787 -16.45410 -16.14532 -15.83995 -15.30737 -14.73401 -14.65495 -14.36784 -14.09586 -13.68262 -13.28052 -13.07220 -12.96801 -12.71587 -12.68457 -12.17115 -12.09218 -12.04595 -11.80687 -11.45282 -11.27542 -11.10671 -11.00676 -10.82534 -10.62565 -10.47100 -10.37478 -10.21901 -10.17534 -9.94439 -9.85170 -9.18004 -9.10179 -8.89716 -8.49914 -8.34908 -5.98753 -3.99884 2.91838 3.30721 3.38833 3.41161 3.47599 3.51293 4.25265 4.44384 4.51149 4.56788 4.65716 4.88553 5.01026 5.18878 5.29439 5.34930 5.36881 5.46154 5.51192 5.54159 5.58992 5.66421 5.67702 5.78019 5.82595 5.92718 6.02411 6.13658 6.20753 6.25501 6.32296 6.44721 6.61178 6.63707 6.65252 6.84997 7.09092 7.09977 7.11738 7.19877 7.66542 7.78937 8.00339 8.26218 8.42271 8.86976 9.05274 9.63180 11.12782 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.029530 B = 0.002957 C = 0.002842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 947.967321 B = 9467.878860 C = 9850.542648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.164 3.836 3 H 0.088 0.912 4 C -0.095 4.095 5 C -0.152 4.152 6 C -0.181 4.181 7 C -0.183 4.183 8 N -0.746 5.746 9 C 0.700 3.300 10 O -0.595 6.595 11 N -0.738 5.738 12 C 0.147 3.853 13 C -0.072 4.072 14 C -0.126 4.126 15 C -0.126 4.126 16 C 0.036 3.964 17 C -0.510 4.510 18 H 0.060 0.940 19 C 0.055 3.945 20 N -0.894 5.894 21 Si 0.888 3.112 22 H -0.274 1.274 23 H -0.285 1.285 24 H -0.285 1.285 25 H 0.061 0.939 26 H 0.064 0.936 27 H 0.054 0.946 28 H 0.071 0.929 29 H 0.078 0.922 30 H 0.107 0.893 31 H 0.092 0.908 32 H 0.093 0.907 33 H 0.092 0.908 34 H 0.092 0.908 35 H 0.392 0.608 36 H 0.393 0.607 37 H 0.061 0.939 38 H 0.060 0.940 39 H 0.028 0.972 40 H 0.066 0.934 41 H 0.047 0.953 42 H 0.047 0.953 43 H 0.066 0.934 44 H 0.028 0.972 45 H 0.019 0.981 46 H 0.018 0.982 47 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.792 -5.996 23.219 24.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.058 3.942 3 H 0.107 0.893 4 C -0.133 4.133 5 C -0.171 4.171 6 C -0.218 4.218 7 C -0.220 4.220 8 N -0.402 5.402 9 C 0.399 3.601 10 O -0.473 6.473 11 N -0.393 5.393 12 C 0.024 3.976 13 C -0.073 4.073 14 C -0.183 4.183 15 C -0.183 4.183 16 C -0.002 4.002 17 C -0.548 4.548 18 H 0.078 0.922 19 C -0.145 4.145 20 N -0.534 5.534 21 Si 0.716 3.284 22 H -0.198 1.198 23 H -0.211 1.211 24 H -0.212 1.212 25 H 0.080 0.920 26 H 0.083 0.917 27 H 0.073 0.927 28 H 0.089 0.911 29 H 0.097 0.903 30 H 0.125 0.875 31 H 0.111 0.889 32 H 0.112 0.888 33 H 0.111 0.889 34 H 0.111 0.889 35 H 0.226 0.774 36 H 0.227 0.773 37 H 0.079 0.921 38 H 0.079 0.921 39 H 0.047 0.953 40 H 0.085 0.915 41 H 0.066 0.934 42 H 0.066 0.934 43 H 0.085 0.915 44 H 0.047 0.953 45 H 0.037 0.963 46 H 0.037 0.963 47 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -3.054 -4.751 23.004 23.687 hybrid contribution 0.609 -1.420 -0.818 1.748 sum -2.445 -6.171 22.187 23.158 Atomic orbital electron populations 1.22209 0.95641 1.01901 1.02578 1.20705 0.93413 0.97412 0.82645 0.89343 1.21503 0.93039 1.01066 0.97696 1.22356 0.95109 1.05001 0.94598 1.23029 1.03230 0.94327 1.01178 1.22963 1.02181 0.94587 1.02247 1.45230 1.72500 1.13411 1.09080 1.16041 0.78487 0.85172 0.80364 1.90906 1.57279 1.14465 1.84640 1.45382 1.70465 1.13841 1.09643 1.21463 1.00882 0.94442 0.80822 1.20907 0.94510 0.95486 0.96365 1.21745 0.96895 1.00652 0.98998 1.21747 0.98915 0.98105 0.99525 1.19094 0.97375 0.95015 0.88707 1.21224 1.43155 0.96315 0.94113 0.92221 1.25017 0.95879 0.94975 0.98678 1.69978 1.49092 1.14135 1.20178 0.86599 0.78543 0.81128 0.82080 1.19818 1.21144 1.21153 0.91965 0.91727 0.92702 0.91062 0.90347 0.87452 0.88938 0.88829 0.88922 0.88930 0.77432 0.77261 0.92105 0.92118 0.95319 0.91533 0.93414 0.93404 0.91534 0.95319 0.96315 0.96325 0.93107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.55 9.48 37.16 0.35 -1.20 16 2 C 0.16 1.61 2.56 -67.93 -0.17 1.44 16 3 H 0.09 1.09 7.58 -51.93 -0.39 0.69 16 4 C -0.10 -0.68 5.03 -26.73 -0.13 -0.81 16 5 C -0.15 -1.22 5.61 -90.61 -0.51 -1.73 16 6 C -0.18 -1.36 10.18 -26.73 -0.27 -1.63 16 7 C -0.18 -1.27 10.25 -26.73 -0.27 -1.55 16 8 N -0.75 -8.11 4.51 -58.68 -0.26 -8.38 16 9 C 0.70 10.75 8.53 -86.91 -0.74 10.01 16 10 O -0.59 -11.74 16.00 5.30 0.08 -11.65 16 11 N -0.74 -10.89 4.96 -65.23 -0.32 -11.21 16 12 C 0.15 2.67 4.56 -4.04 -0.02 2.65 16 13 C -0.07 -1.38 0.54 -154.51 -0.08 -1.46 16 14 C -0.13 -2.21 8.05 37.16 0.30 -1.91 16 15 C -0.13 -2.21 8.05 37.16 0.30 -1.91 16 16 C 0.04 0.88 4.04 -27.88 -0.11 0.77 16 17 C -0.51 -13.56 7.65 -34.44 -0.26 -13.82 16 18 H 0.06 1.53 5.68 -52.49 -0.30 1.23 16 19 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 20 N -0.89 -26.53 13.29 55.43 0.74 -25.79 16 21 Si 0.89 21.24 29.54 -169.99 -5.02 16.22 16 22 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 23 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 24 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 25 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 27 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 28 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.08 0.49 7.88 -51.93 -0.41 0.08 16 30 H 0.11 1.03 7.69 -51.93 -0.40 0.63 16 31 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 32 H 0.09 0.62 8.03 -51.93 -0.42 0.21 16 33 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.39 3.26 8.62 -40.82 -0.35 2.91 16 36 H 0.39 4.85 6.18 -40.82 -0.25 4.59 16 37 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 38 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 39 H 0.03 0.41 6.86 -51.93 -0.36 0.05 16 40 H 0.07 1.26 6.62 -51.93 -0.34 0.91 16 41 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 42 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 43 H 0.07 1.26 6.62 -51.93 -0.34 0.91 16 44 H 0.03 0.41 6.86 -51.93 -0.36 0.05 16 45 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 46 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 47 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 LS Contribution 372.38 15.07 5.61 5.61 Total: -1.00 -31.35 372.38 -9.46 -40.80 By element: Atomic # 1 Polarization: 12.66 SS G_CDS: -8.55 Total: 4.11 kcal Atomic # 6 Polarization: -7.98 SS G_CDS: -1.73 Total: -9.71 kcal Atomic # 7 Polarization: -45.53 SS G_CDS: 0.15 Total: -45.38 kcal Atomic # 8 Polarization: -11.74 SS G_CDS: 0.08 Total: -11.65 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -31.35 -9.46 -40.80 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353295737.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.301 kcal (2) G-P(sol) polarization free energy of solvation -31.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.803 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds