Wall clock time and date at job start Tue Mar 31 2020 05:59:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46900 * 109.46799 * 2 1 4 4 C 1.46904 * 110.99867 * 199.59320 * 3 2 1 5 5 C 1.52995 * 109.47109 * 66.04786 * 4 3 2 6 6 C 1.50706 * 109.46929 * 180.02562 * 5 4 3 7 7 O 1.21277 * 119.99886 * 359.97438 * 6 5 4 8 8 N 1.34770 * 120.00225 * 180.02562 * 6 5 4 9 9 C 1.46509 * 119.99722 * 359.97438 * 8 6 5 10 10 C 1.46498 * 120.00485 * 179.97438 * 8 6 5 11 11 C 1.50704 * 109.47324 * 89.99419 * 10 8 6 12 12 H 1.08000 * 119.99620 * 0.02562 * 11 10 8 13 13 C 1.37877 * 119.99884 * 180.02562 * 11 10 8 14 14 N 1.31513 * 120.00060 * 0.02562 * 13 11 10 15 15 Si 1.86798 * 119.99937 * 180.02562 * 13 11 10 16 16 H 1.48494 * 109.47328 * 89.99706 * 15 13 11 17 17 H 1.48499 * 109.47033 * 210.00380 * 15 13 11 18 18 H 1.48509 * 109.46869 * 329.99801 * 15 13 11 19 19 C 1.46897 * 110.99798 * 75.63786 * 3 2 1 20 20 C 1.52999 * 109.46917 * 199.70360 * 19 3 2 21 21 C 1.52998 * 109.47007 * 174.86272 * 20 19 3 22 22 C 1.53010 * 117.49328 * 243.74321 * 21 20 19 23 23 C 1.53004 * 117.49942 * 175.08832 * 21 20 19 24 24 H 1.08995 * 109.47428 * 294.83489 * 1 2 3 25 25 H 1.08999 * 109.47405 * 54.83814 * 1 2 3 26 26 H 1.09004 * 109.46821 * 174.83584 * 1 2 3 27 27 H 1.09005 * 109.46975 * 240.00372 * 2 1 3 28 28 H 1.08996 * 109.47173 * 120.00584 * 2 1 3 29 29 H 1.08997 * 109.46988 * 186.05091 * 4 3 2 30 30 H 1.09000 * 109.46648 * 306.04772 * 4 3 2 31 31 H 1.09004 * 109.47200 * 299.99778 * 5 4 3 32 32 H 1.08992 * 109.47431 * 60.00132 * 5 4 3 33 33 H 1.09004 * 109.46975 * 90.00375 * 9 8 6 34 34 H 1.09002 * 109.46872 * 209.99759 * 9 8 6 35 35 H 1.09000 * 109.47293 * 330.00025 * 9 8 6 36 36 H 1.08998 * 109.47357 * 209.99744 * 10 8 6 37 37 H 1.08997 * 109.46846 * 329.99886 * 10 8 6 38 38 H 0.97001 * 119.99588 * 179.97438 * 14 13 11 39 39 H 1.08996 * 109.47243 * 79.70463 * 19 3 2 40 40 H 1.09003 * 109.47347 * 319.69806 * 19 3 2 41 41 H 1.08994 * 109.47346 * 54.85640 * 20 19 3 42 42 H 1.09002 * 109.46975 * 294.85483 * 20 19 3 43 43 H 1.08994 * 115.55377 * 29.41005 * 21 20 19 44 44 H 1.08994 * 117.50235 * 0.02562 * 22 21 20 45 45 H 1.09006 * 117.49194 * 145.01872 * 22 21 20 46 46 H 1.09005 * 117.49886 * 214.97709 * 23 21 20 47 47 H 1.09004 * 117.49733 * 359.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4132 1.4507 -0.4599 5 6 3.4845 1.0395 -1.9318 6 6 4.9143 1.1063 -2.4034 7 8 5.7899 1.4495 -1.6377 8 7 5.2197 0.7857 -3.6763 9 6 4.1618 0.3717 -4.6014 10 6 6.6095 0.8512 -4.1350 11 6 7.2776 -0.4800 -3.9052 12 1 6.7223 -1.2935 -3.4622 13 6 8.5977 -0.6592 -4.2605 14 7 9.2740 0.3317 -4.7994 15 14 9.4257 -2.3094 -3.9764 16 1 9.2450 -3.1668 -5.1752 17 1 10.8752 -2.1002 -3.7311 18 1 8.8148 -2.9730 -2.7966 19 6 1.8743 1.9947 1.3286 20 6 1.9160 3.5185 1.1977 21 6 1.6371 4.1552 2.5606 22 6 0.3729 5.0064 2.6972 23 6 1.7483 5.6776 2.6653 24 1 -0.3634 0.4316 0.9326 25 1 -0.3634 0.5918 -0.8401 26 1 -0.3633 -1.0235 -0.0925 27 1 1.8933 -0.5138 -0.8901 28 1 1.8933 -0.5139 0.8899 29 1 3.7848 2.4693 -0.3488 30 1 4.0249 0.7737 0.1365 31 1 3.1129 0.0208 -2.0429 32 1 2.8728 1.7164 -2.5282 33 1 3.7610 1.2481 -5.1108 34 1 4.5726 -0.3198 -5.3371 35 1 3.3648 -0.1213 -4.0448 36 1 6.6304 1.0895 -5.1984 37 1 7.1395 1.6244 -3.5789 38 1 10.2028 0.2056 -5.0490 39 1 2.6893 1.6628 1.9717 40 1 0.9217 1.6935 1.7644 41 1 1.1593 3.8427 0.4834 42 1 2.9014 3.8263 0.8478 43 1 1.9440 3.5676 3.4258 44 1 -0.2601 5.1123 1.8163 45 1 -0.1515 4.9788 3.6525 46 1 2.1281 6.0915 3.5994 47 1 2.0206 6.2255 1.7631 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000355045850.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:39 Heat of formation + Delta-G solvation = -19.572055 kcal Electronic energy + Delta-G solvation = -22412.415124 eV Core-core repulsion = 19209.732301 eV Total energy + Delta-G solvation = -3202.682823 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.24588 -38.30497 -37.11253 -34.77154 -32.67330 -31.76615 -31.66659 -28.65965 -27.44688 -25.72994 -24.00955 -23.44154 -22.57463 -22.14404 -20.55755 -20.34646 -18.30858 -16.63605 -16.49167 -15.93929 -15.65352 -15.25280 -15.05229 -14.85672 -14.60699 -14.13878 -13.95940 -13.85951 -13.31390 -12.61943 -12.36962 -12.24283 -12.11722 -12.00377 -11.83523 -11.80835 -11.71905 -11.60140 -11.38956 -11.31807 -11.11627 -10.93229 -10.82428 -10.62490 -10.53173 -10.32173 -10.14490 -9.94876 -9.60903 -8.85011 -8.42513 -8.35017 -7.60398 -6.03056 -4.07757 3.30285 3.36718 3.40376 3.50052 3.57326 3.69533 4.15133 4.45871 4.58083 4.72828 4.74311 4.88102 5.01699 5.10323 5.15549 5.27165 5.30703 5.33282 5.35710 5.42362 5.43259 5.55497 5.60102 5.64095 5.69183 5.73582 5.78757 5.87690 5.90393 5.95221 5.97848 5.99942 6.06927 6.18281 6.23569 6.24838 6.25507 7.05569 7.07643 7.11392 7.47072 7.57545 7.93635 8.25398 8.46306 8.92075 9.13958 9.57304 11.05035 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.020976 B = 0.003172 C = 0.003005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1334.538516 B = 8825.100243 C = 9314.844972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.043 3.957 3 N -0.541 5.541 4 C 0.070 3.930 5 C -0.135 4.135 6 C 0.504 3.496 7 O -0.546 6.546 8 N -0.604 5.604 9 C 0.084 3.916 10 C 0.244 3.756 11 C -0.525 4.525 12 H 0.056 0.944 13 C 0.060 3.940 14 N -0.895 5.895 15 Si 0.898 3.102 16 H -0.280 1.280 17 H -0.285 1.285 18 H -0.274 1.274 19 C 0.059 3.941 20 C -0.085 4.085 21 C -0.150 4.150 22 C -0.182 4.182 23 C -0.182 4.182 24 H 0.050 0.950 25 H 0.063 0.937 26 H 0.055 0.945 27 H 0.077 0.923 28 H 0.033 0.967 29 H 0.083 0.917 30 H 0.042 0.958 31 H 0.085 0.915 32 H 0.092 0.908 33 H 0.044 0.956 34 H 0.072 0.928 35 H 0.057 0.943 36 H 0.031 0.969 37 H 0.043 0.957 38 H 0.263 0.737 39 H 0.035 0.965 40 H 0.073 0.927 41 H 0.072 0.928 42 H 0.068 0.932 43 H 0.101 0.899 44 H 0.094 0.906 45 H 0.090 0.910 46 H 0.091 0.909 47 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.099 4.161 10.227 22.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.085 4.085 3 N -0.266 5.266 4 C -0.057 4.057 5 C -0.175 4.175 6 C 0.290 3.710 7 O -0.424 6.424 8 N -0.336 5.336 9 C -0.060 4.060 10 C 0.125 3.875 11 C -0.564 4.564 12 H 0.074 0.926 13 C -0.142 4.142 14 N -0.534 5.534 15 Si 0.726 3.274 16 H -0.206 1.206 17 H -0.211 1.211 18 H -0.199 1.199 19 C -0.069 4.069 20 C -0.123 4.123 21 C -0.169 4.169 22 C -0.219 4.219 23 C -0.219 4.219 24 H 0.069 0.931 25 H 0.082 0.918 26 H 0.074 0.926 27 H 0.095 0.905 28 H 0.052 0.948 29 H 0.101 0.899 30 H 0.060 0.940 31 H 0.103 0.897 32 H 0.111 0.889 33 H 0.063 0.937 34 H 0.091 0.909 35 H 0.076 0.924 36 H 0.049 0.951 37 H 0.061 0.939 38 H 0.073 0.927 39 H 0.054 0.946 40 H 0.091 0.909 41 H 0.091 0.909 42 H 0.087 0.913 43 H 0.119 0.881 44 H 0.112 0.888 45 H 0.108 0.892 46 H 0.110 0.890 47 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -19.722 4.650 10.202 22.687 hybrid contribution 1.016 -1.446 0.579 1.860 sum -18.706 3.204 10.782 21.827 Atomic orbital electron populations 1.21763 0.95021 1.01248 1.02171 1.22164 0.95965 0.89189 1.01166 1.62026 1.20970 1.17783 1.25788 1.21844 0.87131 1.02526 0.94234 1.21669 0.95502 1.03138 0.97234 1.20326 0.90104 0.78171 0.82387 1.90660 1.50002 1.48080 1.53653 1.48160 1.10331 1.65157 1.09952 1.21628 0.90753 0.99388 0.94207 1.19277 0.75189 0.97980 0.95042 1.21436 0.96438 0.97609 1.40917 0.92554 1.24943 0.97062 0.97055 0.95119 1.69936 1.10005 1.31252 1.42235 0.86498 0.78698 0.83755 0.78474 1.20639 1.21072 1.19932 1.22081 1.00865 0.94570 0.89394 1.21160 1.02544 0.94180 0.94402 1.22295 1.02137 0.93127 0.99355 1.23040 0.90903 1.05001 1.02916 1.22971 1.00482 0.95254 1.03182 0.93073 0.91812 0.92592 0.90465 0.94834 0.89879 0.93975 0.89674 0.88932 0.93745 0.90902 0.92450 0.95061 0.93863 0.92729 0.94640 0.90857 0.90948 0.91349 0.88060 0.88771 0.89194 0.89015 0.88709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.25 9.95 37.16 0.37 -0.88 16 2 C 0.04 0.45 5.55 -3.82 -0.02 0.43 16 3 N -0.54 -6.38 4.37 -234.63 -1.02 -7.40 16 4 C 0.07 1.03 4.07 -3.82 -0.02 1.01 16 5 C -0.13 -2.03 4.22 -27.88 -0.12 -2.15 16 6 C 0.50 10.60 7.67 -10.99 -0.08 10.52 16 7 O -0.55 -13.90 15.56 5.56 0.09 -13.81 16 8 N -0.60 -13.04 2.86 -182.95 -0.52 -13.57 16 9 C 0.08 1.35 10.24 59.85 0.61 1.97 16 10 C 0.24 6.52 5.16 -5.19 -0.03 6.50 16 11 C -0.53 -15.13 9.39 -34.44 -0.32 -15.45 16 12 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 13 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 14 N -0.90 -26.95 13.29 55.43 0.74 -26.21 16 15 Si 0.90 22.09 29.54 -169.99 -5.02 17.07 16 16 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 17 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 18 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 19 C 0.06 0.62 4.77 -3.83 -0.02 0.60 16 20 C -0.09 -0.86 5.53 -26.73 -0.15 -1.01 16 21 C -0.15 -1.34 5.73 -90.61 -0.52 -1.86 16 22 C -0.18 -1.44 10.18 -26.69 -0.27 -1.71 16 23 C -0.18 -1.53 10.25 -26.69 -0.27 -1.81 16 24 H 0.05 0.42 6.89 -51.93 -0.36 0.07 16 25 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.08 0.84 5.88 -51.93 -0.31 0.53 16 28 H 0.03 0.36 8.00 -51.93 -0.42 -0.06 16 29 H 0.08 1.29 6.67 -51.93 -0.35 0.94 16 30 H 0.04 0.69 8.08 -51.93 -0.42 0.27 16 31 H 0.09 1.16 5.51 -51.93 -0.29 0.87 16 32 H 0.09 1.25 8.11 -51.93 -0.42 0.83 16 33 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 34 H 0.07 1.20 8.07 -51.93 -0.42 0.78 16 35 H 0.06 0.75 6.44 -51.93 -0.33 0.42 16 36 H 0.03 0.84 8.07 -51.93 -0.42 0.42 16 37 H 0.04 1.30 7.42 -51.93 -0.39 0.91 16 38 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 39 H 0.04 0.40 8.00 -51.93 -0.42 -0.02 16 40 H 0.07 0.69 6.55 -51.93 -0.34 0.35 16 41 H 0.07 0.75 7.88 -51.93 -0.41 0.34 16 42 H 0.07 0.79 6.96 -51.93 -0.36 0.43 16 43 H 0.10 0.87 8.07 -51.93 -0.42 0.45 16 44 H 0.09 0.73 8.03 -51.93 -0.42 0.31 16 45 H 0.09 0.63 8.14 -51.93 -0.42 0.20 16 46 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 47 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 374.72 15.07 5.65 5.65 Total: -1.00 -32.66 374.72 -9.59 -42.24 By element: Atomic # 1 Polarization: 6.80 SS G_CDS: -8.55 Total: -1.75 kcal Atomic # 6 Polarization: -1.27 SS G_CDS: -0.93 Total: -2.21 kcal Atomic # 7 Polarization: -46.37 SS G_CDS: -0.81 Total: -47.18 kcal Atomic # 8 Polarization: -13.90 SS G_CDS: 0.09 Total: -13.81 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -32.66 -9.59 -42.24 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355045850.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.671 kcal (2) G-P(sol) polarization free energy of solvation -32.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.243 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds