Wall clock time and date at job start Tue Mar 31 2020 05:59:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46900 * 109.47536 * 2 1 4 4 C 1.46890 * 111.00249 * 163.67552 * 3 2 1 5 5 C 1.53001 * 109.47277 * 287.97756 * 4 3 2 6 6 C 1.53006 * 109.47025 * 179.97438 * 5 4 3 7 7 C 1.52998 * 117.49605 * 243.62159 * 6 5 4 8 8 C 1.52997 * 117.49779 * 174.99842 * 6 5 4 9 9 C 1.46901 * 111.00024 * 287.63279 * 3 2 1 10 10 H 1.09001 * 109.46757 * 43.22868 * 9 3 2 11 11 C 1.52997 * 109.47171 * 283.22662 * 9 3 2 12 12 C 1.50699 * 109.47217 * 163.22295 * 9 3 2 13 13 O 1.21285 * 119.99821 * 20.23137 * 12 9 3 14 14 N 1.34769 * 120.00477 * 200.23076 * 12 9 3 15 15 C 1.46506 * 119.99649 * 4.84510 * 14 12 9 16 16 C 1.46494 * 120.00321 * 184.84786 * 14 12 9 17 17 C 1.50699 * 109.47198 * 89.99849 * 16 14 12 18 18 H 1.07990 * 120.00358 * 0.02562 * 17 16 14 19 19 C 1.37885 * 119.99761 * 180.02562 * 17 16 14 20 20 N 1.31510 * 120.00057 * 359.97438 * 19 17 16 21 21 Si 1.86796 * 119.99760 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.47360 * 60.00268 * 21 19 17 23 23 H 1.48504 * 109.46990 * 179.97438 * 21 19 17 24 24 H 1.48503 * 109.47420 * 299.99779 * 21 19 17 25 25 H 1.09001 * 109.46879 * 307.51428 * 1 2 3 26 26 H 1.08996 * 109.47020 * 67.51108 * 1 2 3 27 27 H 1.08997 * 109.47170 * 187.51203 * 1 2 3 28 28 H 1.08999 * 109.46896 * 239.99801 * 2 1 3 29 29 H 1.09001 * 109.47012 * 120.00549 * 2 1 3 30 30 H 1.09000 * 109.47775 * 167.97223 * 4 3 2 31 31 H 1.09002 * 109.47357 * 47.97508 * 4 3 2 32 32 H 1.08998 * 109.47420 * 60.00001 * 5 4 3 33 33 H 1.09004 * 109.46795 * 299.99601 * 5 4 3 34 34 H 1.08996 * 115.55312 * 29.32906 * 6 5 4 35 35 H 1.09001 * 117.50327 * 359.97438 * 7 6 5 36 36 H 1.08993 * 117.50002 * 145.02217 * 7 6 5 37 37 H 1.08992 * 117.50022 * 214.97950 * 8 6 5 38 38 H 1.09000 * 117.49971 * 0.02562 * 8 6 5 39 39 H 1.09003 * 109.47132 * 293.93122 * 11 9 3 40 40 H 1.09005 * 109.46800 * 53.93040 * 11 9 3 41 41 H 1.09003 * 109.47198 * 173.92686 * 11 9 3 42 42 H 1.08994 * 109.47221 * 91.69380 * 15 14 12 43 43 H 1.09005 * 109.47082 * 211.68606 * 15 14 12 44 44 H 1.08994 * 109.47173 * 331.68525 * 15 14 12 45 45 H 1.09004 * 109.47220 * 210.00073 * 16 14 12 46 46 H 1.08999 * 109.47192 * 329.99295 * 16 14 12 47 47 H 0.97007 * 119.99982 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0198 1.3850 0.0000 4 6 3.4360 1.4425 0.3854 5 6 3.5700 1.1482 1.8809 6 6 5.0453 1.2075 2.2822 7 6 5.6908 -0.0821 2.7931 8 6 5.3800 1.0559 3.7674 9 6 1.8036 2.0198 -1.3070 10 1 0.8080 1.7685 -1.6727 11 6 2.8537 1.5155 -2.2988 12 6 1.9239 3.5153 -1.1651 13 8 2.5097 3.9891 -0.2147 14 7 1.3805 4.3262 -2.0943 15 6 0.5826 3.7596 -3.1846 16 6 1.5876 5.7742 -2.0141 17 6 2.8308 6.1470 -2.7800 18 1 3.4085 5.3820 -3.2772 19 6 3.2306 7.4650 -2.8461 20 7 2.5267 8.3967 -2.2411 21 14 4.7719 7.9270 -3.7949 22 1 4.6163 7.5277 -5.2167 23 1 4.9817 9.3949 -3.7137 24 1 5.9426 7.2259 -3.2090 25 1 -0.3633 0.6258 0.8152 26 1 -0.3633 0.3931 -0.9495 27 1 -0.3633 -1.0188 0.1343 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 3.8301 2.4366 0.1741 31 1 3.9977 0.7008 -0.1825 32 1 3.1761 0.1541 2.0923 33 1 3.0085 1.8900 2.4489 34 1 5.6661 1.8822 1.6927 35 1 5.0645 -0.9727 2.8437 36 1 6.7365 -0.2561 2.5396 37 1 6.2212 1.6305 4.1549 38 1 4.5493 0.9135 4.4585 39 1 3.8407 1.8595 -1.9893 40 1 2.8391 0.4257 -2.3206 41 1 2.6295 1.9018 -3.2931 42 1 -0.4672 3.7364 -2.8926 43 1 0.6979 4.3750 -4.0770 44 1 0.9237 2.7461 -3.3957 45 1 0.7281 6.2886 -2.4440 46 1 1.7020 6.0677 -0.9706 47 1 2.8078 9.3240 -2.2879 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000355052843.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:58 Heat of formation + Delta-G solvation = -8.044755 kcal Electronic energy + Delta-G solvation = -23473.003957 eV Core-core repulsion = 20270.820995 eV Total energy + Delta-G solvation = -3202.182962 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.75907 -37.85073 -36.81245 -34.70793 -32.70012 -31.61407 -31.39393 -28.05393 -27.47872 -25.88220 -24.46021 -23.16898 -22.66010 -22.36810 -20.50421 -19.94664 -18.15499 -16.69118 -16.47542 -16.01790 -15.52121 -14.90215 -14.84687 -14.47591 -14.38297 -13.93907 -13.81496 -13.60818 -13.14098 -12.80621 -12.31063 -12.18862 -12.01561 -11.99827 -11.88191 -11.58755 -11.57505 -11.48107 -11.38940 -11.16160 -11.11736 -10.91621 -10.73744 -10.63920 -10.51826 -10.12486 -10.09855 -9.76250 -9.61057 -8.73288 -8.41205 -8.00095 -7.55525 -6.01872 -4.06894 3.32047 3.36718 3.38535 3.48431 3.74353 3.83112 4.27973 4.46013 4.78597 4.91728 4.95128 4.97602 5.07808 5.22185 5.27350 5.30590 5.33464 5.37140 5.50043 5.55957 5.58357 5.60190 5.66175 5.74033 5.82415 5.85671 5.90306 5.94928 5.96562 6.00055 6.07025 6.16976 6.20478 6.25100 6.31171 6.46538 6.51308 7.06061 7.25503 7.33286 7.51693 7.61248 7.95307 8.26769 8.50745 8.93474 9.20098 9.58278 11.05978 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.014619 B = 0.004824 C = 0.003976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1914.808313 B = 5802.418884 C = 7039.706407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.046 3.954 3 N -0.517 5.517 4 C 0.054 3.946 5 C -0.078 4.078 6 C -0.145 4.145 7 C -0.186 4.186 8 C -0.181 4.181 9 C 0.061 3.939 10 H 0.097 0.903 11 C -0.177 4.177 12 C 0.516 3.484 13 O -0.527 6.527 14 N -0.604 5.604 15 C 0.081 3.919 16 C 0.247 3.753 17 C -0.527 4.527 18 H 0.055 0.945 19 C 0.062 3.938 20 N -0.894 5.894 21 Si 0.897 3.103 22 H -0.277 1.277 23 H -0.286 1.286 24 H -0.277 1.277 25 H 0.065 0.935 26 H 0.051 0.949 27 H 0.055 0.945 28 H 0.033 0.967 29 H 0.074 0.926 30 H 0.101 0.899 31 H 0.027 0.973 32 H 0.055 0.945 33 H 0.076 0.924 34 H 0.105 0.895 35 H 0.090 0.910 36 H 0.089 0.911 37 H 0.091 0.909 38 H 0.092 0.908 39 H 0.066 0.934 40 H 0.059 0.941 41 H 0.069 0.931 42 H 0.043 0.957 43 H 0.072 0.928 44 H 0.057 0.943 45 H 0.030 0.970 46 H 0.045 0.955 47 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.124 -18.698 3.590 19.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.082 4.082 3 N -0.240 5.240 4 C -0.073 4.073 5 C -0.116 4.116 6 C -0.164 4.164 7 C -0.222 4.222 8 C -0.218 4.218 9 C -0.051 4.051 10 H 0.114 0.886 11 C -0.236 4.236 12 C 0.302 3.698 13 O -0.403 6.403 14 N -0.337 5.337 15 C -0.064 4.064 16 C 0.127 3.873 17 C -0.565 4.565 18 H 0.074 0.926 19 C -0.140 4.140 20 N -0.533 5.533 21 Si 0.724 3.276 22 H -0.203 1.203 23 H -0.212 1.212 24 H -0.202 1.202 25 H 0.084 0.916 26 H 0.071 0.929 27 H 0.074 0.926 28 H 0.051 0.949 29 H 0.093 0.907 30 H 0.119 0.881 31 H 0.045 0.955 32 H 0.074 0.926 33 H 0.094 0.906 34 H 0.123 0.877 35 H 0.108 0.892 36 H 0.107 0.893 37 H 0.110 0.890 38 H 0.111 0.889 39 H 0.085 0.915 40 H 0.078 0.922 41 H 0.088 0.912 42 H 0.062 0.938 43 H 0.091 0.909 44 H 0.076 0.924 45 H 0.048 0.952 46 H 0.063 0.937 47 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -1.108 -17.949 4.481 18.533 hybrid contribution 1.280 -0.129 -1.305 1.833 sum 0.173 -18.077 3.176 18.355 Atomic orbital electron populations 1.21798 0.95132 1.01206 1.02445 1.22162 0.96017 0.89357 1.00665 1.61865 1.19406 1.15971 1.26790 1.22268 0.87342 1.02925 0.94788 1.21101 0.92902 1.01258 0.96332 1.22317 0.97502 0.99962 0.96626 1.23016 1.01304 0.92826 1.05104 1.22924 1.03331 1.02565 0.92988 1.21698 1.00260 0.93801 0.89328 0.88551 1.22345 1.00334 1.00862 1.00069 1.20046 0.79556 0.87486 0.82717 1.90608 1.42188 1.76547 1.30973 1.48099 1.50537 1.09719 1.25335 1.21693 0.94474 0.98561 0.91642 1.19250 0.96363 0.72783 0.98872 1.21401 1.09869 0.92725 1.32550 0.92633 1.24927 0.97067 0.96315 0.95724 1.69926 1.39116 1.01042 1.43209 0.86588 0.83527 0.77301 0.80155 1.20297 1.21160 1.20242 0.91635 0.92948 0.92632 0.94864 0.90732 0.88119 0.95469 0.92644 0.90576 0.87696 0.89162 0.89250 0.89032 0.88949 0.91508 0.92166 0.91242 0.93813 0.90895 0.92425 0.95165 0.93728 0.92684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.53 9.85 37.16 0.37 -1.16 16 2 C 0.05 0.52 5.44 -3.82 -0.02 0.50 16 3 N -0.52 -7.67 4.15 -228.05 -0.95 -8.62 16 4 C 0.05 0.81 3.23 -3.83 -0.01 0.80 16 5 C -0.08 -1.04 5.56 -26.73 -0.15 -1.19 16 6 C -0.15 -1.79 5.74 -90.62 -0.52 -2.31 16 7 C -0.19 -1.90 10.18 -26.73 -0.27 -2.17 16 8 C -0.18 -1.96 10.25 -26.73 -0.27 -2.23 16 9 C 0.06 0.95 1.73 -68.87 -0.12 0.84 16 10 H 0.10 1.33 5.24 -51.93 -0.27 1.06 16 11 C -0.18 -2.46 8.01 37.16 0.30 -2.16 16 12 C 0.52 10.88 6.77 -10.99 -0.07 10.81 16 13 O -0.53 -13.24 13.87 5.55 0.08 -13.17 16 14 N -0.60 -12.98 2.86 -182.96 -0.52 -13.50 16 15 C 0.08 1.29 10.03 59.85 0.60 1.89 16 16 C 0.25 6.53 5.21 -5.20 -0.03 6.51 16 17 C -0.53 -14.96 9.39 -34.44 -0.32 -15.28 16 18 H 0.06 1.56 7.81 -52.49 -0.41 1.15 16 19 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 20 N -0.89 -26.75 13.29 55.43 0.74 -26.02 16 21 Si 0.90 21.89 29.54 -169.99 -5.02 16.87 16 22 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 23 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 24 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 25 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 26 H 0.05 0.53 6.82 -51.93 -0.35 0.18 16 27 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.03 0.36 6.59 -51.93 -0.34 0.01 16 29 H 0.07 0.79 6.29 -51.93 -0.33 0.47 16 30 H 0.10 1.89 5.68 -51.93 -0.30 1.60 16 31 H 0.03 0.37 7.29 -51.93 -0.38 -0.01 16 32 H 0.05 0.65 6.28 -51.93 -0.33 0.33 16 33 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 34 H 0.10 1.39 8.07 -51.93 -0.42 0.98 16 35 H 0.09 0.85 8.03 -51.93 -0.42 0.43 16 36 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 39 H 0.07 1.04 6.93 -51.93 -0.36 0.68 16 40 H 0.06 0.69 6.69 -51.93 -0.35 0.35 16 41 H 0.07 0.93 6.71 -51.93 -0.35 0.58 16 42 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.07 1.20 8.09 -51.93 -0.42 0.78 16 44 H 0.06 0.76 4.85 -51.93 -0.25 0.51 16 45 H 0.03 0.81 8.07 -51.93 -0.42 0.39 16 46 H 0.04 1.34 7.36 -51.93 -0.38 0.96 16 47 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 363.97 15.07 5.48 5.48 Total: -1.00 -32.15 363.97 -8.98 -41.13 By element: Atomic # 1 Polarization: 9.46 SS G_CDS: -8.16 Total: 1.30 kcal Atomic # 6 Polarization: -2.86 SS G_CDS: -0.62 Total: -3.49 kcal Atomic # 7 Polarization: -47.40 SS G_CDS: -0.73 Total: -48.13 kcal Atomic # 8 Polarization: -13.24 SS G_CDS: 0.08 Total: -13.17 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -32.15 -8.98 -41.13 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355052843.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.085 kcal (2) G-P(sol) polarization free energy of solvation -32.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.129 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds