Wall clock time and date at job start Tue Mar 31 2020 06:00:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46890 * 109.47117 * 2 1 4 4 C 1.46900 * 111.00104 * 68.18705 * 3 2 1 5 5 C 1.53000 * 109.47408 * 70.57016 * 4 3 2 6 6 C 1.52999 * 109.46977 * 183.91927 * 5 4 3 7 7 C 1.53004 * 117.49631 * 243.62051 * 6 5 4 8 8 C 1.53002 * 117.49525 * 174.99823 * 6 5 4 9 9 C 1.46902 * 111.00223 * 304.23162 * 3 2 1 10 10 H 1.08995 * 109.47328 * 58.89075 * 9 3 2 11 11 C 1.52995 * 109.47157 * 178.89783 * 9 3 2 12 12 C 1.50709 * 109.46715 * 298.89436 * 9 3 2 13 13 O 1.21274 * 120.00330 * 345.13679 * 12 9 3 14 14 N 1.34777 * 119.99503 * 165.13507 * 12 9 3 15 15 C 1.46500 * 119.99970 * 4.91937 * 14 12 9 16 16 C 1.46501 * 119.99491 * 184.63839 * 14 12 9 17 17 C 1.50698 * 109.47399 * 270.27501 * 16 14 12 18 18 H 1.08002 * 119.99998 * 0.02562 * 17 16 14 19 19 C 1.37876 * 119.99974 * 180.02562 * 17 16 14 20 20 N 1.31509 * 120.00052 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 119.99980 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47175 * 89.99941 * 21 19 17 23 23 H 1.48501 * 109.47273 * 210.00185 * 21 19 17 24 24 H 1.48501 * 109.47108 * 329.99852 * 21 19 17 25 25 H 1.09000 * 109.47146 * 185.64909 * 1 2 3 26 26 H 1.08998 * 109.46938 * 305.65079 * 1 2 3 27 27 H 1.09000 * 109.47061 * 65.65721 * 1 2 3 28 28 H 1.09004 * 109.47083 * 239.99764 * 2 1 3 29 29 H 1.08998 * 109.46821 * 120.00300 * 2 1 3 30 30 H 1.09004 * 109.47286 * 190.57539 * 4 3 2 31 31 H 1.09004 * 109.46853 * 310.57002 * 4 3 2 32 32 H 1.09003 * 109.46673 * 303.91772 * 5 4 3 33 33 H 1.08999 * 109.47023 * 63.91893 * 5 4 3 34 34 H 1.08993 * 115.55123 * 29.33180 * 6 5 4 35 35 H 1.09002 * 117.50030 * 0.02562 * 7 6 5 36 36 H 1.08999 * 117.49926 * 145.02356 * 7 6 5 37 37 H 1.08994 * 117.50342 * 214.97774 * 8 6 5 38 38 H 1.09007 * 117.50001 * 0.02562 * 8 6 5 39 39 H 1.08999 * 109.46860 * 289.04622 * 11 9 3 40 40 H 1.09001 * 109.47545 * 49.04411 * 11 9 3 41 41 H 1.09000 * 109.46968 * 169.04682 * 11 9 3 42 42 H 1.08996 * 109.47076 * 266.78149 * 15 14 12 43 43 H 1.09000 * 109.47340 * 26.79195 * 15 14 12 44 44 H 1.09003 * 109.46615 * 146.78814 * 15 14 12 45 45 H 1.08999 * 109.47170 * 30.28216 * 16 14 12 46 46 H 1.09003 * 109.46546 * 150.27591 * 16 14 12 47 47 H 0.97001 * 120.00429 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3849 0.0000 4 6 1.7147 2.0511 1.2732 5 6 2.5899 1.4604 2.3804 6 6 2.2043 2.0847 3.7230 7 6 3.2636 2.9216 4.4431 8 6 2.8876 1.5384 4.9783 9 6 1.4678 2.1385 -1.1339 10 1 0.3793 2.1357 -1.0767 11 6 1.9775 3.5802 -1.0845 12 6 1.9046 1.4951 -2.4248 13 8 2.8086 0.6866 -2.4239 14 7 1.2906 1.8182 -3.5802 15 6 0.2732 2.8721 -3.5992 16 6 1.6451 1.1198 -4.8183 17 6 2.7741 1.8483 -5.5006 18 1 3.1867 2.7421 -5.0562 19 6 3.2804 1.3740 -6.6920 20 7 2.7777 0.2860 -7.2334 21 14 4.6803 2.2767 -7.5374 22 1 5.9782 1.7375 -7.0577 23 1 4.5773 2.0852 -9.0064 24 1 4.5984 3.7251 -7.2202 25 1 -0.3633 -1.0227 0.1012 26 1 -0.3633 0.5990 0.8351 27 1 -0.3633 0.4236 -0.9363 28 1 1.8934 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 1.9154 3.1186 1.1820 31 1 0.6640 1.8988 1.5204 32 1 2.4404 0.3816 2.4251 33 1 3.6376 1.6736 2.1681 34 1 1.1654 2.4016 3.8130 35 1 4.2351 3.0277 3.9602 36 1 2.9216 3.7895 5.0070 37 1 2.2982 1.4963 5.8942 38 1 3.6120 0.7345 4.8476 39 1 1.5052 4.1042 -0.2536 40 1 3.0586 3.5788 -0.9458 41 1 1.7317 4.0846 -2.0190 42 1 -0.7133 2.4271 -3.4696 43 1 0.4638 3.5758 -2.7890 44 1 0.3122 3.3975 -4.5535 45 1 1.9580 0.1021 -4.5845 46 1 0.7792 1.0907 -5.4797 47 1 3.1336 -0.0476 -8.0718 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000355052844.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:00 Heat of formation + Delta-G solvation = 0.227185 kcal Electronic energy + Delta-G solvation = -23347.732667 eV Core-core repulsion = 20145.908404 eV Total energy + Delta-G solvation = -3201.824264 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.83605 -38.06421 -36.83828 -34.72331 -32.79931 -31.79468 -31.18951 -28.12644 -27.37743 -25.96832 -24.42645 -23.52123 -22.56168 -22.49400 -20.67138 -19.86638 -18.12360 -16.64083 -16.47859 -16.10616 -15.58803 -15.40985 -15.13482 -14.59924 -14.30508 -14.04277 -13.58123 -13.28087 -13.21009 -12.80892 -12.64432 -12.28496 -12.09804 -11.94830 -11.88208 -11.76203 -11.65072 -11.43092 -11.30249 -11.22084 -11.05891 -10.86793 -10.78936 -10.55154 -10.49867 -10.39885 -10.10758 -9.87620 -9.56707 -8.72758 -8.39856 -8.00761 -7.55969 -6.00534 -4.04731 3.34121 3.39976 3.41502 3.50189 3.57775 3.73675 4.23043 4.48655 4.60406 4.73899 4.75426 5.00815 5.04946 5.15186 5.20976 5.31267 5.34504 5.38852 5.39370 5.42299 5.43566 5.58023 5.59752 5.64626 5.72144 5.77711 5.83714 5.87066 5.91965 5.94853 6.03126 6.09977 6.14666 6.21435 6.25224 6.40810 6.49777 7.02552 7.23400 7.29727 7.47495 7.60930 7.96426 8.27916 8.49334 8.95724 9.20152 9.60364 11.07553 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.025200 B = 0.003661 C = 0.003520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1110.858416 B = 7646.141042 C = 7951.982196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.041 3.959 3 N -0.512 5.512 4 C 0.050 3.950 5 C -0.084 4.084 6 C -0.149 4.149 7 C -0.181 4.181 8 C -0.183 4.183 9 C 0.063 3.937 10 H 0.059 0.941 11 C -0.149 4.149 12 C 0.510 3.490 13 O -0.520 6.520 14 N -0.605 5.605 15 C 0.073 3.927 16 C 0.248 3.752 17 C -0.522 4.522 18 H 0.057 0.943 19 C 0.060 3.940 20 N -0.897 5.897 21 Si 0.898 3.102 22 H -0.279 1.279 23 H -0.286 1.286 24 H -0.275 1.275 25 H 0.060 0.940 26 H 0.053 0.947 27 H 0.055 0.945 28 H 0.095 0.905 29 H 0.073 0.927 30 H 0.078 0.922 31 H 0.035 0.965 32 H 0.067 0.933 33 H 0.072 0.928 34 H 0.101 0.899 35 H 0.095 0.905 36 H 0.090 0.910 37 H 0.090 0.910 38 H 0.093 0.907 39 H 0.060 0.940 40 H 0.072 0.928 41 H 0.073 0.927 42 H 0.041 0.959 43 H 0.065 0.935 44 H 0.072 0.928 45 H 0.041 0.959 46 H 0.031 0.969 47 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.287 5.456 20.038 21.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.250 4.250 2 C -0.086 4.086 3 N -0.236 5.236 4 C -0.078 4.078 5 C -0.122 4.122 6 C -0.168 4.168 7 C -0.218 4.218 8 C -0.220 4.220 9 C -0.049 4.049 10 H 0.077 0.923 11 C -0.207 4.207 12 C 0.295 3.705 13 O -0.395 6.395 14 N -0.338 5.338 15 C -0.071 4.071 16 C 0.129 3.871 17 C -0.561 4.561 18 H 0.075 0.925 19 C -0.142 4.142 20 N -0.536 5.536 21 Si 0.725 3.275 22 H -0.205 1.205 23 H -0.212 1.212 24 H -0.199 1.199 25 H 0.079 0.921 26 H 0.072 0.928 27 H 0.074 0.926 28 H 0.113 0.887 29 H 0.091 0.909 30 H 0.097 0.903 31 H 0.053 0.947 32 H 0.085 0.915 33 H 0.091 0.909 34 H 0.119 0.881 35 H 0.113 0.887 36 H 0.109 0.891 37 H 0.109 0.891 38 H 0.112 0.888 39 H 0.079 0.921 40 H 0.091 0.909 41 H 0.092 0.908 42 H 0.059 0.941 43 H 0.083 0.917 44 H 0.091 0.909 45 H 0.059 0.941 46 H 0.049 0.951 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -5.270 4.881 19.782 21.046 hybrid contribution -0.263 0.550 -0.477 0.774 sum -5.534 5.430 19.305 20.804 Atomic orbital electron populations 1.22431 0.98890 1.02172 1.01539 1.22338 0.92152 0.90083 1.04060 1.61918 1.58932 1.01927 1.00810 1.22220 0.97269 0.99253 0.89052 1.21153 1.00457 0.99799 0.90754 1.22310 0.97624 1.03801 0.93081 1.23038 1.00094 0.94454 1.04234 1.22952 1.04004 0.97486 0.97566 1.21627 0.97637 0.94669 0.90946 0.92305 1.21992 1.03054 0.93395 1.02228 1.20069 0.82942 0.83085 0.84382 1.90646 1.28241 1.34492 1.86151 1.48143 1.38723 1.37237 1.09718 1.21849 0.90951 0.91173 1.03089 1.19242 0.95648 0.93247 0.78985 1.21435 1.17739 1.11121 1.05821 0.92480 1.24935 0.97002 0.95085 0.97150 1.69929 1.42220 1.22055 1.19392 0.86506 0.82659 0.79955 0.78339 1.20542 1.21215 1.19947 0.92141 0.92841 0.92583 0.88663 0.90860 0.90331 0.94701 0.91469 0.90939 0.88103 0.88664 0.89148 0.89110 0.88808 0.92101 0.90893 0.90789 0.94055 0.91656 0.90877 0.94099 0.95137 0.92782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.41 9.12 37.16 0.34 -2.07 16 2 C 0.04 0.61 5.53 -3.83 -0.02 0.59 16 3 N -0.51 -7.65 4.26 -228.04 -0.97 -8.62 16 4 C 0.05 0.57 4.62 -3.82 -0.02 0.55 16 5 C -0.08 -0.88 5.60 -26.73 -0.15 -1.03 16 6 C -0.15 -1.32 5.74 -90.62 -0.52 -1.84 16 7 C -0.18 -1.49 10.18 -26.73 -0.27 -1.76 16 8 C -0.18 -1.48 10.25 -26.73 -0.27 -1.75 16 9 C 0.06 0.98 1.20 -68.86 -0.08 0.90 16 10 H 0.06 0.83 5.81 -51.93 -0.30 0.53 16 11 C -0.15 -2.02 7.99 37.16 0.30 -1.72 16 12 C 0.51 10.77 6.33 -10.98 -0.07 10.70 16 13 O -0.52 -13.31 14.36 5.56 0.08 -13.23 16 14 N -0.60 -12.99 2.86 -182.95 -0.52 -13.51 16 15 C 0.07 1.18 9.84 59.85 0.59 1.77 16 16 C 0.25 6.57 5.13 -5.19 -0.03 6.55 16 17 C -0.52 -15.04 9.38 -34.44 -0.32 -15.36 16 18 H 0.06 1.65 7.81 -52.49 -0.41 1.24 16 19 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 20 N -0.90 -26.98 13.29 55.43 0.74 -26.25 16 21 Si 0.90 22.21 29.54 -169.99 -5.02 17.18 16 22 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 23 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 24 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 25 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.05 0.59 6.23 -51.93 -0.32 0.27 16 27 H 0.06 0.77 6.66 -51.93 -0.35 0.43 16 28 H 0.10 1.76 6.10 -51.93 -0.32 1.44 16 29 H 0.07 0.96 6.31 -51.93 -0.33 0.63 16 30 H 0.08 0.86 5.72 -51.93 -0.30 0.56 16 31 H 0.03 0.37 6.09 -51.93 -0.32 0.06 16 32 H 0.07 0.73 6.43 -51.93 -0.33 0.40 16 33 H 0.07 0.84 7.88 -51.93 -0.41 0.43 16 34 H 0.10 0.83 8.07 -51.93 -0.42 0.41 16 35 H 0.09 0.81 8.03 -51.93 -0.42 0.39 16 36 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.06 0.64 6.69 -51.93 -0.35 0.29 16 40 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 41 H 0.07 1.00 5.67 -51.93 -0.29 0.71 16 42 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 43 H 0.07 0.87 4.28 -51.93 -0.22 0.65 16 44 H 0.07 1.21 8.09 -51.93 -0.42 0.79 16 45 H 0.04 1.22 7.50 -51.93 -0.39 0.83 16 46 H 0.03 0.82 8.07 -51.93 -0.42 0.40 16 47 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 360.57 15.07 5.43 5.43 Total: -1.00 -32.77 360.57 -8.87 -41.65 By element: Atomic # 1 Polarization: 8.15 SS G_CDS: -7.98 Total: 0.17 kcal Atomic # 6 Polarization: -2.21 SS G_CDS: -0.63 Total: -2.84 kcal Atomic # 7 Polarization: -47.62 SS G_CDS: -0.76 Total: -48.37 kcal Atomic # 8 Polarization: -13.31 SS G_CDS: 0.08 Total: -13.23 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.18 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -32.77 -8.87 -41.65 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355052844.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.876 kcal (2) G-P(sol) polarization free energy of solvation -32.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.649 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds