Wall clock time and date at job start Tue Mar 31 2020 05:59:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46900 * 109.46975 * 2 1 4 4 C 1.46897 * 111.00113 * 59.23376 * 3 2 1 5 5 C 1.52998 * 109.47331 * 66.04783 * 4 3 2 6 6 C 1.52993 * 109.47663 * 179.97438 * 5 4 3 7 7 C 1.52991 * 117.50536 * 243.74740 * 6 5 4 8 8 C 1.52998 * 117.50451 * 175.08046 * 6 5 4 9 9 C 1.46899 * 110.99903 * 295.27858 * 3 2 1 10 10 C 1.50699 * 109.47104 * 288.16593 * 9 3 2 11 11 O 1.21284 * 120.00237 * 354.25795 * 10 9 3 12 12 N 1.34777 * 120.00325 * 174.25710 * 10 9 3 13 13 C 1.46508 * 119.99537 * 0.02562 * 12 10 9 14 14 C 1.52996 * 109.47425 * 89.99696 * 13 12 10 15 15 C 1.46497 * 120.00655 * 179.97438 * 12 10 9 16 16 C 1.50699 * 109.47110 * 89.99860 * 15 12 10 17 17 H 1.08000 * 120.00171 * 0.02562 * 16 15 12 18 18 C 1.37880 * 120.00196 * 180.02562 * 16 15 12 19 19 N 1.31512 * 119.99478 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 120.00091 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.46893 * 359.97438 * 20 18 16 22 22 H 1.48493 * 109.47255 * 119.99843 * 20 18 16 23 23 H 1.48504 * 109.46851 * 239.99977 * 20 18 16 24 24 H 1.09003 * 109.47712 * 299.96209 * 1 2 3 25 25 H 1.09005 * 109.47481 * 59.96120 * 1 2 3 26 26 H 1.09002 * 109.47598 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.46798 * 239.99842 * 2 1 3 28 28 H 1.09004 * 109.46601 * 119.99814 * 2 1 3 29 29 H 1.08999 * 109.47358 * 306.04174 * 4 3 2 30 30 H 1.09000 * 109.46760 * 186.04191 * 4 3 2 31 31 H 1.08999 * 109.47397 * 59.99415 * 5 4 3 32 32 H 1.09007 * 109.46971 * 300.00091 * 5 4 3 33 33 H 1.09011 * 115.54671 * 29.41500 * 6 5 4 34 34 H 1.09003 * 117.49553 * 359.97438 * 7 6 5 35 35 H 1.08997 * 117.50473 * 145.01693 * 7 6 5 36 36 H 1.09000 * 117.50085 * 214.98163 * 8 6 5 37 37 H 1.09002 * 117.49662 * 0.02562 * 8 6 5 38 38 H 1.08992 * 109.47438 * 48.16418 * 9 3 2 39 39 H 1.09002 * 109.47302 * 168.16706 * 9 3 2 40 40 H 1.09004 * 109.46391 * 209.99948 * 13 12 10 41 41 H 1.08994 * 109.46672 * 329.99528 * 13 12 10 42 42 H 1.09002 * 109.46919 * 59.99735 * 14 13 12 43 43 H 1.09003 * 109.47186 * 179.97438 * 14 13 12 44 44 H 1.08993 * 109.47147 * 299.99848 * 14 13 12 45 45 H 1.08997 * 109.47359 * 210.00514 * 15 12 10 46 46 H 1.09000 * 109.46924 * 330.00126 * 15 12 10 47 47 H 0.97006 * 119.99426 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.5337 2.1152 1.1784 5 6 2.1494 1.5115 2.4422 6 6 1.6439 2.2723 3.6695 7 6 2.6757 3.0361 4.5018 8 6 2.0558 1.7465 5.0459 9 6 1.6429 2.0765 -1.2401 10 6 2.4633 1.5388 -2.3842 11 8 3.3522 0.7417 -2.1710 12 7 2.2092 1.9436 -3.6444 13 6 1.1358 2.9069 -3.9018 14 6 1.6981 4.3280 -3.8313 15 6 3.0070 1.4214 -4.7565 16 6 2.3596 0.1720 -5.2960 17 1 1.4451 -0.1959 -4.8548 18 6 2.9348 -0.5014 -6.3528 19 7 4.0481 -0.0530 -6.8903 20 14 2.1318 -2.0496 -7.0219 21 1 0.8975 -2.3406 -6.2492 22 1 1.7855 -1.8492 -8.4519 23 1 3.0746 -3.1901 -6.8960 24 1 -0.3634 0.5132 0.8903 25 1 -0.3634 0.5144 -0.8897 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8932 -0.5138 -0.8899 28 1 1.8932 -0.5138 0.8901 29 1 0.4476 2.0385 1.2310 30 1 1.8205 3.1638 1.0997 31 1 3.2355 1.5882 2.3896 32 1 1.8627 0.4628 2.5208 33 1 0.6500 2.7101 3.5748 34 1 3.7149 2.9961 4.1753 35 1 2.3607 3.9760 4.9550 36 1 1.3333 1.8387 5.8568 37 1 2.6875 0.8587 5.0772 38 1 0.5849 1.9100 -1.4420 39 1 1.8282 3.1451 -1.1309 40 1 0.7189 2.7298 -4.8933 41 1 0.3535 2.7880 -3.1522 42 1 2.4804 4.4468 -4.5809 43 1 0.8995 5.0447 -4.0234 44 1 2.1149 4.5051 -2.8399 45 1 3.0644 2.1708 -5.5459 46 1 4.0116 1.1870 -4.4044 47 1 4.4530 -0.5270 -7.6336 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000355062525.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:41 Heat of formation + Delta-G solvation = -10.225261 kcal Electronic energy + Delta-G solvation = -23056.573137 eV Core-core repulsion = 19854.295621 eV Total energy + Delta-G solvation = -3202.277516 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.47883 -38.12237 -36.84210 -35.09336 -32.78197 -31.06861 -30.28663 -29.95540 -27.52347 -25.68401 -24.08927 -22.98495 -22.57333 -22.48277 -20.73862 -19.92412 -18.08471 -16.57047 -16.31361 -16.10916 -15.97324 -15.40848 -15.08309 -14.61441 -14.29088 -13.83943 -13.57100 -13.37671 -13.25002 -12.99623 -12.57121 -12.36723 -12.11313 -11.94434 -11.77406 -11.74031 -11.60129 -11.43102 -11.33910 -11.18164 -11.00978 -10.86054 -10.71735 -10.56963 -10.47771 -10.39128 -10.08561 -9.91934 -9.56643 -8.80851 -8.40676 -7.98981 -7.56949 -6.01075 -4.05437 3.31008 3.38406 3.41697 3.54963 3.58385 3.73844 4.26213 4.48059 4.61845 4.73355 4.75032 5.04425 5.08536 5.15964 5.23846 5.30619 5.33700 5.39104 5.41491 5.43579 5.50113 5.56097 5.60532 5.63594 5.68804 5.72796 5.79812 5.86045 5.91351 6.02484 6.04245 6.07762 6.18072 6.24138 6.26640 6.47273 6.51425 7.03268 7.22615 7.28271 7.51718 7.63628 7.96555 8.28406 8.52993 8.95719 9.23789 9.59851 11.06938 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.022446 B = 0.003703 C = 0.003450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1247.138199 B = 7558.690023 C = 8114.430539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.047 3.953 3 N -0.517 5.517 4 C 0.055 3.945 5 C -0.085 4.085 6 C -0.149 4.149 7 C -0.181 4.181 8 C -0.183 4.183 9 C 0.033 3.967 10 C 0.506 3.494 11 O -0.522 6.522 12 N -0.602 5.602 13 C 0.107 3.893 14 C -0.169 4.169 15 C 0.248 3.752 16 C -0.523 4.523 17 H 0.056 0.944 18 C 0.060 3.940 19 N -0.895 5.895 20 Si 0.897 3.103 21 H -0.274 1.274 22 H -0.284 1.284 23 H -0.283 1.283 24 H 0.055 0.945 25 H 0.055 0.945 26 H 0.060 0.940 27 H 0.090 0.910 28 H 0.074 0.926 29 H 0.037 0.963 30 H 0.071 0.929 31 H 0.073 0.927 32 H 0.067 0.933 33 H 0.101 0.899 34 H 0.095 0.905 35 H 0.090 0.910 36 H 0.091 0.909 37 H 0.093 0.907 38 H 0.060 0.940 39 H 0.093 0.907 40 H 0.081 0.919 41 H 0.061 0.939 42 H 0.061 0.939 43 H 0.058 0.942 44 H 0.050 0.950 45 H 0.030 0.970 46 H 0.043 0.957 47 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.530 7.780 17.732 21.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.252 4.252 2 C -0.081 4.081 3 N -0.240 5.240 4 C -0.073 4.073 5 C -0.123 4.123 6 C -0.168 4.168 7 C -0.218 4.218 8 C -0.220 4.220 9 C -0.098 4.098 10 C 0.292 3.708 11 O -0.398 6.398 12 N -0.335 5.335 13 C -0.017 4.017 14 C -0.227 4.227 15 C 0.128 3.872 16 C -0.562 4.562 17 H 0.074 0.926 18 C -0.142 4.142 19 N -0.534 5.534 20 Si 0.724 3.276 21 H -0.199 1.199 22 H -0.210 1.210 23 H -0.209 1.209 24 H 0.074 0.926 25 H 0.074 0.926 26 H 0.079 0.921 27 H 0.108 0.892 28 H 0.093 0.907 29 H 0.055 0.945 30 H 0.090 0.910 31 H 0.092 0.908 32 H 0.086 0.914 33 H 0.119 0.881 34 H 0.114 0.886 35 H 0.109 0.891 36 H 0.109 0.891 37 H 0.112 0.888 38 H 0.078 0.922 39 H 0.111 0.889 40 H 0.099 0.901 41 H 0.079 0.921 42 H 0.080 0.920 43 H 0.077 0.923 44 H 0.069 0.931 45 H 0.048 0.952 46 H 0.061 0.939 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -7.382 7.294 17.698 20.516 hybrid contribution -1.409 -0.712 -0.557 1.674 sum -8.790 6.582 17.141 20.357 Atomic orbital electron populations 1.22447 0.98904 1.02370 1.01496 1.22243 0.91984 0.89919 1.03965 1.61812 1.59466 1.02210 1.00465 1.22143 0.97249 0.97964 0.89910 1.21159 1.01144 0.98889 0.91103 1.22297 0.99263 1.03289 0.91973 1.23050 0.98753 0.95649 1.04354 1.22963 1.03986 0.98153 0.96910 1.22124 0.98165 0.99209 0.90316 1.20154 0.84883 0.82374 0.83405 1.90658 1.31986 1.33419 1.83733 1.48266 1.34689 1.43002 1.07535 1.21387 0.89855 0.88186 1.02305 1.22222 1.01551 0.96928 1.02029 1.19227 0.91693 0.93677 0.82562 1.21477 1.09590 1.09743 1.15385 0.92553 1.24936 0.94937 0.97667 0.96619 1.69947 1.18750 1.40016 1.24689 0.86467 0.79385 0.83219 0.78484 1.19868 1.21021 1.20892 0.92627 0.92587 0.92059 0.89165 0.90719 0.94493 0.91014 0.90813 0.91443 0.88079 0.88643 0.89127 0.89097 0.88803 0.92212 0.88917 0.90092 0.92066 0.92019 0.92304 0.93102 0.95184 0.93937 0.92833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.39 9.26 37.16 0.34 -2.05 16 2 C 0.05 0.70 5.52 -3.83 -0.02 0.67 16 3 N -0.52 -7.75 4.31 -236.08 -1.02 -8.76 16 4 C 0.06 0.63 4.65 -3.83 -0.02 0.61 16 5 C -0.09 -0.89 5.42 -26.74 -0.14 -1.04 16 6 C -0.15 -1.31 5.73 -90.63 -0.52 -1.83 16 7 C -0.18 -1.50 10.18 -26.70 -0.27 -1.77 16 8 C -0.18 -1.48 10.26 -26.69 -0.27 -1.75 16 9 C 0.03 0.51 4.06 -4.98 -0.02 0.49 16 10 C 0.51 10.68 7.25 -10.99 -0.08 10.60 16 11 O -0.52 -13.39 14.71 5.55 0.08 -13.31 16 12 N -0.60 -12.80 2.46 -175.06 -0.43 -13.23 16 13 C 0.11 1.72 5.96 -4.04 -0.02 1.70 16 14 C -0.17 -2.28 10.24 37.16 0.38 -1.90 16 15 C 0.25 6.54 5.16 -5.20 -0.03 6.51 16 16 C -0.52 -14.93 9.39 -34.44 -0.32 -15.25 16 17 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 18 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 19 N -0.89 -26.85 13.29 55.43 0.74 -26.11 16 20 Si 0.90 22.03 29.54 -169.99 -5.02 17.01 16 21 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 22 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 23 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 24 H 0.05 0.60 6.26 -51.93 -0.33 0.27 16 25 H 0.06 0.73 6.29 -51.93 -0.33 0.40 16 26 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.09 1.69 6.55 -51.93 -0.34 1.35 16 28 H 0.07 1.02 6.51 -51.93 -0.34 0.68 16 29 H 0.04 0.39 5.98 -51.93 -0.31 0.08 16 30 H 0.07 0.78 7.86 -51.93 -0.41 0.37 16 31 H 0.07 0.86 7.87 -51.93 -0.41 0.46 16 32 H 0.07 0.72 6.57 -51.93 -0.34 0.38 16 33 H 0.10 0.83 8.08 -51.92 -0.42 0.41 16 34 H 0.10 0.82 8.03 -51.93 -0.42 0.40 16 35 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.06 0.84 4.91 -51.93 -0.26 0.59 16 39 H 0.09 1.25 7.07 -51.93 -0.37 0.89 16 40 H 0.08 1.36 8.07 -51.93 -0.42 0.94 16 41 H 0.06 0.83 6.28 -51.93 -0.33 0.50 16 42 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 43 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 44 H 0.05 0.65 7.40 -51.93 -0.38 0.27 16 45 H 0.03 0.80 8.07 -51.93 -0.42 0.38 16 46 H 0.04 1.28 7.42 -51.93 -0.39 0.89 16 47 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 368.35 15.07 5.55 5.55 Total: -1.00 -32.62 368.35 -9.47 -42.09 By element: Atomic # 1 Polarization: 8.41 SS G_CDS: -8.27 Total: 0.14 kcal Atomic # 6 Polarization: -2.28 SS G_CDS: -1.10 Total: -3.37 kcal Atomic # 7 Polarization: -47.39 SS G_CDS: -0.71 Total: -48.10 kcal Atomic # 8 Polarization: -13.39 SS G_CDS: 0.08 Total: -13.31 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -32.62 -9.47 -42.09 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355062525.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.864 kcal (2) G-P(sol) polarization free energy of solvation -32.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds