Wall clock time and date at job start Tue Mar 31 2020 05:26:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47425 * 2 1 4 4 C 1.53002 * 109.47169 * 239.99891 * 2 1 3 5 5 C 1.53002 * 109.47014 * 295.42576 * 4 2 1 6 6 H 1.09002 * 109.47011 * 56.08443 * 5 4 2 7 7 C 1.53003 * 109.46762 * 176.08319 * 5 4 2 8 8 N 1.46493 * 109.47041 * 296.08470 * 5 4 2 9 9 C 1.46508 * 119.99829 * 303.74483 * 8 5 4 10 10 C 1.34773 * 120.00395 * 123.74941 * 8 5 4 11 11 O 1.21284 * 119.99818 * 0.02562 * 10 8 5 12 12 C 1.50694 * 120.00293 * 179.97438 * 10 8 5 13 13 N 1.46504 * 109.47076 * 179.97438 * 12 10 8 14 14 C 1.36935 * 120.00142 * 269.99952 * 13 12 10 15 15 H 1.08008 * 119.99978 * 191.07850 * 14 13 12 16 16 C 1.38814 * 119.99838 * 11.08347 * 14 13 12 17 17 N 1.31617 * 120.00060 * 23.86725 * 16 14 13 18 18 Si 1.86797 * 119.99717 * 203.86323 * 16 14 13 19 19 H 1.48501 * 109.46930 * 90.00190 * 18 16 14 20 20 H 1.48497 * 109.47215 * 209.99871 * 18 16 14 21 21 H 1.48501 * 109.47435 * 330.00035 * 18 16 14 22 22 C 1.46504 * 120.00031 * 89.99880 * 13 12 10 23 23 C 1.52997 * 117.49958 * 193.33722 * 22 13 12 24 24 C 1.52999 * 117.49945 * 124.67786 * 22 13 12 25 25 H 1.09004 * 109.46922 * 59.99990 * 1 2 3 26 26 H 1.08999 * 109.47600 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.46993 * 300.00360 * 1 2 3 28 28 H 1.09004 * 109.46922 * 120.00010 * 2 1 3 29 29 H 1.09003 * 109.46975 * 55.74138 * 3 2 1 30 30 H 1.08997 * 109.47424 * 175.74183 * 3 2 1 31 31 H 1.09000 * 109.46958 * 295.74259 * 3 2 1 32 32 H 1.08998 * 109.46929 * 55.42422 * 4 2 1 33 33 H 1.08997 * 109.47127 * 175.42089 * 4 2 1 34 34 H 1.09002 * 109.47256 * 60.00275 * 7 5 4 35 35 H 1.09001 * 109.46733 * 179.97438 * 7 5 4 36 36 H 1.09000 * 109.47064 * 299.99937 * 7 5 4 37 37 H 1.09002 * 109.46647 * 90.00655 * 9 8 5 38 38 H 1.09001 * 109.46595 * 210.00091 * 9 8 5 39 39 H 1.08990 * 109.47226 * 330.00150 * 9 8 5 40 40 H 1.09002 * 109.47404 * 299.99524 * 12 10 8 41 41 H 1.09000 * 109.47452 * 60.00457 * 12 10 8 42 42 H 0.97002 * 119.99686 * 185.10415 * 17 16 14 43 43 H 1.09001 * 115.54809 * 339.01155 * 22 13 12 44 44 H 1.08999 * 117.50391 * 0.02562 * 23 22 13 45 45 H 1.09005 * 117.49823 * 145.02487 * 23 22 13 46 46 H 1.08998 * 117.50192 * 214.98020 * 24 22 13 47 47 H 1.09007 * 117.49679 * 359.97438 * 24 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.6261 -2.1932 -1.1930 6 1 0.5440 -2.2623 -1.0810 7 6 2.0507 -2.8921 -2.4862 8 7 2.2774 -2.8403 -0.0515 9 6 3.7368 -2.8090 0.0735 10 6 1.5343 -3.4646 0.8836 11 8 0.3262 -3.4910 0.7798 12 6 2.2044 -4.1307 2.0575 13 7 1.1873 -4.7323 2.9235 14 6 0.6384 -4.0026 3.9440 15 1 0.0274 -4.4907 4.6890 16 6 0.8671 -2.6356 4.0208 17 7 1.1820 -1.9591 2.9366 18 14 0.7277 -1.7562 5.6630 19 1 2.0482 -1.7640 6.3422 20 1 0.2950 -0.3536 5.4382 21 1 -0.2708 -2.4520 6.5139 22 6 0.7575 -6.1146 2.6979 23 6 -0.5091 -6.5865 3.4146 24 6 0.8624 -7.0879 3.8736 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.8933 -0.5139 0.8900 29 1 1.6157 1.9779 0.8494 30 1 3.1273 1.4434 0.0763 31 1 1.7404 1.9338 -0.9257 32 1 1.6113 -0.2570 -2.1373 33 1 3.1269 -0.6508 -1.2912 34 1 3.1328 -2.8230 -2.5981 35 1 1.7562 -3.9408 -2.4459 36 1 1.5660 -2.4105 -3.3354 37 1 4.0342 -1.9252 0.6381 38 1 4.0761 -3.7042 0.5947 39 1 4.1859 -2.7742 -0.9190 40 1 2.8806 -4.9063 1.6978 41 1 2.7694 -3.3892 2.6222 42 1 1.4141 -1.0195 3.0016 43 1 0.9476 -6.5089 1.6996 44 1 -1.0229 -5.8685 4.0538 45 1 -1.1522 -7.2917 2.8881 46 1 1.1210 -8.1227 3.6490 47 1 1.2516 -6.6999 4.8150 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000355663983.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:15 Heat of formation + Delta-G solvation = 12.312649 kcal Electronic energy + Delta-G solvation = -24724.891567 eV Core-core repulsion = 21523.591368 eV Total energy + Delta-G solvation = -3201.300199 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -39.03547 -37.13429 -35.99583 -34.05161 -33.32158 -31.16914 -30.25653 -26.72319 -26.54868 -26.14393 -25.92594 -23.78525 -21.42009 -21.02309 -19.93096 -19.29608 -18.11608 -16.35481 -16.10819 -15.63647 -14.95205 -14.83026 -14.30795 -14.01467 -13.82375 -13.55432 -13.08336 -12.84477 -12.41164 -12.30415 -12.14310 -11.94395 -11.78528 -11.72001 -11.61579 -11.42425 -11.16731 -11.11523 -10.79786 -10.76843 -10.65694 -10.40903 -10.25429 -10.06560 -9.94900 -9.91218 -9.78747 -9.69974 -9.34885 -8.45765 -8.15558 -7.56848 -6.78185 -5.77942 -3.07279 3.40204 3.48905 3.49279 3.99316 4.33331 4.54992 4.91853 5.12497 5.22665 5.41030 5.46805 5.48012 5.63696 5.69194 5.73474 5.84172 5.88709 5.91029 5.96337 6.03991 6.06864 6.13227 6.18037 6.19674 6.22079 6.28707 6.32422 6.36180 6.46883 6.47709 6.49491 6.56276 6.60290 6.79990 6.82295 6.94584 7.10799 7.11442 7.13171 7.19514 7.62485 7.82541 8.27137 8.63458 9.17590 9.75440 9.91640 10.27124 11.28382 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.014929 B = 0.007527 C = 0.005687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1875.094221 B = 3719.228435 C = 4922.608006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.098 4.098 3 C -0.142 4.142 4 C -0.116 4.116 5 C 0.137 3.863 6 H 0.097 0.903 7 C -0.159 4.159 8 N -0.625 5.625 9 C 0.092 3.908 10 C 0.536 3.464 11 O -0.525 6.525 12 C 0.168 3.832 13 N -0.540 5.540 14 C -0.247 4.247 15 H 0.079 0.921 16 C 0.004 3.996 17 N -0.882 5.882 18 Si 0.896 3.104 19 H -0.290 1.290 20 H -0.294 1.294 21 H -0.282 1.282 22 C 0.133 3.867 23 C -0.200 4.200 24 C -0.224 4.224 25 H 0.032 0.968 26 H 0.069 0.931 27 H 0.045 0.955 28 H 0.101 0.899 29 H 0.048 0.952 30 H 0.045 0.955 31 H 0.043 0.957 32 H 0.056 0.944 33 H 0.055 0.945 34 H 0.051 0.949 35 H 0.053 0.947 36 H 0.055 0.945 37 H 0.044 0.956 38 H 0.062 0.938 39 H 0.053 0.947 40 H 0.036 0.964 41 H 0.100 0.900 42 H 0.251 0.749 43 H 0.088 0.912 44 H 0.096 0.904 45 H 0.074 0.926 46 H 0.074 0.926 47 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.948 0.173 -8.258 10.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.116 4.116 3 C -0.199 4.199 4 C -0.154 4.154 5 C 0.033 3.967 6 H 0.115 0.885 7 C -0.217 4.217 8 N -0.363 5.363 9 C -0.052 4.052 10 C 0.324 3.676 11 O -0.398 6.398 12 C 0.038 3.962 13 N -0.255 5.255 14 C -0.375 4.375 15 H 0.097 0.903 16 C -0.194 4.194 17 N -0.527 5.527 18 Si 0.727 3.273 19 H -0.218 1.218 20 H -0.221 1.221 21 H -0.208 1.208 22 C 0.023 3.977 23 C -0.239 4.239 24 C -0.265 4.265 25 H 0.051 0.949 26 H 0.088 0.912 27 H 0.064 0.936 28 H 0.119 0.881 29 H 0.068 0.932 30 H 0.064 0.936 31 H 0.062 0.938 32 H 0.074 0.926 33 H 0.073 0.927 34 H 0.070 0.930 35 H 0.072 0.928 36 H 0.074 0.926 37 H 0.062 0.938 38 H 0.081 0.919 39 H 0.071 0.929 40 H 0.054 0.946 41 H 0.118 0.882 42 H 0.062 0.938 43 H 0.106 0.894 44 H 0.114 0.886 45 H 0.093 0.907 46 H 0.092 0.908 47 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 5.225 0.377 -8.295 9.811 hybrid contribution -0.057 0.818 0.820 1.160 sum 5.168 1.195 -7.475 9.166 Atomic orbital electron populations 1.21717 0.95436 1.02644 0.99385 1.21114 0.96117 0.94669 0.99747 1.21824 1.00114 0.97358 1.00637 1.21930 1.00130 0.95456 0.97923 1.20862 0.99785 0.90760 0.85317 0.88464 1.22149 1.00982 1.00893 0.97675 1.48040 1.05760 1.57783 1.24729 1.21451 0.82039 1.01326 1.00396 1.21796 0.87916 0.76731 0.81119 1.90496 1.14602 1.59766 1.74920 1.20700 0.90257 0.95267 0.90005 1.43485 1.42624 1.07071 1.32294 1.19213 1.28340 0.89593 1.00399 0.90344 1.24638 1.02282 0.95620 0.96833 1.69967 1.50318 1.07961 1.24464 0.86363 0.77574 0.78860 0.84549 1.21761 1.22087 1.20774 1.20868 0.98090 0.85897 0.92820 1.23110 0.91198 1.03598 1.06044 1.23425 1.01631 0.98792 1.02649 0.94914 0.91219 0.93623 0.88101 0.93241 0.93569 0.93833 0.92566 0.92672 0.93038 0.92790 0.92611 0.93778 0.91946 0.92877 0.94579 0.88218 0.93816 0.89442 0.88556 0.90741 0.90786 0.89363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.48 8.95 37.16 0.33 -2.15 16 2 C -0.10 -1.68 2.86 -90.62 -0.26 -1.94 16 3 C -0.14 -2.08 9.19 37.16 0.34 -1.73 16 4 C -0.12 -1.73 4.06 -26.73 -0.11 -1.84 16 5 C 0.14 2.29 2.48 -67.93 -0.17 2.12 16 6 H 0.10 1.95 5.14 -51.93 -0.27 1.68 16 7 C -0.16 -2.15 9.24 37.16 0.34 -1.81 16 8 N -0.62 -11.37 2.09 -173.93 -0.36 -11.73 16 9 C 0.09 1.35 9.08 59.85 0.54 1.89 16 10 C 0.54 12.08 5.66 -10.99 -0.06 12.01 16 11 O -0.52 -14.08 15.15 5.55 0.08 -13.99 16 12 C 0.17 3.75 4.03 -5.19 -0.02 3.73 16 13 N -0.54 -13.19 2.38 -167.02 -0.40 -13.59 16 14 C -0.25 -6.58 8.97 -15.06 -0.14 -6.71 16 15 H 0.08 2.11 6.19 -52.48 -0.32 1.79 16 16 C 0.00 0.11 4.89 -17.43 -0.09 0.03 16 17 N -0.88 -23.24 8.38 55.49 0.46 -22.77 16 18 Si 0.90 21.51 29.62 -169.99 -5.03 16.48 16 19 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 20 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 21 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 22 C 0.13 2.88 6.60 -67.93 -0.45 2.43 16 23 C -0.20 -4.08 9.77 -26.70 -0.26 -4.34 16 24 C -0.22 -4.25 10.17 -26.70 -0.27 -4.52 16 25 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.07 1.51 6.28 -51.93 -0.33 1.18 16 27 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 28 H 0.10 2.06 6.57 -51.93 -0.34 1.72 16 29 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 31 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 33 H 0.05 0.76 7.45 -51.93 -0.39 0.38 16 34 H 0.05 0.62 6.81 -51.93 -0.35 0.27 16 35 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 36 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 37 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.06 0.87 6.44 -51.93 -0.33 0.53 16 39 H 0.05 0.64 6.63 -51.93 -0.34 0.30 16 40 H 0.04 0.71 7.33 -51.93 -0.38 0.33 16 41 H 0.10 2.37 6.42 -51.93 -0.33 2.04 16 42 H 0.25 6.58 7.78 -40.82 -0.32 6.26 16 43 H 0.09 1.79 8.14 -51.93 -0.42 1.36 16 44 H 0.10 2.15 6.38 -51.93 -0.33 1.82 16 45 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 46 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 47 H 0.09 1.77 8.14 -51.92 -0.42 1.35 16 LS Contribution 360.13 15.07 5.43 5.43 Total: -1.00 -29.26 360.13 -8.41 -37.67 By element: Atomic # 1 Polarization: 13.65 SS G_CDS: -8.33 Total: 5.32 kcal Atomic # 6 Polarization: -2.56 SS G_CDS: -0.26 Total: -2.82 kcal Atomic # 7 Polarization: -47.79 SS G_CDS: -0.30 Total: -48.09 kcal Atomic # 8 Polarization: -14.08 SS G_CDS: 0.08 Total: -13.99 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.03 Total: 16.48 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -29.26 -8.41 -37.67 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355663983.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.982 kcal (2) G-P(sol) polarization free energy of solvation -29.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.669 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds