Wall clock time and date at job start Tue Mar 31 2020 05:22:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.46700 * 2 1 4 4 C 1.53001 * 109.47211 * 240.00488 * 2 1 3 5 5 C 1.53003 * 109.47450 * 72.41663 * 4 2 1 6 6 C 1.52998 * 109.47086 * 53.44391 * 5 4 2 7 7 C 1.52996 * 109.46950 * 173.44528 * 5 4 2 8 8 C 1.53000 * 109.46916 * 293.44423 * 5 4 2 9 9 C 1.50696 * 109.47431 * 119.99736 * 2 1 3 10 10 O 1.21282 * 119.99431 * 95.84345 * 9 2 1 11 11 N 1.34773 * 120.00207 * 275.84819 * 9 2 1 12 12 C 1.46957 * 120.59487 * 355.55599 * 11 9 2 13 13 C 1.53370 * 108.63645 * 125.04784 * 12 11 9 14 14 N 1.46964 * 108.63516 * 49.42235 * 13 12 11 15 15 C 1.36939 * 120.59007 * 124.75224 * 14 13 12 16 16 H 1.08007 * 119.99621 * 208.78280 * 15 14 13 17 17 C 1.38812 * 120.00202 * 28.78435 * 15 14 13 18 18 N 1.31610 * 119.99904 * 17.25102 * 17 15 14 19 19 Si 1.86801 * 119.99942 * 197.24829 * 17 15 14 20 20 H 1.48502 * 109.47271 * 359.97438 * 19 17 15 21 21 H 1.48498 * 109.47243 * 120.00204 * 19 17 15 22 22 H 1.48503 * 109.47106 * 240.00569 * 19 17 15 23 23 C 1.46957 * 118.81234 * 304.77635 * 14 13 12 24 24 C 1.46964 * 120.59222 * 175.83297 * 11 9 2 25 25 H 1.09000 * 109.46984 * 280.76066 * 1 2 3 26 26 H 1.08999 * 109.47444 * 40.76351 * 1 2 3 27 27 H 1.09000 * 109.46822 * 160.76160 * 1 2 3 28 28 H 1.09005 * 109.46948 * 192.41954 * 4 2 1 29 29 H 1.09003 * 109.46587 * 312.41496 * 4 2 1 30 30 H 1.08997 * 109.47042 * 60.00083 * 6 5 4 31 31 H 1.09002 * 109.47005 * 179.97438 * 6 5 4 32 32 H 1.08998 * 109.46843 * 300.00292 * 6 5 4 33 33 H 1.09007 * 109.47289 * 60.00246 * 7 5 4 34 34 H 1.09002 * 109.47108 * 179.97438 * 7 5 4 35 35 H 1.08997 * 109.47204 * 299.99933 * 7 5 4 36 36 H 1.09003 * 109.46988 * 88.76844 * 8 5 4 37 37 H 1.08998 * 109.47345 * 208.76594 * 8 5 4 38 38 H 1.09000 * 109.47591 * 328.76561 * 8 5 4 39 39 H 1.09001 * 109.61260 * 244.79212 * 12 11 9 40 40 H 1.09004 * 109.61091 * 5.30146 * 12 11 9 41 41 H 1.08999 * 109.61035 * 289.67780 * 13 12 11 42 42 H 1.09000 * 109.60912 * 169.17085 * 13 12 11 43 43 H 0.97009 * 120.00291 * 179.97438 * 18 17 15 44 44 H 1.09001 * 109.61260 * 295.48000 * 23 14 13 45 45 H 1.09004 * 109.61091 * 174.97066 * 23 14 13 46 46 H 1.09000 * 109.61345 * 354.69734 * 24 11 9 47 47 H 1.08999 * 109.60959 * 115.20652 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 1.7992 0.1567 -2.4791 6 6 2.4087 1.5404 -2.2452 7 6 2.4534 -0.4886 -3.7023 8 6 0.2947 0.2962 -2.7194 9 6 2.0324 -0.7103 1.2304 10 8 2.3353 -1.8832 1.1722 11 7 2.1449 -0.0423 2.3955 12 6 1.8746 1.4008 2.4594 13 6 0.8127 1.6533 3.5367 14 7 1.2138 0.9529 4.7648 15 6 1.3340 1.6329 5.9473 16 1 2.0313 1.2914 6.6982 17 6 0.5597 2.7610 6.1811 18 7 -0.5095 2.9887 5.4483 19 14 1.0354 3.9560 7.5358 20 1 2.2686 3.4755 8.2092 21 1 1.2820 5.2975 6.9485 22 1 -0.0667 4.0446 8.5272 23 6 1.4841 -0.4902 4.7010 24 6 2.5461 -0.7427 3.6236 25 1 -0.3633 0.1919 1.0096 26 1 -0.3634 0.7783 -0.6710 27 1 -0.3633 -0.9703 -0.3386 28 1 3.1074 -0.9166 -1.1457 29 1 1.5076 -1.6650 -1.3667 30 1 3.4806 1.4410 -2.0740 31 1 2.2376 2.1657 -3.1214 32 1 1.9427 2.0001 -1.3736 33 1 2.0191 -1.4744 -3.8690 34 1 2.2815 0.1366 -4.5785 35 1 3.5252 -0.5880 -3.5311 36 1 -0.0850 1.1510 -2.1596 37 1 0.1089 0.4469 -3.7828 38 1 -0.2120 -0.6098 -2.3869 39 1 2.7902 1.9336 2.7163 40 1 1.5058 1.7470 1.4938 41 1 -0.1508 1.2733 3.1969 42 1 0.7381 2.7229 3.7333 43 1 -1.0509 3.7769 5.6118 44 1 0.5685 -1.0229 4.4440 45 1 1.8530 -0.8364 5.6665 46 1 2.6207 -1.8123 3.4271 47 1 3.5095 -0.3627 3.9634 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000356815891.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:33 Heat of formation + Delta-G solvation = -22.732160 kcal Electronic energy + Delta-G solvation = -23959.563410 eV Core-core repulsion = 20756.743554 eV Total energy + Delta-G solvation = -3202.819856 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.10419 -38.09545 -36.66396 -33.88041 -32.88529 -31.16396 -30.11375 -28.01438 -27.43029 -26.99311 -26.32847 -24.07096 -23.15424 -22.16985 -20.25107 -18.78270 -18.24312 -17.27574 -16.23413 -15.60388 -15.14084 -14.85278 -14.53014 -14.41011 -14.09739 -13.88761 -13.60180 -13.36246 -13.23188 -12.98391 -12.87252 -12.61571 -12.15941 -12.07281 -11.83710 -11.70569 -11.55662 -11.34832 -11.05640 -10.88707 -10.83816 -10.74029 -10.61064 -10.53206 -10.47940 -10.34235 -10.21077 -9.98666 -9.83459 -9.11846 -8.61258 -8.20403 -6.71858 -5.87804 -3.32285 3.06168 3.31886 3.40377 3.42287 3.50489 4.42542 4.60050 4.67053 4.75347 4.94809 5.14550 5.21211 5.26687 5.32385 5.42182 5.50411 5.53951 5.57373 5.62807 5.70704 5.80105 5.83019 5.88212 5.90464 5.93144 5.96083 5.98437 6.01217 6.12866 6.18932 6.20346 6.25895 6.33372 6.35210 6.36733 6.44868 6.46910 6.78489 6.94592 7.21730 7.44075 7.71153 7.97987 8.34213 8.64123 9.10323 9.72758 10.30247 11.19934 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.026629 B = 0.004198 C = 0.003894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1051.227288 B = 6668.306701 C = 7189.545184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.114 4.114 3 H 0.097 0.903 4 C -0.087 4.087 5 C -0.070 4.070 6 C -0.147 4.147 7 C -0.139 4.139 8 C -0.149 4.149 9 C 0.514 3.486 10 O -0.562 6.562 11 N -0.597 5.597 12 C 0.078 3.922 13 C 0.159 3.841 14 N -0.591 5.591 15 C -0.255 4.255 16 H 0.068 0.932 17 C 0.004 3.996 18 N -0.902 5.902 19 Si 0.903 3.097 20 H -0.277 1.277 21 H -0.288 1.288 22 H -0.290 1.290 23 C 0.132 3.868 24 C 0.095 3.905 25 H 0.061 0.939 26 H 0.076 0.924 27 H 0.059 0.941 28 H 0.063 0.937 29 H 0.070 0.930 30 H 0.054 0.946 31 H 0.053 0.947 32 H 0.061 0.939 33 H 0.054 0.946 34 H 0.053 0.947 35 H 0.053 0.947 36 H 0.064 0.936 37 H 0.048 0.952 38 H 0.060 0.940 39 H 0.062 0.938 40 H 0.073 0.927 41 H 0.024 0.976 42 H 0.098 0.902 43 H 0.254 0.746 44 H 0.023 0.977 45 H 0.066 0.934 46 H 0.080 0.920 47 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.561 -2.658 -15.397 16.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.135 4.135 3 H 0.115 0.885 4 C -0.125 4.125 5 C -0.070 4.070 6 C -0.204 4.204 7 C -0.196 4.196 8 C -0.206 4.206 9 C 0.302 3.698 10 O -0.442 6.442 11 N -0.329 5.329 12 C -0.046 4.046 13 C 0.032 3.968 14 N -0.314 5.314 15 C -0.385 4.385 16 H 0.085 0.915 17 C -0.195 4.195 18 N -0.546 5.546 19 Si 0.733 3.267 20 H -0.202 1.202 21 H -0.215 1.215 22 H -0.217 1.217 23 C 0.005 3.995 24 C -0.029 4.029 25 H 0.080 0.920 26 H 0.094 0.906 27 H 0.078 0.922 28 H 0.082 0.918 29 H 0.088 0.912 30 H 0.073 0.927 31 H 0.072 0.928 32 H 0.080 0.920 33 H 0.073 0.927 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.083 0.917 37 H 0.067 0.933 38 H 0.079 0.921 39 H 0.080 0.920 40 H 0.092 0.908 41 H 0.042 0.958 42 H 0.116 0.884 43 H 0.064 0.936 44 H 0.040 0.960 45 H 0.084 0.916 46 H 0.098 0.902 47 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 3.603 -3.129 -15.363 16.087 hybrid contribution 0.149 0.776 0.804 1.127 sum 3.752 -2.353 -14.559 15.218 Atomic orbital electron populations 1.22147 0.92758 1.02751 1.03111 1.21435 0.97960 1.01045 0.93029 0.88492 1.21538 1.01453 0.97915 0.91559 1.20558 0.95790 0.95552 0.95109 1.22037 1.00787 0.95971 1.01629 1.21879 1.00427 1.00452 0.96882 1.22294 0.95003 1.02301 1.00988 1.20659 0.77524 0.87062 0.84563 1.90612 1.51508 1.16776 1.85308 1.48067 1.66629 1.10016 1.08160 1.22716 1.01280 0.79438 1.01148 1.21161 0.91834 0.99992 0.83792 1.43985 1.80188 1.01766 1.05461 1.19250 1.16450 1.08008 0.94750 0.91479 1.25069 0.95015 1.00907 0.98480 1.70023 1.14421 1.27999 1.42149 0.86216 0.77980 0.81106 0.81425 1.20197 1.21467 1.21672 1.21299 0.95029 0.87070 0.96107 1.22182 0.98696 0.97076 0.84949 0.92014 0.90569 0.92157 0.91832 0.91172 0.92725 0.92786 0.91972 0.92709 0.92818 0.92797 0.91708 0.93253 0.92127 0.91987 0.90832 0.95839 0.88353 0.93554 0.95953 0.91589 0.90150 0.92137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.93 7.69 37.16 0.29 -1.64 16 2 C -0.11 -1.55 1.64 -91.77 -0.15 -1.70 16 3 H 0.10 1.22 3.81 -51.93 -0.20 1.02 16 4 C -0.09 -1.07 3.26 -26.73 -0.09 -1.16 16 5 C -0.07 -0.68 0.80 -154.51 -0.12 -0.81 16 6 C -0.15 -1.38 7.82 37.16 0.29 -1.09 16 7 C -0.14 -1.23 8.31 37.16 0.31 -0.92 16 8 C -0.15 -1.35 7.38 37.16 0.27 -1.08 16 9 C 0.51 9.09 6.68 -10.99 -0.07 9.02 16 10 O -0.56 -11.51 15.66 5.56 0.09 -11.43 16 11 N -0.60 -10.98 2.95 -172.49 -0.51 -11.49 16 12 C 0.08 1.40 6.43 -3.60 -0.02 1.38 16 13 C 0.16 3.56 5.51 -3.60 -0.02 3.54 16 14 N -0.59 -14.38 2.96 -172.04 -0.51 -14.89 16 15 C -0.26 -6.77 9.57 -15.06 -0.14 -6.92 16 16 H 0.07 1.76 7.89 -52.48 -0.41 1.35 16 17 C 0.00 0.11 4.91 -17.43 -0.09 0.02 16 18 N -0.90 -25.13 11.23 55.49 0.62 -24.51 16 19 Si 0.90 20.97 29.59 -169.99 -5.03 15.94 16 20 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 21 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 22 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 23 C 0.13 2.80 6.67 -3.60 -0.02 2.77 16 24 C 0.10 1.80 6.58 -3.60 -0.02 1.78 16 25 H 0.06 0.92 7.99 -51.93 -0.41 0.51 16 26 H 0.08 0.81 5.06 -51.93 -0.26 0.55 16 27 H 0.06 0.76 7.18 -51.93 -0.37 0.39 16 28 H 0.06 0.85 8.06 -51.93 -0.42 0.43 16 29 H 0.07 0.92 7.68 -51.93 -0.40 0.52 16 30 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 31 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.06 0.60 6.03 -51.93 -0.31 0.28 16 33 H 0.05 0.48 8.14 -51.92 -0.42 0.05 16 34 H 0.05 0.42 8.11 -51.93 -0.42 0.00 16 35 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 36 H 0.06 0.58 5.68 -51.93 -0.30 0.28 16 37 H 0.05 0.40 7.83 -51.93 -0.41 0.00 16 38 H 0.06 0.57 6.51 -51.93 -0.34 0.23 16 39 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 40 H 0.07 1.11 5.35 -51.93 -0.28 0.83 16 41 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.10 2.43 6.03 -51.93 -0.31 2.12 16 43 H 0.25 6.84 8.31 -40.82 -0.34 6.50 16 44 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 45 H 0.07 1.34 7.93 -51.93 -0.41 0.92 16 46 H 0.08 1.50 7.02 -51.93 -0.36 1.14 16 47 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 LS Contribution 348.56 15.07 5.25 5.25 Total: -1.00 -29.83 348.56 -7.82 -37.65 By element: Atomic # 1 Polarization: 8.41 SS G_CDS: -8.14 Total: 0.27 kcal Atomic # 6 Polarization: 2.80 SS G_CDS: 0.40 Total: 3.20 kcal Atomic # 7 Polarization: -50.50 SS G_CDS: -0.40 Total: -50.89 kcal Atomic # 8 Polarization: -11.51 SS G_CDS: 0.09 Total: -11.43 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.03 Total: 15.94 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -29.83 -7.82 -37.65 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356815891.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.919 kcal (2) G-P(sol) polarization free energy of solvation -29.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.651 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds