Wall clock time and date at job start Tue Mar 31 2020 05:22:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.47301 * 2 1 4 4 C 1.52997 * 109.47056 * 120.00501 * 2 1 3 5 5 C 1.52999 * 109.47162 * 291.15936 * 4 2 1 6 6 C 1.52999 * 109.47209 * 67.30324 * 5 4 2 7 7 C 1.53002 * 109.46918 * 307.30884 * 5 4 2 8 8 C 1.52997 * 109.47656 * 187.30693 * 5 4 2 9 9 C 1.50706 * 109.46881 * 240.00072 * 2 1 3 10 10 O 1.21280 * 119.99867 * 253.13797 * 9 2 1 11 11 N 1.34774 * 119.99967 * 73.13979 * 9 2 1 12 12 C 1.46962 * 120.59441 * 4.55641 * 11 9 2 13 13 C 1.53810 * 108.39878 * 124.75463 * 12 11 9 14 14 N 1.46959 * 108.57914 * 49.64008 * 13 12 11 15 15 C 1.36939 * 120.59799 * 124.66753 * 14 13 12 16 16 H 1.07995 * 120.00302 * 212.30991 * 15 14 13 17 17 C 1.38814 * 119.99839 * 32.30466 * 15 14 13 18 18 N 1.31621 * 119.99882 * 10.51954 * 17 15 14 19 19 Si 1.86795 * 120.00031 * 190.51565 * 17 15 14 20 20 H 1.48506 * 109.47001 * 90.00127 * 19 17 15 21 21 H 1.48503 * 109.47407 * 209.99944 * 19 17 15 22 22 H 1.48505 * 109.47435 * 330.00236 * 19 17 15 23 23 C 1.46964 * 118.81286 * 304.64378 * 14 13 12 24 24 C 1.46964 * 120.59467 * 184.83011 * 11 9 2 25 25 H 1.08997 * 109.46787 * 331.66523 * 1 2 3 26 26 H 1.09004 * 109.47324 * 91.66307 * 1 2 3 27 27 H 1.09000 * 109.47046 * 211.66896 * 1 2 3 28 28 H 1.09002 * 109.47550 * 171.16359 * 4 2 1 29 29 H 1.08998 * 109.47516 * 51.15615 * 4 2 1 30 30 H 1.08999 * 109.47747 * 275.83722 * 6 5 4 31 31 H 1.09003 * 109.46663 * 35.83511 * 6 5 4 32 32 H 1.08996 * 109.47238 * 155.82979 * 6 5 4 33 33 H 1.09006 * 109.47110 * 180.02562 * 7 5 4 34 34 H 1.09004 * 109.47375 * 299.99604 * 7 5 4 35 35 H 1.08993 * 109.47543 * 59.99976 * 7 5 4 36 36 H 1.09004 * 109.46769 * 300.00370 * 8 5 4 37 37 H 1.09003 * 109.46993 * 59.99691 * 8 5 4 38 38 H 1.08993 * 109.47516 * 179.97438 * 8 5 4 39 39 H 1.08993 * 109.61114 * 244.54071 * 12 11 9 40 40 H 1.09006 * 109.60827 * 5.04998 * 12 11 9 41 41 H 1.09000 * 109.74709 * 289.84854 * 13 12 11 42 42 H 1.09006 * 109.53143 * 169.29952 * 13 12 11 43 43 H 0.96998 * 119.99531 * 179.97438 * 18 17 15 44 44 H 1.09006 * 109.61084 * 295.48622 * 23 14 13 45 45 H 1.08995 * 109.75563 * 175.05461 * 23 14 13 46 46 H 1.08997 * 109.61019 * 354.95443 * 24 11 9 47 47 H 1.09000 * 109.60594 * 115.45781 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.7191 0.1164 2.4886 6 6 0.2039 0.1588 2.6972 7 6 2.2470 1.5391 2.2932 8 6 2.3853 -0.5109 3.7147 9 6 2.0323 -0.7104 -1.2305 10 8 2.5216 -1.8160 -1.1351 11 7 1.9377 -0.1171 -2.4370 12 6 1.4395 1.2603 -2.5561 13 6 2.4929 2.0945 -3.3045 14 7 2.8804 1.3736 -4.5250 15 6 2.7843 1.9763 -5.7509 16 1 2.5540 1.3869 -6.6260 17 6 2.9829 3.3452 -5.8687 18 7 3.4635 4.0302 -4.8527 19 14 2.5682 4.2148 -7.4690 20 1 1.1563 4.6739 -7.4314 21 1 3.4649 5.3857 -7.6430 22 1 2.7534 3.2763 -8.6049 23 6 3.3734 -0.0058 -4.4065 24 6 2.3253 -0.8381 -3.6575 25 1 -0.3633 0.9045 0.4877 26 1 -0.3634 -0.0298 -1.0273 27 1 -0.3633 -0.8746 0.5395 28 1 3.1185 -0.8601 1.1738 29 1 1.5534 -1.6932 1.3317 30 1 -0.2259 0.9481 2.0804 31 1 -0.2289 -0.8005 2.4133 32 1 -0.0129 0.3589 3.7464 33 1 2.0187 2.1358 3.1764 34 1 3.3264 1.5089 2.1446 35 1 1.7723 1.9860 1.4197 36 1 2.0092 -1.5245 3.8539 37 1 3.4647 -0.5411 3.5661 38 1 2.1570 0.0861 4.5976 39 1 0.5028 1.2636 -3.1134 40 1 1.2782 1.6782 -1.5623 41 1 3.3680 2.2373 -2.6705 42 1 2.0690 3.0629 -3.5707 43 1 3.6026 4.9866 -4.9352 44 1 4.3112 -0.0127 -3.8509 45 1 3.5333 -0.4265 -5.3992 46 1 2.7491 -1.8065 -3.3914 47 1 1.4502 -0.9809 -4.2915 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000356815892.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:35 Heat of formation + Delta-G solvation = -24.147915 kcal Electronic energy + Delta-G solvation = -23927.878634 eV Core-core repulsion = 20724.997387 eV Total energy + Delta-G solvation = -3202.881247 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.11146 -38.08848 -36.62724 -33.91120 -32.88560 -31.11775 -30.07926 -28.03392 -27.37887 -26.99373 -26.28954 -24.09236 -23.05840 -22.24301 -20.14920 -18.79868 -18.32008 -17.24894 -16.09469 -15.66786 -15.28133 -14.77600 -14.42872 -14.39875 -14.18275 -13.78452 -13.62009 -13.40220 -13.26516 -12.95117 -12.87934 -12.57621 -12.14479 -12.06808 -11.86154 -11.60165 -11.57638 -11.27624 -11.09259 -10.88374 -10.85919 -10.72469 -10.57580 -10.52893 -10.49141 -10.31638 -10.18591 -10.04381 -9.83784 -9.14347 -8.59432 -8.19269 -6.65673 -5.86329 -3.36920 3.07337 3.32511 3.39532 3.40664 3.50769 4.42155 4.61204 4.67590 4.77894 4.93378 5.15501 5.22754 5.27631 5.32426 5.41693 5.51968 5.54191 5.56525 5.63719 5.72778 5.81880 5.83824 5.86937 5.90258 5.91669 5.94897 5.97995 6.03671 6.13969 6.19570 6.21108 6.25813 6.30823 6.37611 6.38910 6.44852 6.47521 6.81374 6.96694 7.24421 7.48506 7.70944 7.99177 8.38296 8.64872 9.12518 9.72752 10.32098 11.20936 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.026237 B = 0.004168 C = 0.003879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1066.920255 B = 6716.453291 C = 7217.324819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.114 4.114 3 H 0.100 0.900 4 C -0.086 4.086 5 C -0.070 4.070 6 C -0.150 4.150 7 C -0.147 4.147 8 C -0.139 4.139 9 C 0.513 3.487 10 O -0.562 6.562 11 N -0.597 5.597 12 C 0.080 3.920 13 C 0.159 3.841 14 N -0.591 5.591 15 C -0.256 4.256 16 H 0.066 0.934 17 C 0.006 3.994 18 N -0.905 5.905 19 Si 0.907 3.093 20 H -0.286 1.286 21 H -0.290 1.290 22 H -0.278 1.278 23 C 0.132 3.868 24 C 0.095 3.905 25 H 0.070 0.930 26 H 0.056 0.944 27 H 0.064 0.936 28 H 0.066 0.934 29 H 0.068 0.932 30 H 0.065 0.935 31 H 0.057 0.943 32 H 0.048 0.952 33 H 0.052 0.948 34 H 0.055 0.945 35 H 0.061 0.939 36 H 0.053 0.947 37 H 0.054 0.946 38 H 0.052 0.948 39 H 0.062 0.938 40 H 0.072 0.928 41 H 0.023 0.977 42 H 0.100 0.900 43 H 0.255 0.745 44 H 0.023 0.977 45 H 0.065 0.935 46 H 0.080 0.920 47 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.322 -5.327 13.759 16.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.135 4.135 3 H 0.118 0.882 4 C -0.124 4.124 5 C -0.070 4.070 6 C -0.207 4.207 7 C -0.204 4.204 8 C -0.197 4.197 9 C 0.301 3.699 10 O -0.442 6.442 11 N -0.329 5.329 12 C -0.045 4.045 13 C 0.032 3.968 14 N -0.314 5.314 15 C -0.386 4.386 16 H 0.084 0.916 17 C -0.193 4.193 18 N -0.549 5.549 19 Si 0.736 3.264 20 H -0.213 1.213 21 H -0.216 1.216 22 H -0.204 1.204 23 C 0.005 3.995 24 C -0.029 4.029 25 H 0.089 0.911 26 H 0.075 0.925 27 H 0.083 0.917 28 H 0.085 0.915 29 H 0.086 0.914 30 H 0.084 0.916 31 H 0.076 0.924 32 H 0.067 0.933 33 H 0.072 0.928 34 H 0.074 0.926 35 H 0.080 0.920 36 H 0.072 0.928 37 H 0.073 0.927 38 H 0.072 0.928 39 H 0.080 0.920 40 H 0.090 0.910 41 H 0.041 0.959 42 H 0.118 0.882 43 H 0.065 0.935 44 H 0.041 0.959 45 H 0.083 0.917 46 H 0.099 0.901 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -6.010 -5.713 13.769 16.073 hybrid contribution -0.131 0.663 -0.889 1.117 sum -6.141 -5.050 12.880 15.136 Atomic orbital electron populations 1.22150 0.93182 1.02656 1.02340 1.21413 0.97508 1.01366 0.93211 0.88212 1.21518 1.01615 0.97919 0.91338 1.20556 0.95679 0.95664 0.95109 1.22311 0.95019 1.02229 1.01139 1.22021 1.01295 0.95496 1.01610 1.21870 1.00503 1.00430 0.96856 1.20654 0.78483 0.86078 0.84653 1.90613 1.46249 1.21060 1.86230 1.48053 1.63509 1.15240 1.06070 1.22812 0.99424 0.81513 1.00720 1.21268 0.93507 0.95406 0.86603 1.43927 1.73951 1.10067 1.03460 1.19209 1.42043 0.91246 0.86069 0.91648 1.25202 0.98682 0.97904 0.97471 1.69950 1.46952 1.07338 1.30636 0.86230 0.77779 0.79201 0.83159 1.21328 1.21631 1.20358 1.21295 0.93521 0.86782 0.97891 1.22175 0.99271 0.96074 0.85400 0.91134 0.92512 0.91743 0.91519 0.91355 0.91608 0.92399 0.93339 0.92849 0.92558 0.92003 0.92778 0.92705 0.92845 0.92005 0.90968 0.95896 0.88226 0.93456 0.95938 0.91652 0.90137 0.92172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.66 7.34 37.16 0.27 -1.38 16 2 C -0.11 -1.54 1.55 -91.77 -0.14 -1.68 16 3 H 0.10 1.32 4.44 -51.93 -0.23 1.09 16 4 C -0.09 -1.08 3.16 -26.73 -0.08 -1.16 16 5 C -0.07 -0.70 0.80 -154.51 -0.12 -0.82 16 6 C -0.15 -1.33 7.33 37.16 0.27 -1.06 16 7 C -0.15 -1.48 7.81 37.16 0.29 -1.18 16 8 C -0.14 -1.28 8.35 37.16 0.31 -0.97 16 9 C 0.51 9.07 6.73 -10.98 -0.07 9.00 16 10 O -0.56 -11.53 15.45 5.56 0.09 -11.44 16 11 N -0.60 -10.97 2.92 -172.22 -0.50 -11.47 16 12 C 0.08 1.42 5.69 -3.37 -0.02 1.41 16 13 C 0.16 3.60 5.47 -3.37 -0.02 3.58 16 14 N -0.59 -14.50 2.96 -171.77 -0.51 -15.00 16 15 C -0.26 -6.82 9.57 -15.06 -0.14 -6.96 16 16 H 0.07 1.71 7.85 -52.49 -0.41 1.30 16 17 C 0.01 0.17 5.05 -17.43 -0.09 0.08 16 18 N -0.90 -25.31 11.08 55.49 0.61 -24.69 16 19 Si 0.91 21.04 29.57 -169.99 -5.03 16.02 16 20 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 21 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 22 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 23 C 0.13 2.83 6.67 -3.60 -0.02 2.80 16 24 C 0.09 1.80 6.60 -3.60 -0.02 1.77 16 25 H 0.07 0.67 5.91 -51.93 -0.31 0.36 16 26 H 0.06 0.70 7.11 -51.93 -0.37 0.34 16 27 H 0.06 0.69 6.09 -51.93 -0.32 0.37 16 28 H 0.07 0.94 8.02 -51.93 -0.42 0.53 16 29 H 0.07 0.89 7.71 -51.93 -0.40 0.49 16 30 H 0.07 0.56 5.34 -51.93 -0.28 0.28 16 31 H 0.06 0.51 6.43 -51.93 -0.33 0.18 16 32 H 0.05 0.39 7.90 -51.93 -0.41 -0.02 16 33 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 34 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.06 0.63 6.11 -51.93 -0.32 0.31 16 36 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 38 H 0.05 0.44 8.12 -51.93 -0.42 0.02 16 39 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 40 H 0.07 1.09 5.30 -51.93 -0.28 0.82 16 41 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.10 2.48 6.08 -51.93 -0.32 2.17 16 43 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 44 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 45 H 0.07 1.33 7.94 -51.93 -0.41 0.92 16 46 H 0.08 1.51 6.99 -51.93 -0.36 1.14 16 47 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 LS Contribution 346.18 15.07 5.22 5.22 Total: -1.00 -29.89 346.18 -7.81 -37.70 By element: Atomic # 1 Polarization: 8.34 SS G_CDS: -8.09 Total: 0.25 kcal Atomic # 6 Polarization: 3.02 SS G_CDS: 0.40 Total: 3.43 kcal Atomic # 7 Polarization: -50.77 SS G_CDS: -0.39 Total: -51.17 kcal Atomic # 8 Polarization: -11.53 SS G_CDS: 0.09 Total: -11.44 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.03 Total: 16.02 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -29.89 -7.81 -37.70 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356815892.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.555 kcal (2) G-P(sol) polarization free energy of solvation -29.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.703 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds