Wall clock time and date at job start Tue Mar 31 2020 05:22:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.47301 * 2 1 4 4 C 1.52997 * 109.47056 * 120.00501 * 2 1 3 5 5 C 1.52999 * 109.47162 * 291.15936 * 4 2 1 6 6 C 1.52999 * 109.47209 * 67.30324 * 5 4 2 7 7 C 1.53002 * 109.46918 * 307.30884 * 5 4 2 8 8 C 1.52997 * 109.47656 * 187.30693 * 5 4 2 9 9 C 1.50706 * 109.46881 * 240.00072 * 2 1 3 10 10 O 1.21280 * 119.99867 * 253.13797 * 9 2 1 11 11 N 1.34774 * 119.99967 * 73.13979 * 9 2 1 12 12 C 1.46962 * 120.59441 * 4.55641 * 11 9 2 13 13 C 1.53810 * 108.39878 * 124.75463 * 12 11 9 14 14 N 1.46959 * 108.57914 * 49.64008 * 13 12 11 15 15 C 1.36939 * 120.59799 * 124.66753 * 14 13 12 16 16 H 1.07995 * 120.00302 * 212.30991 * 15 14 13 17 17 C 1.38814 * 119.99839 * 32.30466 * 15 14 13 18 18 N 1.31621 * 119.99882 * 10.51954 * 17 15 14 19 19 Si 1.86795 * 120.00031 * 190.51565 * 17 15 14 20 20 H 1.48506 * 109.47001 * 90.00127 * 19 17 15 21 21 H 1.48503 * 109.47407 * 209.99944 * 19 17 15 22 22 H 1.48505 * 109.47435 * 330.00236 * 19 17 15 23 23 C 1.46964 * 118.81286 * 304.64378 * 14 13 12 24 24 C 1.46964 * 120.59467 * 184.83011 * 11 9 2 25 25 H 1.08997 * 109.46787 * 331.66523 * 1 2 3 26 26 H 1.09004 * 109.47324 * 91.66307 * 1 2 3 27 27 H 1.09000 * 109.47046 * 211.66896 * 1 2 3 28 28 H 1.09002 * 109.47550 * 171.16359 * 4 2 1 29 29 H 1.08998 * 109.47516 * 51.15615 * 4 2 1 30 30 H 1.08999 * 109.47747 * 275.83722 * 6 5 4 31 31 H 1.09003 * 109.46663 * 35.83511 * 6 5 4 32 32 H 1.08996 * 109.47238 * 155.82979 * 6 5 4 33 33 H 1.09006 * 109.47110 * 180.02562 * 7 5 4 34 34 H 1.09004 * 109.47375 * 299.99604 * 7 5 4 35 35 H 1.08993 * 109.47543 * 59.99976 * 7 5 4 36 36 H 1.09004 * 109.46769 * 300.00370 * 8 5 4 37 37 H 1.09003 * 109.46993 * 59.99691 * 8 5 4 38 38 H 1.08993 * 109.47516 * 179.97438 * 8 5 4 39 39 H 1.08993 * 109.61114 * 244.54071 * 12 11 9 40 40 H 1.09006 * 109.60827 * 5.04998 * 12 11 9 41 41 H 1.09000 * 109.74709 * 289.84854 * 13 12 11 42 42 H 1.09006 * 109.53143 * 169.29952 * 13 12 11 43 43 H 0.96998 * 119.99531 * 179.97438 * 18 17 15 44 44 H 1.09006 * 109.61084 * 295.48622 * 23 14 13 45 45 H 1.08995 * 109.75563 * 175.05461 * 23 14 13 46 46 H 1.08997 * 109.61019 * 354.95443 * 24 11 9 47 47 H 1.09000 * 109.60594 * 115.45781 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.7191 0.1164 2.4886 6 6 0.2039 0.1588 2.6972 7 6 2.2470 1.5391 2.2932 8 6 2.3853 -0.5109 3.7147 9 6 2.0323 -0.7104 -1.2305 10 8 2.5216 -1.8160 -1.1351 11 7 1.9377 -0.1171 -2.4370 12 6 1.4395 1.2603 -2.5561 13 6 2.4929 2.0945 -3.3045 14 7 2.8804 1.3736 -4.5250 15 6 2.7843 1.9763 -5.7509 16 1 2.5540 1.3869 -6.6260 17 6 2.9829 3.3452 -5.8687 18 7 3.4635 4.0302 -4.8527 19 14 2.5682 4.2148 -7.4690 20 1 1.1563 4.6739 -7.4314 21 1 3.4649 5.3857 -7.6430 22 1 2.7534 3.2763 -8.6049 23 6 3.3734 -0.0058 -4.4065 24 6 2.3253 -0.8381 -3.6575 25 1 -0.3633 0.9045 0.4877 26 1 -0.3634 -0.0298 -1.0273 27 1 -0.3633 -0.8746 0.5395 28 1 3.1185 -0.8601 1.1738 29 1 1.5534 -1.6932 1.3317 30 1 -0.2259 0.9481 2.0804 31 1 -0.2289 -0.8005 2.4133 32 1 -0.0129 0.3589 3.7464 33 1 2.0187 2.1358 3.1764 34 1 3.3264 1.5089 2.1446 35 1 1.7723 1.9860 1.4197 36 1 2.0092 -1.5245 3.8539 37 1 3.4647 -0.5411 3.5661 38 1 2.1570 0.0861 4.5976 39 1 0.5028 1.2636 -3.1134 40 1 1.2782 1.6782 -1.5623 41 1 3.3680 2.2373 -2.6705 42 1 2.0690 3.0629 -3.5707 43 1 3.6026 4.9866 -4.9352 44 1 4.3112 -0.0127 -3.8509 45 1 3.5333 -0.4265 -5.3992 46 1 2.7491 -1.8065 -3.3914 47 1 1.4502 -0.9809 -4.2915 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000356815892.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:35 Heat of formation + Delta-G solvation = -40.442240 kcal Electronic energy + Delta-G solvation = -23928.585209 eV Core-core repulsion = 20724.997387 eV Total energy + Delta-G solvation = -3203.587822 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.45081 -39.21646 -38.20939 -35.63661 -34.10888 -32.86991 -31.75132 -28.88447 -28.68960 -28.15262 -27.17699 -25.77196 -24.65388 -23.71578 -21.71373 -20.08560 -19.45199 -18.78417 -17.74326 -17.16040 -16.62582 -16.49403 -15.61580 -15.52242 -15.43878 -15.28842 -15.03714 -14.93117 -14.63956 -14.19063 -14.03969 -13.65564 -13.36070 -13.19942 -13.11290 -12.79620 -12.73826 -12.68716 -12.51732 -12.39278 -12.23898 -12.02993 -11.99945 -11.94160 -11.75063 -11.65523 -11.42307 -11.36759 -11.17665 -10.64350 -10.49552 -9.79990 -8.60975 -7.88434 -5.43496 1.49126 1.50101 1.58953 1.66409 2.07466 2.50521 3.27280 3.49654 3.59110 3.71808 3.92661 4.02447 4.17564 4.22392 4.23325 4.33543 4.40346 4.44087 4.56149 4.66132 4.71189 4.73550 4.75411 4.80606 4.80924 4.87979 4.96751 4.99515 5.01097 5.05621 5.12133 5.18311 5.22764 5.23592 5.30495 5.40447 5.45086 5.55192 5.59042 5.61266 5.64568 5.67059 6.37844 6.53156 7.11740 7.20698 7.76761 8.32592 9.16097 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.026237 B = 0.004168 C = 0.003879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1066.920255 B = 6716.453291 C = 7217.324819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.107 4.107 3 H 0.105 0.895 4 C -0.081 4.081 5 C -0.065 4.065 6 C -0.149 4.149 7 C -0.149 4.149 8 C -0.139 4.139 9 C 0.508 3.492 10 O -0.592 6.592 11 N -0.603 5.603 12 C 0.098 3.902 13 C 0.164 3.836 14 N -0.608 5.608 15 C -0.269 4.269 16 H 0.067 0.933 17 C -0.041 4.041 18 N -0.934 5.934 19 Si 0.971 3.029 20 H -0.280 1.280 21 H -0.296 1.296 22 H -0.271 1.271 23 C 0.133 3.867 24 C 0.104 3.896 25 H 0.096 0.904 26 H 0.048 0.952 27 H 0.072 0.928 28 H 0.043 0.957 29 H 0.062 0.938 30 H 0.072 0.928 31 H 0.058 0.942 32 H 0.060 0.940 33 H 0.067 0.933 34 H 0.043 0.957 35 H 0.061 0.939 36 H 0.055 0.945 37 H 0.046 0.954 38 H 0.067 0.933 39 H 0.070 0.930 40 H 0.105 0.895 41 H -0.003 1.003 42 H 0.076 0.924 43 H 0.253 0.747 44 H 0.004 0.996 45 H 0.071 0.929 46 H 0.082 0.918 47 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.175 -5.151 14.621 17.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.128 4.128 3 H 0.123 0.877 4 C -0.119 4.119 5 C -0.065 4.065 6 C -0.205 4.205 7 C -0.206 4.206 8 C -0.197 4.197 9 C 0.299 3.701 10 O -0.474 6.474 11 N -0.334 5.334 12 C -0.026 4.026 13 C 0.038 3.962 14 N -0.332 5.332 15 C -0.399 4.399 16 H 0.085 0.915 17 C -0.237 4.237 18 N -0.579 5.579 19 Si 0.799 3.201 20 H -0.207 1.207 21 H -0.222 1.222 22 H -0.196 1.196 23 C 0.006 3.994 24 C -0.020 4.020 25 H 0.114 0.886 26 H 0.067 0.933 27 H 0.091 0.909 28 H 0.061 0.939 29 H 0.080 0.920 30 H 0.091 0.909 31 H 0.077 0.923 32 H 0.079 0.921 33 H 0.086 0.914 34 H 0.062 0.938 35 H 0.080 0.920 36 H 0.074 0.926 37 H 0.065 0.935 38 H 0.086 0.914 39 H 0.088 0.912 40 H 0.123 0.877 41 H 0.015 0.985 42 H 0.095 0.905 43 H 0.062 0.938 44 H 0.022 0.978 45 H 0.090 0.910 46 H 0.100 0.900 47 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -7.876 -5.556 14.641 17.529 hybrid contribution 0.531 0.554 -1.145 1.379 sum -7.345 -5.002 13.496 16.159 Atomic orbital electron populations 1.22181 0.90952 1.04446 1.02332 1.21471 0.99190 1.00912 0.91244 0.87690 1.21483 0.99975 0.98179 0.92291 1.20525 0.96956 0.95097 0.93971 1.22292 0.93564 1.02523 1.02151 1.22039 1.00544 0.95678 1.02301 1.21873 0.99948 1.00803 0.97033 1.21446 0.77488 0.85846 0.85337 1.90596 1.47510 1.22646 1.86660 1.48147 1.63663 1.15332 1.06281 1.22591 0.97615 0.80549 1.01871 1.21107 0.93634 0.95356 0.86122 1.44189 1.74515 1.11033 1.03461 1.19511 1.41685 0.91696 0.86997 0.91534 1.25919 0.98860 0.98524 1.00425 1.70107 1.48120 1.07260 1.32394 0.85219 0.77425 0.77736 0.79708 1.20659 1.22208 1.19627 1.21337 0.93566 0.85980 0.98467 1.21984 0.98779 0.95542 0.85712 0.88554 0.93312 0.90923 0.93858 0.91958 0.90938 0.92347 0.92134 0.91366 0.93757 0.92043 0.92594 0.93528 0.91405 0.91182 0.87743 0.98523 0.90534 0.93820 0.97752 0.91024 0.89964 0.91121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.81 7.34 71.98 0.53 -2.28 16 2 C -0.11 -2.72 1.55 -11.54 -0.02 -2.74 16 3 H 0.11 2.57 4.44 -2.39 -0.01 2.56 16 4 C -0.08 -1.96 3.16 30.59 0.10 -1.86 16 5 C -0.07 -1.18 0.80 -52.18 -0.04 -1.22 16 6 C -0.15 -2.15 7.33 71.98 0.53 -1.62 16 7 C -0.15 -2.68 7.81 71.98 0.56 -2.12 16 8 C -0.14 -2.32 8.35 71.98 0.60 -1.72 16 9 C 0.51 17.59 6.73 87.66 0.59 18.18 16 10 O -0.59 -24.25 15.45 -3.03 -0.05 -24.30 16 11 N -0.60 -21.65 2.92 -817.17 -2.38 -24.03 16 12 C 0.10 3.37 5.69 86.56 0.49 3.87 16 13 C 0.16 7.53 5.47 86.56 0.47 8.00 16 14 N -0.61 -30.12 2.96 -697.36 -2.06 -32.18 16 15 C -0.27 -14.37 9.57 84.03 0.80 -13.56 16 16 H 0.07 3.47 7.85 -2.91 -0.02 3.45 16 17 C -0.04 -2.22 5.05 84.86 0.43 -1.79 16 18 N -0.93 -53.01 11.08 21.65 0.24 -52.77 16 19 Si 0.97 43.23 29.57 68.60 2.03 45.26 16 20 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 21 H -0.30 -13.32 7.11 99.48 0.71 -12.62 16 22 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 23 C 0.13 5.75 6.67 86.41 0.58 6.33 16 24 C 0.10 3.90 6.60 86.41 0.57 4.47 16 25 H 0.10 1.44 5.91 -2.39 -0.01 1.42 16 26 H 0.05 1.07 7.11 -2.39 -0.02 1.05 16 27 H 0.07 1.34 6.09 -2.39 -0.01 1.33 16 28 H 0.04 1.23 8.02 -2.39 -0.02 1.21 16 29 H 0.06 1.57 7.71 -2.39 -0.02 1.55 16 30 H 0.07 0.95 5.34 -2.39 -0.01 0.94 16 31 H 0.06 0.85 6.43 -2.39 -0.02 0.84 16 32 H 0.06 0.76 7.90 -2.39 -0.02 0.74 16 33 H 0.07 1.03 8.14 -2.38 -0.02 1.01 16 34 H 0.04 0.89 8.14 -2.39 -0.02 0.88 16 35 H 0.06 1.10 6.11 -2.39 -0.01 1.09 16 36 H 0.05 0.90 8.14 -2.38 -0.02 0.88 16 37 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 38 H 0.07 0.94 8.12 -2.39 -0.02 0.92 16 39 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 40 H 0.10 2.93 5.30 -2.38 -0.01 2.91 16 41 H 0.00 -0.17 8.14 -2.39 -0.02 -0.19 16 42 H 0.08 3.88 6.08 -2.38 -0.01 3.86 16 43 H 0.25 13.87 8.31 -92.71 -0.77 13.10 16 44 H 0.00 0.21 8.14 -2.38 -0.02 0.19 16 45 H 0.07 2.94 7.94 -2.39 -0.02 2.92 16 46 H 0.08 3.06 6.99 -2.39 -0.02 3.04 16 47 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 Total: -1.00 -64.64 346.18 4.90 -59.74 By element: Atomic # 1 Polarization: 15.43 SS G_CDS: 0.93 Total: 16.36 kcal Atomic # 6 Polarization: 5.74 SS G_CDS: 6.19 Total: 11.93 kcal Atomic # 7 Polarization: -104.78 SS G_CDS: -4.20 Total: -108.99 kcal Atomic # 8 Polarization: -24.25 SS G_CDS: -0.05 Total: -24.30 kcal Atomic # 14 Polarization: 43.23 SS G_CDS: 2.03 Total: 45.26 kcal Total: -64.64 4.90 -59.74 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356815892.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.295 kcal (2) G-P(sol) polarization free energy of solvation -64.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.737 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds