Wall clock time and date at job start Tue Mar 31 2020 06:01:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46895 * 109.47455 * 2 1 4 4 C 1.46907 * 111.00025 * 296.70221 * 3 2 1 5 5 C 1.52998 * 109.46937 * 288.20094 * 4 3 2 6 6 C 1.46908 * 110.99907 * 60.65217 * 3 2 1 7 7 C 1.53001 * 109.46751 * 66.04753 * 6 3 2 8 8 H 1.09001 * 109.47309 * 305.00043 * 7 6 3 9 9 C 1.53004 * 109.47108 * 65.00174 * 7 6 3 10 10 C 1.53002 * 109.46894 * 179.97438 * 9 7 6 11 11 C 1.52997 * 109.47303 * 300.00044 * 10 9 7 12 12 C 1.52997 * 109.46944 * 59.99990 * 11 10 9 13 13 C 1.52997 * 109.46777 * 185.00028 * 7 6 3 14 14 H 1.08997 * 109.47219 * 60.00342 * 13 7 6 15 15 N 1.46506 * 109.47424 * 299.99996 * 13 7 6 16 16 C 1.34773 * 119.99859 * 154.99849 * 15 13 7 17 17 O 1.21685 * 120.00609 * 0.02562 * 16 15 13 18 18 C 1.46375 * 119.99494 * 180.02562 * 16 15 13 19 19 H 1.08007 * 120.00435 * 0.02562 * 18 16 15 20 20 C 1.40053 * 120.00007 * 180.02562 * 18 16 15 21 21 N 1.30668 * 119.99881 * 0.02562 * 20 18 16 22 22 Si 1.86803 * 120.00089 * 180.02562 * 20 18 16 23 23 H 1.48492 * 109.47044 * 59.99674 * 22 20 18 24 24 H 1.48499 * 109.46857 * 180.02562 * 22 20 18 25 25 H 1.48501 * 109.46615 * 299.99800 * 22 20 18 26 26 H 1.08996 * 109.47026 * 301.08902 * 1 2 3 27 27 H 1.08999 * 109.46880 * 61.08779 * 1 2 3 28 28 H 1.08999 * 109.47315 * 181.08962 * 1 2 3 29 29 H 1.09006 * 109.47130 * 240.00079 * 2 1 3 30 30 H 1.08998 * 109.47226 * 120.00085 * 2 1 3 31 31 H 1.08998 * 109.46988 * 48.19909 * 4 3 2 32 32 H 1.09003 * 109.47151 * 168.20155 * 4 3 2 33 33 H 1.09003 * 109.47405 * 299.80596 * 5 4 3 34 34 H 1.09003 * 109.47118 * 59.80467 * 5 4 3 35 35 H 1.09000 * 109.47060 * 179.80002 * 5 4 3 36 36 H 1.08997 * 109.46791 * 306.05003 * 6 3 2 37 37 H 1.08994 * 109.47148 * 186.04613 * 6 3 2 38 38 H 1.09001 * 109.47143 * 59.99767 * 9 7 6 39 39 H 1.09003 * 109.46766 * 299.99796 * 9 7 6 40 40 H 1.09001 * 109.46997 * 60.00191 * 10 9 7 41 41 H 1.09003 * 109.46423 * 179.97438 * 10 9 7 42 42 H 1.09004 * 109.46785 * 179.97438 * 11 10 9 43 43 H 1.09001 * 109.47214 * 300.00013 * 11 10 9 44 44 H 1.09001 * 109.47146 * 59.99982 * 12 11 10 45 45 H 1.09001 * 109.46959 * 180.02562 * 12 11 10 46 46 H 0.96997 * 119.99600 * 335.00191 * 15 13 7 47 47 H 0.97003 * 120.00270 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.6142 2.0867 -1.2252 5 6 2.4190 1.5498 -2.4105 6 6 1.5615 2.1053 1.1955 7 6 2.2066 1.4911 2.4395 8 1 1.9950 0.4222 2.4684 9 6 3.7201 1.7102 2.3901 10 6 4.3650 1.0966 3.6345 11 6 3.7937 1.7641 4.8870 12 6 2.2802 1.5450 4.9363 13 6 1.6353 2.1582 3.6923 14 1 0.5571 2.0021 3.7274 15 7 1.9197 3.5949 3.6535 16 6 1.1328 4.4560 4.3284 17 8 0.1863 4.0404 4.9703 18 6 1.4167 5.8915 4.2891 19 1 2.2565 6.2605 3.7190 20 6 0.5993 6.7864 4.9908 21 7 -0.4164 6.3400 5.6810 22 14 0.9612 8.6184 4.9402 23 1 0.8950 9.0973 3.5361 24 1 -0.0427 9.3440 5.7592 25 1 2.3194 8.8698 5.4855 26 1 -0.3633 0.5306 0.8800 27 1 -0.3633 0.4968 -0.8996 28 1 -0.3634 -1.0275 0.0195 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 0.5515 1.9223 -1.4033 32 1 1.8028 3.1543 -1.1118 33 1 3.4815 1.7173 -2.2341 34 1 2.2331 0.4816 -2.5218 35 1 2.1156 2.0681 -3.3202 36 1 0.4771 2.0281 1.2728 37 1 1.8465 3.1546 1.1189 38 1 3.9317 2.7791 2.3612 39 1 4.1270 1.2350 1.4976 40 1 4.1534 0.0277 3.6638 41 1 5.4433 1.2523 3.5990 42 1 4.2529 1.3265 5.7735 43 1 4.0053 2.8330 4.8577 44 1 2.0686 0.4761 4.9655 45 1 1.8731 2.0209 5.8284 46 1 2.6744 3.9262 3.1420 47 1 -0.9828 6.9598 6.1667 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000356940736.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:15 Heat of formation + Delta-G solvation = -58.498118 kcal Electronic energy + Delta-G solvation = -23957.139839 eV Core-core repulsion = 20752.769055 eV Total energy + Delta-G solvation = -3204.370784 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.59340 -37.78943 -36.16289 -32.69364 -32.20946 -31.72790 -31.06413 -29.26718 -28.47567 -26.01888 -24.87739 -23.72892 -22.10747 -21.08400 -20.40069 -19.42185 -18.02603 -17.33293 -15.96852 -15.92485 -15.35048 -14.87565 -14.66818 -14.11075 -14.02232 -13.93815 -13.57307 -13.15042 -12.99447 -12.57377 -12.35868 -12.24389 -12.12373 -11.97785 -11.66593 -11.54119 -11.41023 -11.29720 -11.18801 -11.10414 -11.02352 -10.88990 -10.61579 -10.40218 -10.29342 -10.27333 -9.94726 -9.73443 -9.46765 -8.80323 -8.13897 -7.53723 -7.36901 -6.13478 -4.58701 3.17639 3.22637 3.24340 3.99838 4.14162 4.64364 4.85993 4.91381 5.04827 5.17087 5.20143 5.22464 5.26256 5.29244 5.42205 5.51892 5.53974 5.57469 5.70624 5.71892 5.80231 5.83265 5.93852 5.95962 5.98140 6.01187 6.08098 6.09777 6.11622 6.20296 6.26667 6.29630 6.37921 6.53326 6.60805 6.67729 6.79752 6.87313 6.96064 7.21286 7.22250 7.47353 8.01553 8.21872 8.40503 9.07576 9.63700 10.66017 10.86598 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.015815 B = 0.005037 C = 0.004417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1770.010434 B = 5557.105273 C = 6337.319226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.046 3.954 3 N -0.533 5.533 4 C 0.043 3.957 5 C -0.144 4.144 6 C 0.058 3.942 7 C -0.085 4.085 8 H 0.070 0.930 9 C -0.102 4.102 10 C -0.116 4.116 11 C -0.115 4.115 12 C -0.126 4.126 13 C 0.162 3.838 14 H 0.070 0.930 15 N -0.756 5.756 16 C 0.557 3.443 17 O -0.582 6.582 18 C -0.547 4.547 19 H 0.064 0.936 20 C 0.089 3.911 21 N -0.769 5.769 22 Si 0.904 3.096 23 H -0.269 1.269 24 H -0.281 1.281 25 H -0.269 1.269 26 H 0.063 0.937 27 H 0.055 0.945 28 H 0.057 0.943 29 H 0.070 0.930 30 H 0.076 0.924 31 H 0.037 0.963 32 H 0.072 0.928 33 H 0.061 0.939 34 H 0.051 0.949 35 H 0.053 0.947 36 H 0.039 0.961 37 H 0.079 0.921 38 H 0.059 0.941 39 H 0.068 0.932 40 H 0.053 0.947 41 H 0.053 0.947 42 H 0.049 0.951 43 H 0.067 0.933 44 H 0.051 0.949 45 H 0.067 0.933 46 H 0.378 0.622 47 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.765 -10.747 -11.358 17.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.255 4.255 2 C -0.082 4.082 3 N -0.256 5.256 4 C -0.085 4.085 5 C -0.202 4.202 6 C -0.069 4.069 7 C -0.104 4.104 8 H 0.089 0.911 9 C -0.140 4.140 10 C -0.154 4.154 11 C -0.153 4.153 12 C -0.165 4.165 13 C 0.055 3.945 14 H 0.088 0.912 15 N -0.412 5.412 16 C 0.361 3.639 17 O -0.465 6.465 18 C -0.584 4.584 19 H 0.083 0.917 20 C -0.130 4.130 21 N -0.398 5.398 22 Si 0.729 3.271 23 H -0.194 1.194 24 H -0.206 1.206 25 H -0.193 1.193 26 H 0.081 0.919 27 H 0.074 0.926 28 H 0.076 0.924 29 H 0.089 0.911 30 H 0.095 0.905 31 H 0.055 0.945 32 H 0.091 0.909 33 H 0.080 0.920 34 H 0.070 0.930 35 H 0.072 0.928 36 H 0.057 0.943 37 H 0.097 0.903 38 H 0.078 0.922 39 H 0.087 0.913 40 H 0.072 0.928 41 H 0.072 0.928 42 H 0.068 0.932 43 H 0.086 0.914 44 H 0.070 0.930 45 H 0.086 0.914 46 H 0.211 0.789 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 6.407 -11.015 -10.754 16.674 hybrid contribution -0.428 1.109 -0.225 1.210 sum 5.979 -9.907 -10.979 15.951 Atomic orbital electron populations 1.22437 0.98565 1.02089 1.02360 1.22183 0.92725 0.90907 1.02381 1.62284 1.59273 1.02050 1.02027 1.22123 0.97502 0.98668 0.90180 1.21749 1.00990 1.00689 0.96741 1.22201 0.97648 0.98307 0.88751 1.21395 0.95833 0.99498 0.93681 0.91145 1.21432 0.94363 1.00873 0.97341 1.21540 0.98987 0.99410 0.95460 1.21461 0.95905 1.01327 0.96606 1.21874 0.95309 0.99246 1.00038 1.20422 0.98826 0.83339 0.91892 0.91200 1.46186 1.34188 1.04310 1.56469 1.18148 0.81235 0.86306 0.78229 1.90589 1.31374 1.79256 1.45278 1.20861 1.14501 0.90240 1.32807 0.91728 1.25672 0.93858 1.00013 0.93470 1.70010 1.12156 1.35368 1.22271 0.86500 0.78762 0.83056 0.78796 1.19381 1.20645 1.19345 0.91851 0.92637 0.92399 0.91123 0.90527 0.94517 0.90932 0.92029 0.93023 0.92782 0.94286 0.90254 0.92230 0.91335 0.92810 0.92796 0.93242 0.91413 0.93044 0.91399 0.78922 0.92207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.13 9.28 37.16 0.34 -1.79 16 2 C 0.05 0.50 5.70 -3.83 -0.02 0.48 16 3 N -0.53 -6.48 4.12 -234.62 -0.97 -7.45 16 4 C 0.04 0.49 5.56 -3.82 -0.02 0.47 16 5 C -0.14 -1.35 9.96 37.16 0.37 -0.98 16 6 C 0.06 0.85 3.88 -3.82 -0.01 0.83 16 7 C -0.08 -1.23 1.90 -90.62 -0.17 -1.40 16 8 H 0.07 0.97 6.32 -51.93 -0.33 0.64 16 9 C -0.10 -1.38 4.92 -26.73 -0.13 -1.51 16 10 C -0.12 -1.52 5.92 -26.73 -0.16 -1.68 16 11 C -0.12 -1.79 5.77 -26.73 -0.15 -1.95 16 12 C -0.13 -2.23 5.60 -26.75 -0.15 -2.38 16 13 C 0.16 3.03 2.23 -67.95 -0.15 2.88 16 14 H 0.07 1.52 7.58 -51.93 -0.39 1.12 16 15 N -0.76 -16.30 3.61 -55.24 -0.20 -16.50 16 16 C 0.56 15.52 7.71 -12.99 -0.10 15.42 16 17 O -0.58 -18.56 14.68 5.20 0.08 -18.48 16 18 C -0.55 -15.36 9.54 -35.63 -0.34 -15.70 16 19 H 0.06 1.67 7.85 -52.48 -0.41 1.26 16 20 C 0.09 2.50 5.50 -17.37 -0.10 2.40 16 21 N -0.77 -23.12 11.83 55.55 0.66 -22.47 16 22 Si 0.90 20.27 29.56 -169.99 -5.02 15.24 16 23 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 24 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 25 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 26 H 0.06 0.80 6.23 -51.93 -0.32 0.48 16 27 H 0.05 0.60 6.30 -51.93 -0.33 0.27 16 28 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.07 0.69 6.57 -51.93 -0.34 0.35 16 30 H 0.08 0.84 6.34 -51.93 -0.33 0.51 16 31 H 0.04 0.42 5.92 -51.93 -0.31 0.11 16 32 H 0.07 0.86 7.81 -51.93 -0.41 0.46 16 33 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.05 0.46 6.69 -51.93 -0.35 0.11 16 35 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 36 H 0.04 0.62 6.00 -51.93 -0.31 0.31 16 37 H 0.08 1.27 7.33 -51.93 -0.38 0.89 16 38 H 0.06 0.86 6.51 -51.93 -0.34 0.52 16 39 H 0.07 0.88 7.75 -51.93 -0.40 0.48 16 40 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 42 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.07 1.18 7.60 -51.93 -0.39 0.78 16 44 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 45 H 0.07 1.45 8.14 -51.93 -0.42 1.02 16 46 H 0.38 7.44 6.65 -40.82 -0.27 7.17 16 47 H 0.27 7.34 8.29 -40.82 -0.34 7.00 16 LS Contribution 351.47 15.07 5.30 5.30 Total: -1.00 -31.93 351.47 -9.09 -41.02 By element: Atomic # 1 Polarization: 16.37 SS G_CDS: -8.13 Total: 8.24 kcal Atomic # 6 Polarization: -4.11 SS G_CDS: -0.80 Total: -4.91 kcal Atomic # 7 Polarization: -45.90 SS G_CDS: -0.51 Total: -46.41 kcal Atomic # 8 Polarization: -18.56 SS G_CDS: 0.08 Total: -18.48 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -5.02 Total: 15.24 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -31.93 -9.09 -41.02 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356940736.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.479 kcal (2) G-P(sol) polarization free energy of solvation -31.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.020 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds