Wall clock time and date at job start Tue Mar 31 2020 06:01:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46899 * 109.47010 * 2 1 4 4 C 1.46899 * 110.99989 * 66.04552 * 3 2 1 5 5 C 1.53000 * 109.47262 * 199.58775 * 4 3 2 6 6 C 1.46906 * 110.99732 * 189.99672 * 3 2 1 7 7 C 1.52995 * 109.47155 * 75.69338 * 6 3 2 8 8 H 1.09004 * 109.47320 * 304.44836 * 7 6 3 9 9 C 1.53004 * 109.47425 * 64.44541 * 7 6 3 10 10 C 1.53000 * 109.47270 * 180.02562 * 9 7 6 11 11 C 1.52998 * 109.46795 * 299.99946 * 10 9 7 12 12 C 1.52995 * 109.47255 * 60.00110 * 11 10 9 13 13 C 1.52997 * 109.47391 * 184.44511 * 7 6 3 14 14 H 1.08996 * 109.47475 * 300.00296 * 13 7 6 15 15 N 1.46503 * 109.46877 * 60.00148 * 13 7 6 16 16 C 1.34774 * 119.99786 * 205.00453 * 15 13 7 17 17 O 1.21685 * 120.00349 * 359.97438 * 16 15 13 18 18 C 1.46382 * 120.00136 * 179.97438 * 16 15 13 19 19 H 1.08004 * 119.99346 * 5.63760 * 18 16 15 20 20 C 1.40041 * 120.00400 * 185.63342 * 18 16 15 21 21 N 1.30675 * 119.99507 * 5.65973 * 20 18 16 22 22 Si 1.86795 * 120.00235 * 185.66397 * 20 18 16 23 23 H 1.48496 * 109.47557 * 84.99870 * 22 20 18 24 24 H 1.48501 * 109.47050 * 204.99820 * 22 20 18 25 25 H 1.48502 * 109.46983 * 324.99630 * 22 20 18 26 26 H 1.09006 * 109.46947 * 59.99985 * 1 2 3 27 27 H 1.09005 * 109.47276 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47537 * 299.99962 * 1 2 3 29 29 H 1.09001 * 109.47537 * 240.00038 * 2 1 3 30 30 H 1.09006 * 109.46947 * 120.00015 * 2 1 3 31 31 H 1.08994 * 109.47153 * 319.58865 * 4 3 2 32 32 H 1.09003 * 109.47158 * 79.58824 * 4 3 2 33 33 H 1.09004 * 109.47094 * 64.70588 * 5 4 3 34 34 H 1.09000 * 109.46999 * 184.70661 * 5 4 3 35 35 H 1.09002 * 109.47055 * 304.70573 * 5 4 3 36 36 H 1.08991 * 109.47229 * 315.68736 * 6 3 2 37 37 H 1.09000 * 109.46760 * 195.68763 * 6 3 2 38 38 H 1.09005 * 109.47042 * 299.99992 * 9 7 6 39 39 H 1.08999 * 109.47314 * 59.99691 * 9 7 6 40 40 H 1.08998 * 109.47127 * 59.99982 * 10 9 7 41 41 H 1.09002 * 109.46717 * 180.02562 * 10 9 7 42 42 H 1.08999 * 109.46861 * 180.02562 * 11 10 9 43 43 H 1.09006 * 109.46992 * 300.00053 * 11 10 9 44 44 H 1.08992 * 109.47313 * 60.00069 * 12 11 10 45 45 H 1.09005 * 109.47130 * 180.02562 * 12 11 10 46 46 H 0.97000 * 120.00365 * 24.99378 * 15 13 7 47 47 H 0.97007 * 119.99583 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.6701 2.0669 1.2533 5 6 1.7414 3.5813 1.0470 6 6 3.4685 1.4311 -0.2381 7 6 3.7504 1.1723 -1.7194 8 1 3.2991 0.2252 -2.0151 9 6 3.1542 2.3050 -2.5576 10 6 3.4356 2.0458 -4.0390 11 6 4.9471 1.9833 -4.2676 12 6 5.5433 0.8507 -3.4295 13 6 5.2620 1.1102 -1.9477 14 1 5.7134 2.0572 -1.6520 15 7 5.8329 0.0255 -1.1452 16 6 7.1276 0.0716 -0.7739 17 8 7.8226 1.0138 -1.1055 18 6 7.6979 -1.0119 0.0284 19 1 7.1087 -1.8905 0.2459 20 6 9.0075 -0.9092 0.5139 21 7 9.6816 0.1976 0.3459 22 14 9.7906 -2.3543 1.4014 23 1 10.3839 -3.2836 0.4067 24 1 10.8542 -1.8587 2.3116 25 1 8.7564 -3.0693 2.1915 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 0.6589 1.7877 1.5490 32 1 2.3713 1.7732 2.0345 33 1 0.9825 3.8859 0.3263 34 1 1.5641 4.0860 1.9967 35 1 2.7284 3.8507 0.6711 36 1 3.9602 0.6673 0.3642 37 1 3.8510 2.4137 0.0382 38 1 2.0773 2.3492 -2.3950 39 1 3.6055 3.2521 -2.2619 40 1 2.9840 1.0988 -4.3343 41 1 3.0112 2.8530 -4.6360 42 1 5.1476 1.7991 -5.3230 43 1 5.3987 2.9304 -3.9722 44 1 5.0918 -0.0963 -3.7248 45 1 6.6203 0.8065 -3.5920 46 1 5.2790 -0.7257 -0.8810 47 1 10.5886 0.2689 0.6825 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000356940739.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:17 Heat of formation + Delta-G solvation = -65.441919 kcal Electronic energy + Delta-G solvation = -23752.120327 eV Core-core repulsion = 20547.448437 eV Total energy + Delta-G solvation = -3204.671890 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.33808 -37.51237 -36.34220 -32.98493 -32.26478 -31.80627 -31.56057 -29.08273 -28.40842 -26.01169 -24.66446 -23.04316 -22.18550 -21.25690 -19.97560 -19.47515 -19.38674 -17.10666 -15.77177 -15.54360 -15.30353 -15.09973 -14.61031 -14.14083 -14.01639 -13.69989 -13.62357 -13.52224 -13.11490 -12.59315 -12.34069 -12.22558 -12.12758 -11.87306 -11.75581 -11.51151 -11.36158 -11.33157 -11.15111 -11.11606 -11.01195 -10.66303 -10.57412 -10.46865 -10.39249 -10.24139 -10.02215 -9.91565 -9.59819 -8.82170 -8.18079 -7.55150 -7.40266 -6.17756 -4.60465 3.15065 3.21575 3.23854 3.96144 4.12206 4.61567 4.80912 4.94011 4.95805 5.15589 5.19759 5.22058 5.33364 5.37308 5.44054 5.50066 5.57498 5.66226 5.72632 5.74759 5.79317 5.83704 5.90195 5.93374 5.98510 6.03109 6.04217 6.06329 6.13519 6.15847 6.25046 6.30355 6.46900 6.50672 6.52922 6.56589 6.63077 6.89357 6.98720 7.23133 7.23895 7.45477 7.97956 8.18052 8.37925 9.05429 9.59737 10.63391 10.83133 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.014715 B = 0.005071 C = 0.004275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1902.380227 B = 5520.610061 C = 6547.945483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.047 3.953 3 N -0.536 5.536 4 C 0.045 3.955 5 C -0.145 4.145 6 C 0.059 3.941 7 C -0.082 4.082 8 H 0.066 0.934 9 C -0.099 4.099 10 C -0.118 4.118 11 C -0.117 4.117 12 C -0.125 4.125 13 C 0.162 3.838 14 H 0.073 0.927 15 N -0.762 5.762 16 C 0.558 3.442 17 O -0.581 6.581 18 C -0.549 4.549 19 H 0.065 0.935 20 C 0.090 3.910 21 N -0.770 5.770 22 Si 0.905 3.095 23 H -0.271 1.271 24 H -0.280 1.280 25 H -0.267 1.267 26 H 0.061 0.939 27 H 0.055 0.945 28 H 0.052 0.948 29 H 0.076 0.924 30 H 0.031 0.969 31 H 0.072 0.928 32 H 0.033 0.967 33 H 0.058 0.942 34 H 0.052 0.948 35 H 0.057 0.943 36 H 0.046 0.954 37 H 0.072 0.928 38 H 0.071 0.929 39 H 0.056 0.944 40 H 0.056 0.944 41 H 0.054 0.946 42 H 0.054 0.946 43 H 0.060 0.940 44 H 0.052 0.948 45 H 0.067 0.933 46 H 0.376 0.624 47 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.983 1.845 -1.950 17.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.081 4.081 3 N -0.261 5.261 4 C -0.082 4.082 5 C -0.203 4.203 6 C -0.069 4.069 7 C -0.101 4.101 8 H 0.084 0.916 9 C -0.137 4.137 10 C -0.156 4.156 11 C -0.155 4.155 12 C -0.164 4.164 13 C 0.055 3.945 14 H 0.091 0.909 15 N -0.415 5.415 16 C 0.362 3.638 17 O -0.464 6.464 18 C -0.586 4.586 19 H 0.083 0.917 20 C -0.130 4.130 21 N -0.398 5.398 22 Si 0.730 3.270 23 H -0.197 1.197 24 H -0.206 1.206 25 H -0.191 1.191 26 H 0.080 0.920 27 H 0.074 0.926 28 H 0.071 0.929 29 H 0.094 0.906 30 H 0.049 0.951 31 H 0.090 0.910 32 H 0.051 0.949 33 H 0.077 0.923 34 H 0.072 0.928 35 H 0.076 0.924 36 H 0.064 0.936 37 H 0.091 0.909 38 H 0.090 0.910 39 H 0.074 0.926 40 H 0.075 0.925 41 H 0.073 0.927 42 H 0.072 0.928 43 H 0.079 0.921 44 H 0.071 0.929 45 H 0.086 0.914 46 H 0.207 0.793 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -16.510 2.907 -2.522 16.953 hybrid contribution 0.615 -1.603 1.242 2.119 sum -15.896 1.305 -1.280 16.000 Atomic orbital electron populations 1.21812 0.95348 1.01150 1.02136 1.22098 0.95513 0.89500 1.00965 1.62074 1.14764 1.15201 1.34037 1.22115 1.00482 0.95030 0.90620 1.21757 1.02504 0.94914 1.01109 1.22187 0.86239 1.01914 0.96535 1.21352 0.95484 0.99119 0.94167 0.91552 1.21407 1.01012 0.97738 0.93567 1.21559 0.96268 1.00920 0.96812 1.21514 0.95334 0.99507 0.99138 1.21926 1.01370 0.97366 0.95758 1.20499 0.90708 0.93192 0.90065 0.90872 1.46197 1.12951 1.23804 1.58588 1.18156 0.79002 0.87060 0.79582 1.90587 1.59431 1.36909 1.59480 1.20879 0.98918 1.03936 1.34831 0.91673 1.25665 0.96919 0.95798 0.94578 1.70001 1.09788 1.24737 1.35310 0.86443 0.79130 0.81946 0.79527 1.19668 1.20563 1.19101 0.92018 0.92648 0.92912 0.90586 0.95070 0.91001 0.94908 0.92267 0.92848 0.92408 0.93563 0.90932 0.91039 0.92552 0.92506 0.92714 0.92759 0.92131 0.92905 0.91444 0.79263 0.92156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 9.88 37.16 0.37 -1.01 16 2 C 0.05 0.54 5.50 -3.83 -0.02 0.52 16 3 N -0.54 -6.64 3.80 -234.63 -0.89 -7.53 16 4 C 0.05 0.52 5.55 -3.82 -0.02 0.50 16 5 C -0.15 -1.55 10.07 37.16 0.37 -1.18 16 6 C 0.06 0.87 4.11 -3.82 -0.02 0.86 16 7 C -0.08 -1.21 1.82 -90.62 -0.16 -1.37 16 8 H 0.07 0.96 6.67 -51.93 -0.35 0.61 16 9 C -0.10 -1.31 5.09 -26.73 -0.14 -1.44 16 10 C -0.12 -1.48 5.92 -26.73 -0.16 -1.64 16 11 C -0.12 -1.70 5.92 -26.73 -0.16 -1.86 16 12 C -0.13 -2.23 5.50 -26.71 -0.15 -2.38 16 13 C 0.16 3.07 1.90 -67.91 -0.13 2.94 16 14 H 0.07 1.62 7.58 -51.93 -0.39 1.23 16 15 N -0.76 -16.73 4.31 -55.19 -0.24 -16.97 16 16 C 0.56 15.71 7.69 -12.99 -0.10 15.61 16 17 O -0.58 -18.65 14.75 5.20 0.08 -18.57 16 18 C -0.55 -15.51 9.54 -35.63 -0.34 -15.84 16 19 H 0.07 1.70 7.85 -52.48 -0.41 1.29 16 20 C 0.09 2.52 5.49 -17.37 -0.10 2.43 16 21 N -0.77 -23.16 11.88 55.55 0.66 -22.50 16 22 Si 0.90 20.31 29.56 -169.99 -5.03 15.28 16 23 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 24 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 25 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 26 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.05 0.47 6.25 -51.93 -0.32 0.15 16 29 H 0.08 0.89 6.57 -51.93 -0.34 0.55 16 30 H 0.03 0.37 8.12 -51.93 -0.42 -0.05 16 31 H 0.07 0.73 5.88 -51.93 -0.31 0.42 16 32 H 0.03 0.41 8.00 -51.93 -0.42 -0.01 16 33 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.06 0.69 6.65 -51.93 -0.35 0.35 16 36 H 0.05 0.78 7.18 -51.93 -0.37 0.41 16 37 H 0.07 1.15 6.44 -51.93 -0.33 0.82 16 38 H 0.07 0.90 7.74 -51.93 -0.40 0.50 16 39 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 44 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 45 H 0.07 1.44 8.14 -51.93 -0.42 1.01 16 46 H 0.38 7.45 8.37 -40.82 -0.34 7.11 16 47 H 0.27 7.34 8.29 -40.82 -0.34 7.00 16 LS Contribution 360.75 15.07 5.44 5.44 Total: -1.00 -32.27 360.75 -9.27 -41.53 By element: Atomic # 1 Polarization: 15.75 SS G_CDS: -8.54 Total: 7.21 kcal Atomic # 6 Polarization: -3.13 SS G_CDS: -0.74 Total: -3.88 kcal Atomic # 7 Polarization: -46.54 SS G_CDS: -0.47 Total: -47.01 kcal Atomic # 8 Polarization: -18.65 SS G_CDS: 0.08 Total: -18.57 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -5.03 Total: 15.28 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -32.27 -9.27 -41.53 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356940739.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.910 kcal (2) G-P(sol) polarization free energy of solvation -32.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.532 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds