Wall clock time and date at job start Tue Mar 31 2020 06:01:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46899 * 109.47010 * 2 1 4 4 C 1.46899 * 110.99989 * 66.04552 * 3 2 1 5 5 C 1.53000 * 109.47262 * 199.58775 * 4 3 2 6 6 C 1.46906 * 110.99732 * 189.99672 * 3 2 1 7 7 C 1.52995 * 109.47155 * 75.69338 * 6 3 2 8 8 H 1.09004 * 109.47320 * 304.44836 * 7 6 3 9 9 C 1.53004 * 109.47425 * 64.44541 * 7 6 3 10 10 C 1.53000 * 109.47270 * 180.02562 * 9 7 6 11 11 C 1.52998 * 109.46795 * 299.99946 * 10 9 7 12 12 C 1.52995 * 109.47255 * 60.00110 * 11 10 9 13 13 C 1.52997 * 109.47391 * 184.44511 * 7 6 3 14 14 H 1.08996 * 109.47475 * 300.00296 * 13 7 6 15 15 N 1.46503 * 109.46877 * 60.00148 * 13 7 6 16 16 C 1.34774 * 119.99786 * 205.00453 * 15 13 7 17 17 O 1.21685 * 120.00349 * 359.97438 * 16 15 13 18 18 C 1.46382 * 120.00136 * 179.97438 * 16 15 13 19 19 H 1.08004 * 119.99346 * 5.63760 * 18 16 15 20 20 C 1.40041 * 120.00400 * 185.63342 * 18 16 15 21 21 N 1.30675 * 119.99507 * 5.65973 * 20 18 16 22 22 Si 1.86795 * 120.00235 * 185.66397 * 20 18 16 23 23 H 1.48496 * 109.47557 * 84.99870 * 22 20 18 24 24 H 1.48501 * 109.47050 * 204.99820 * 22 20 18 25 25 H 1.48502 * 109.46983 * 324.99630 * 22 20 18 26 26 H 1.09006 * 109.46947 * 59.99985 * 1 2 3 27 27 H 1.09005 * 109.47276 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47537 * 299.99962 * 1 2 3 29 29 H 1.09001 * 109.47537 * 240.00038 * 2 1 3 30 30 H 1.09006 * 109.46947 * 120.00015 * 2 1 3 31 31 H 1.08994 * 109.47153 * 319.58865 * 4 3 2 32 32 H 1.09003 * 109.47158 * 79.58824 * 4 3 2 33 33 H 1.09004 * 109.47094 * 64.70588 * 5 4 3 34 34 H 1.09000 * 109.46999 * 184.70661 * 5 4 3 35 35 H 1.09002 * 109.47055 * 304.70573 * 5 4 3 36 36 H 1.08991 * 109.47229 * 315.68736 * 6 3 2 37 37 H 1.09000 * 109.46760 * 195.68763 * 6 3 2 38 38 H 1.09005 * 109.47042 * 299.99992 * 9 7 6 39 39 H 1.08999 * 109.47314 * 59.99691 * 9 7 6 40 40 H 1.08998 * 109.47127 * 59.99982 * 10 9 7 41 41 H 1.09002 * 109.46717 * 180.02562 * 10 9 7 42 42 H 1.08999 * 109.46861 * 180.02562 * 11 10 9 43 43 H 1.09006 * 109.46992 * 300.00053 * 11 10 9 44 44 H 1.08992 * 109.47313 * 60.00069 * 12 11 10 45 45 H 1.09005 * 109.47130 * 180.02562 * 12 11 10 46 46 H 0.97000 * 120.00365 * 24.99378 * 15 13 7 47 47 H 0.97007 * 119.99583 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.6701 2.0669 1.2533 5 6 1.7414 3.5813 1.0470 6 6 3.4685 1.4311 -0.2381 7 6 3.7504 1.1723 -1.7194 8 1 3.2991 0.2252 -2.0151 9 6 3.1542 2.3050 -2.5576 10 6 3.4356 2.0458 -4.0390 11 6 4.9471 1.9833 -4.2676 12 6 5.5433 0.8507 -3.4295 13 6 5.2620 1.1102 -1.9477 14 1 5.7134 2.0572 -1.6520 15 7 5.8329 0.0255 -1.1452 16 6 7.1276 0.0716 -0.7739 17 8 7.8226 1.0138 -1.1055 18 6 7.6979 -1.0119 0.0284 19 1 7.1087 -1.8905 0.2459 20 6 9.0075 -0.9092 0.5139 21 7 9.6816 0.1976 0.3459 22 14 9.7906 -2.3543 1.4014 23 1 10.3839 -3.2836 0.4067 24 1 10.8542 -1.8587 2.3116 25 1 8.7564 -3.0693 2.1915 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 0.6589 1.7877 1.5490 32 1 2.3713 1.7732 2.0345 33 1 0.9825 3.8859 0.3263 34 1 1.5641 4.0860 1.9967 35 1 2.7284 3.8507 0.6711 36 1 3.9602 0.6673 0.3642 37 1 3.8510 2.4137 0.0382 38 1 2.0773 2.3492 -2.3950 39 1 3.6055 3.2521 -2.2619 40 1 2.9840 1.0988 -4.3343 41 1 3.0112 2.8530 -4.6360 42 1 5.1476 1.7991 -5.3230 43 1 5.3987 2.9304 -3.9722 44 1 5.0918 -0.0963 -3.7248 45 1 6.6203 0.8065 -3.5920 46 1 5.2790 -0.7257 -0.8810 47 1 10.5886 0.2689 0.6825 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000356940739.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:16 Heat of formation + Delta-G solvation = -86.506601 kcal Electronic energy + Delta-G solvation = -23753.033760 eV Core-core repulsion = 20547.448437 eV Total energy + Delta-G solvation = -3205.585323 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.74363 -38.98906 -37.97566 -34.87726 -34.24621 -32.90488 -32.64954 -30.53918 -29.62109 -28.00996 -25.86961 -23.93873 -23.65013 -22.48983 -21.37487 -21.11031 -20.74500 -19.08299 -17.43999 -17.00409 -16.68520 -16.28295 -16.04211 -15.67797 -15.22491 -15.06630 -14.81447 -14.73423 -14.48541 -14.37439 -13.98457 -13.55806 -13.14051 -13.12427 -12.99789 -12.83552 -12.80649 -12.62283 -12.55727 -12.42320 -12.30135 -12.19445 -12.04930 -12.02406 -11.59073 -11.51635 -11.25108 -11.21811 -10.96754 -10.92204 -9.80577 -9.42033 -9.19673 -8.30812 -6.84591 1.37138 1.39601 1.53209 2.22978 2.48188 2.91104 3.13260 3.60901 3.76167 3.90623 4.05483 4.05653 4.19014 4.31998 4.33240 4.35809 4.42439 4.53413 4.56667 4.62676 4.65492 4.66507 4.72517 4.76242 4.86311 4.90515 4.98978 5.09179 5.13189 5.16686 5.19114 5.23759 5.29535 5.30905 5.34557 5.36366 5.39380 5.43239 5.54569 5.61472 5.89687 6.13719 6.22911 6.25144 6.36422 6.86923 7.58370 8.51682 8.68762 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.014715 B = 0.005071 C = 0.004275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1902.380227 B = 5520.610061 C = 6547.945483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.043 3.957 3 N -0.528 5.528 4 C 0.043 3.957 5 C -0.141 4.141 6 C 0.067 3.933 7 C -0.067 4.067 8 H 0.081 0.919 9 C -0.092 4.092 10 C -0.110 4.110 11 C -0.112 4.112 12 C -0.120 4.120 13 C 0.162 3.838 14 H 0.032 0.968 15 N -0.748 5.748 16 C 0.544 3.456 17 O -0.632 6.632 18 C -0.577 4.577 19 H 0.083 0.917 20 C 0.031 3.969 21 N -0.823 5.823 22 Si 0.995 3.005 23 H -0.262 1.262 24 H -0.273 1.273 25 H -0.250 1.250 26 H 0.064 0.936 27 H 0.068 0.932 28 H 0.057 0.943 29 H 0.074 0.926 30 H 0.022 0.978 31 H 0.093 0.907 32 H 0.017 0.983 33 H 0.068 0.932 34 H 0.066 0.934 35 H 0.037 0.963 36 H 0.020 0.980 37 H 0.055 0.945 38 H 0.089 0.911 39 H 0.045 0.955 40 H 0.071 0.929 41 H 0.079 0.921 42 H 0.072 0.928 43 H 0.047 0.953 44 H 0.068 0.932 45 H 0.021 0.979 46 H 0.389 0.611 47 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.606 0.392 -2.064 19.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.085 4.085 3 N -0.253 5.253 4 C -0.085 4.085 5 C -0.199 4.199 6 C -0.061 4.061 7 C -0.086 4.086 8 H 0.099 0.901 9 C -0.130 4.130 10 C -0.147 4.147 11 C -0.150 4.150 12 C -0.159 4.159 13 C 0.056 3.944 14 H 0.050 0.950 15 N -0.401 5.401 16 C 0.347 3.653 17 O -0.519 6.519 18 C -0.614 4.614 19 H 0.101 0.899 20 C -0.184 4.184 21 N -0.453 5.453 22 Si 0.814 3.186 23 H -0.187 1.187 24 H -0.198 1.198 25 H -0.173 1.173 26 H 0.083 0.917 27 H 0.087 0.913 28 H 0.076 0.924 29 H 0.093 0.907 30 H 0.041 0.959 31 H 0.111 0.889 32 H 0.035 0.965 33 H 0.087 0.913 34 H 0.085 0.915 35 H 0.056 0.944 36 H 0.038 0.962 37 H 0.073 0.927 38 H 0.107 0.893 39 H 0.064 0.936 40 H 0.090 0.910 41 H 0.098 0.902 42 H 0.091 0.909 43 H 0.065 0.935 44 H 0.086 0.914 45 H 0.040 0.960 46 H 0.222 0.778 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -19.205 1.442 -2.647 19.441 hybrid contribution 1.392 -1.115 1.277 2.193 sum -17.814 0.328 -1.371 17.869 Atomic orbital electron populations 1.21753 0.93208 1.02191 1.02486 1.22203 0.97207 0.88544 1.00515 1.62124 1.12424 1.16106 1.34615 1.22212 1.01118 0.95436 0.89696 1.21728 1.01622 0.94468 1.02054 1.21983 0.87975 0.99999 0.96118 1.21220 0.91980 1.00773 0.94647 0.90120 1.21374 1.01603 0.96205 0.93853 1.21529 0.94174 1.02706 0.96318 1.21494 0.97001 0.97214 0.99337 1.21839 0.98848 0.99749 0.95453 1.20631 0.93242 0.90165 0.90326 0.95010 1.45873 1.11360 1.24790 1.58032 1.18507 0.80537 0.86636 0.79594 1.90541 1.61304 1.38675 1.61420 1.21413 1.00131 1.04625 1.35237 0.89861 1.26916 0.97233 0.99193 0.95037 1.70171 1.10512 1.27783 1.36813 0.85082 0.78176 0.77191 0.78135 1.18683 1.19754 1.17317 0.91735 0.91326 0.92408 0.90717 0.95939 0.88928 0.96461 0.91334 0.91468 0.94355 0.96204 0.92662 0.89279 0.93610 0.91024 0.90223 0.90931 0.93451 0.91367 0.96026 0.77775 0.91648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.18 9.88 71.98 0.71 -1.47 16 2 C 0.04 0.90 5.50 86.30 0.48 1.38 16 3 N -0.53 -12.45 3.80 -896.24 -3.40 -15.85 16 4 C 0.04 0.93 5.55 86.30 0.48 1.41 16 5 C -0.14 -2.87 10.07 71.98 0.72 -2.14 16 6 C 0.07 2.04 4.11 86.30 0.35 2.39 16 7 C -0.07 -1.95 1.82 -10.79 -0.02 -1.97 16 8 H 0.08 2.18 6.67 -2.38 -0.02 2.16 16 9 C -0.09 -2.28 5.09 30.60 0.16 -2.12 16 10 C -0.11 -2.44 5.92 30.59 0.18 -2.26 16 11 C -0.11 -3.20 5.92 30.59 0.18 -3.02 16 12 C -0.12 -4.39 5.50 30.61 0.17 -4.22 16 13 C 0.16 6.42 1.90 45.00 0.09 6.51 16 14 H 0.03 1.52 7.58 -2.39 -0.02 1.50 16 15 N -0.75 -34.28 4.31 -446.76 -1.93 -36.20 16 16 C 0.54 32.15 7.69 86.36 0.66 32.81 16 17 O -0.63 -43.25 14.75 -4.30 -0.06 -43.32 16 18 C -0.58 -33.44 9.54 24.83 0.24 -33.20 16 19 H 0.08 4.35 7.85 -2.91 -0.02 4.33 16 20 C 0.03 1.77 5.49 85.30 0.47 2.24 16 21 N -0.82 -51.44 11.88 21.83 0.26 -51.18 16 22 Si 0.99 41.86 29.56 68.60 2.03 43.89 16 23 H -0.26 -10.59 7.11 99.48 0.71 -9.88 16 24 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 25 H -0.25 -9.75 7.11 99.48 0.71 -9.04 16 26 H 0.06 1.00 8.14 -2.38 -0.02 0.98 16 27 H 0.07 0.92 8.14 -2.38 -0.02 0.90 16 28 H 0.06 0.85 6.25 -2.39 -0.01 0.84 16 29 H 0.07 1.59 6.57 -2.39 -0.02 1.57 16 30 H 0.02 0.51 8.12 -2.38 -0.02 0.49 16 31 H 0.09 1.65 5.88 -2.39 -0.01 1.64 16 32 H 0.02 0.43 8.00 -2.39 -0.02 0.41 16 33 H 0.07 1.27 8.14 -2.38 -0.02 1.25 16 34 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 35 H 0.04 0.92 6.65 -2.39 -0.02 0.91 16 36 H 0.02 0.69 7.18 -2.39 -0.02 0.68 16 37 H 0.05 1.85 6.44 -2.39 -0.02 1.84 16 38 H 0.09 1.96 7.74 -2.38 -0.02 1.94 16 39 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 40 H 0.07 1.44 8.14 -2.39 -0.02 1.43 16 41 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 42 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 43 H 0.05 1.46 8.14 -2.38 -0.02 1.44 16 44 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 45 H 0.02 0.96 8.14 -2.38 -0.02 0.94 16 46 H 0.39 15.72 8.37 -92.71 -0.78 14.94 16 47 H 0.27 15.52 8.29 -92.70 -0.77 14.75 16 Total: -1.00 -74.72 360.75 1.92 -72.81 By element: Atomic # 1 Polarization: 33.37 SS G_CDS: 0.16 Total: 33.52 kcal Atomic # 6 Polarization: -8.53 SS G_CDS: 4.87 Total: -3.67 kcal Atomic # 7 Polarization: -98.17 SS G_CDS: -5.07 Total: -103.24 kcal Atomic # 8 Polarization: -43.25 SS G_CDS: -0.06 Total: -43.32 kcal Atomic # 14 Polarization: 41.86 SS G_CDS: 2.03 Total: 43.89 kcal Total: -74.72 1.92 -72.81 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356940739.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.701 kcal (2) G-P(sol) polarization free energy of solvation -74.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.805 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds