Wall clock time and date at job start Tue Mar 31 2020 06:01:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46893 * 109.47200 * 2 1 4 4 C 1.46898 * 111.00046 * 160.13401 * 3 2 1 5 5 C 1.52994 * 109.47104 * 288.17788 * 4 3 2 6 6 C 1.46905 * 111.00310 * 284.09033 * 3 2 1 7 7 C 1.52995 * 109.47189 * 162.41543 * 6 3 2 8 8 H 1.09001 * 109.47190 * 57.21746 * 7 6 3 9 9 C 1.52996 * 109.47351 * 297.21919 * 7 6 3 10 10 C 1.53003 * 109.47087 * 180.02562 * 9 7 6 11 11 C 1.52995 * 109.47595 * 59.99557 * 10 9 7 12 12 C 1.52999 * 109.46918 * 300.00246 * 11 10 9 13 13 C 1.52995 * 109.47157 * 177.21582 * 7 6 3 14 14 H 1.09001 * 109.46937 * 60.00008 * 13 7 6 15 15 N 1.46507 * 109.47112 * 300.00553 * 13 7 6 16 16 C 1.34780 * 119.99879 * 155.00357 * 15 13 7 17 17 O 1.21687 * 120.00507 * 359.97438 * 16 15 13 18 18 C 1.46383 * 119.99556 * 180.02562 * 16 15 13 19 19 H 1.07992 * 120.00082 * 349.10579 * 18 16 15 20 20 C 1.40042 * 119.99518 * 169.11291 * 18 16 15 21 21 N 1.30681 * 119.99759 * 156.90891 * 20 18 16 22 22 Si 1.86802 * 120.00415 * 336.90672 * 20 18 16 23 23 H 1.48499 * 109.46913 * 0.02562 * 22 20 18 24 24 H 1.48497 * 109.47013 * 240.00328 * 22 20 18 25 25 H 1.48497 * 109.47151 * 120.00025 * 22 20 18 26 26 H 1.09000 * 109.46851 * 187.15970 * 1 2 3 27 27 H 1.09002 * 109.46747 * 307.15982 * 1 2 3 28 28 H 1.08998 * 109.47099 * 67.16033 * 1 2 3 29 29 H 1.09005 * 109.46544 * 239.99914 * 2 1 3 30 30 H 1.08997 * 109.47248 * 120.00445 * 2 1 3 31 31 H 1.08995 * 109.46908 * 48.17686 * 4 3 2 32 32 H 1.09006 * 109.47126 * 168.17612 * 4 3 2 33 33 H 1.09004 * 109.47400 * 308.13283 * 5 4 3 34 34 H 1.09000 * 109.47572 * 68.13848 * 5 4 3 35 35 H 1.09004 * 109.47071 * 188.13664 * 5 4 3 36 36 H 1.09002 * 109.46928 * 42.41886 * 6 3 2 37 37 H 1.08998 * 109.46747 * 282.41775 * 6 3 2 38 38 H 1.09004 * 109.47302 * 299.99457 * 9 7 6 39 39 H 1.08998 * 109.47408 * 59.99744 * 9 7 6 40 40 H 1.09000 * 109.47457 * 180.02562 * 10 9 7 41 41 H 1.09008 * 109.46683 * 299.99400 * 10 9 7 42 42 H 1.09001 * 109.46937 * 59.99953 * 11 10 9 43 43 H 1.09002 * 109.47307 * 179.97438 * 11 10 9 44 44 H 1.08997 * 109.47510 * 299.99825 * 12 11 10 45 45 H 1.09006 * 109.46748 * 179.97438 * 12 11 10 46 46 H 0.97000 * 119.99414 * 334.99294 * 15 13 7 47 47 H 0.96992 * 119.99818 * 5.10263 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 3.4112 1.4513 0.4660 5 6 3.4582 1.1830 1.9715 6 6 1.8805 1.9926 -1.3302 7 6 1.9747 3.5148 -1.2079 8 1 2.9209 3.7837 -0.7385 9 6 0.8161 4.0303 -0.3518 10 6 0.9100 5.5526 -0.2301 11 6 0.8343 6.1814 -1.6228 12 6 1.9929 5.6658 -2.4788 13 6 1.8992 4.1439 -2.6004 14 1 0.9529 3.8750 -3.0698 15 7 3.0086 3.6502 -3.4201 16 6 2.8995 3.6356 -4.7634 17 8 1.8794 4.0321 -5.2954 18 6 4.0078 3.1417 -5.5823 19 1 4.9712 2.9554 -5.1314 20 6 3.8186 2.9110 -6.9506 21 7 4.8433 2.9147 -7.7616 22 14 2.1016 2.5980 -7.6166 23 1 1.1219 2.6466 -6.5017 24 1 2.0560 1.2596 -8.2583 25 1 1.7620 3.6396 -8.6191 26 1 -0.3633 -1.0197 0.1281 27 1 -0.3633 0.6208 0.8190 28 1 -0.3633 0.3989 -0.9471 29 1 1.8933 -0.5139 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 4.0052 0.7008 -0.0555 32 1 3.8163 2.4423 0.2608 33 1 2.7528 1.8403 2.4800 34 1 3.1903 0.1441 2.1640 35 1 4.4650 1.3734 2.3433 36 1 0.9136 1.7214 -1.7541 37 1 2.6768 1.6303 -1.9803 38 1 -0.1302 3.7615 -0.8212 39 1 0.8698 3.5821 0.6403 40 1 0.0849 5.9199 0.3802 41 1 1.8564 5.8219 0.2392 42 1 -0.1120 5.9121 -2.0920 43 1 0.9007 7.2659 -1.5360 44 1 2.9392 5.9350 -2.0096 45 1 1.9386 6.1134 -3.4712 46 1 3.8216 3.3340 -2.9960 47 1 5.7419 3.0032 -7.4073 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000356940740.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:19 Heat of formation + Delta-G solvation = -74.310424 kcal Electronic energy + Delta-G solvation = -23864.245376 eV Core-core repulsion = 20659.188919 eV Total energy + Delta-G solvation = -3205.056457 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.49821 -37.70188 -36.67677 -33.15907 -32.71308 -31.89011 -31.73504 -29.21355 -28.51314 -25.91606 -24.74835 -23.02906 -22.26413 -21.34267 -20.09355 -19.57381 -19.46781 -17.83430 -15.97975 -15.72485 -15.27565 -15.06556 -14.72449 -14.17353 -14.03127 -13.83080 -13.74461 -13.48282 -13.25612 -13.10340 -12.48057 -12.32717 -12.20330 -12.03486 -11.92682 -11.85048 -11.55327 -11.44936 -11.43874 -11.20960 -10.84637 -10.73006 -10.68137 -10.51348 -10.18983 -10.12585 -9.93103 -9.73702 -9.23641 -8.79477 -8.27381 -7.89733 -7.50939 -6.96936 -4.81278 3.52338 3.59705 3.88642 4.08012 4.33861 4.50521 4.62916 4.84144 4.88772 5.06844 5.10175 5.15681 5.20875 5.29373 5.37053 5.43970 5.48932 5.52637 5.58787 5.64160 5.67615 5.71842 5.77807 5.85565 5.90261 5.91203 5.93631 5.96951 6.03548 6.09298 6.17480 6.21680 6.35242 6.40726 6.41403 6.45093 6.50473 6.74230 6.83676 7.14663 7.15532 7.65882 7.79608 7.90531 8.21088 8.90827 9.23553 10.26601 10.34352 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.014955 B = 0.005422 C = 0.004683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1871.838647 B = 5162.971399 C = 5977.399572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.047 3.953 3 N -0.535 5.535 4 C 0.046 3.954 5 C -0.145 4.145 6 C 0.058 3.942 7 C -0.083 4.083 8 H 0.067 0.933 9 C -0.099 4.099 10 C -0.119 4.119 11 C -0.116 4.116 12 C -0.126 4.126 13 C 0.159 3.841 14 H 0.076 0.924 15 N -0.754 5.754 16 C 0.552 3.448 17 O -0.617 6.617 18 C -0.612 4.612 19 H 0.066 0.934 20 C 0.071 3.929 21 N -0.831 5.831 22 Si 1.080 2.920 23 H -0.241 1.241 24 H -0.311 1.311 25 H -0.287 1.287 26 H 0.053 0.947 27 H 0.062 0.938 28 H 0.054 0.946 29 H 0.033 0.967 30 H 0.070 0.930 31 H 0.032 0.968 32 H 0.075 0.925 33 H 0.062 0.938 34 H 0.049 0.951 35 H 0.054 0.946 36 H 0.073 0.927 37 H 0.044 0.956 38 H 0.057 0.943 39 H 0.073 0.927 40 H 0.055 0.945 41 H 0.056 0.944 42 H 0.061 0.939 43 H 0.055 0.945 44 H 0.053 0.947 45 H 0.067 0.933 46 H 0.381 0.619 47 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.362 -2.279 18.930 19.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.080 4.080 3 N -0.260 5.260 4 C -0.082 4.082 5 C -0.202 4.202 6 C -0.069 4.069 7 C -0.103 4.103 8 H 0.085 0.915 9 C -0.137 4.137 10 C -0.156 4.156 11 C -0.155 4.155 12 C -0.165 4.165 13 C 0.053 3.947 14 H 0.094 0.906 15 N -0.405 5.405 16 C 0.359 3.641 17 O -0.508 6.508 18 C -0.648 4.648 19 H 0.084 0.916 20 C -0.148 4.148 21 N -0.458 5.458 22 Si 0.908 3.092 23 H -0.165 1.165 24 H -0.241 1.241 25 H -0.214 1.214 26 H 0.072 0.928 27 H 0.081 0.919 28 H 0.073 0.927 29 H 0.052 0.948 30 H 0.088 0.912 31 H 0.050 0.950 32 H 0.093 0.907 33 H 0.081 0.919 34 H 0.068 0.932 35 H 0.073 0.927 36 H 0.092 0.908 37 H 0.062 0.938 38 H 0.075 0.925 39 H 0.091 0.909 40 H 0.074 0.926 41 H 0.075 0.925 42 H 0.079 0.921 43 H 0.074 0.926 44 H 0.072 0.928 45 H 0.086 0.914 46 H 0.213 0.787 47 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -7.124 -1.978 17.523 19.019 hybrid contribution 2.248 -0.301 1.010 2.483 sum -4.876 -2.279 18.533 19.299 Atomic orbital electron populations 1.21759 0.95018 1.01098 1.02437 1.22092 0.96175 0.89252 1.00530 1.62106 1.19951 1.17462 1.26491 1.22111 0.89001 1.01375 0.95705 1.21771 1.01374 1.01463 0.95625 1.22185 1.01878 0.94414 0.88463 1.21367 0.99395 0.93856 0.95646 0.91466 1.21398 0.97631 0.94377 1.00259 1.21568 1.01122 0.96095 0.96859 1.21510 0.99221 0.99268 0.95467 1.21917 0.97560 0.96897 1.00144 1.20580 0.92706 0.92072 0.89364 0.90571 1.45952 1.17504 1.70081 1.06945 1.18284 0.87356 0.78415 0.80037 1.90465 1.33998 1.55062 1.71275 1.21902 0.97303 1.49941 0.95681 0.91597 1.26919 1.06386 0.88588 0.92897 1.70620 1.01117 1.36047 1.38006 0.83447 0.75108 0.74803 0.75887 1.16495 1.24084 1.21359 0.92762 0.91933 0.92710 0.94828 0.91156 0.94991 0.90667 0.91852 0.93168 0.92653 0.90812 0.93756 0.92459 0.90873 0.92581 0.92482 0.92066 0.92625 0.92801 0.91386 0.78725 0.91104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.47 9.93 37.16 0.37 -1.10 16 2 C 0.05 0.52 5.53 -3.82 -0.02 0.50 16 3 N -0.54 -6.31 3.69 -234.63 -0.87 -7.18 16 4 C 0.05 0.51 5.51 -3.83 -0.02 0.48 16 5 C -0.14 -1.31 9.83 37.15 0.37 -0.95 16 6 C 0.06 0.82 4.09 -3.82 -0.02 0.80 16 7 C -0.08 -1.16 1.79 -90.63 -0.16 -1.32 16 8 H 0.07 0.93 6.56 -51.93 -0.34 0.59 16 9 C -0.10 -1.22 5.07 -26.73 -0.14 -1.35 16 10 C -0.12 -1.40 5.92 -26.73 -0.16 -1.56 16 11 C -0.12 -1.59 5.92 -26.73 -0.16 -1.75 16 12 C -0.13 -2.12 5.49 -26.76 -0.15 -2.27 16 13 C 0.16 2.84 1.90 -67.95 -0.13 2.71 16 14 H 0.08 1.56 7.58 -51.93 -0.39 1.16 16 15 N -0.75 -15.84 4.34 -55.23 -0.24 -16.08 16 16 C 0.55 14.62 7.33 -12.98 -0.10 14.53 16 17 O -0.62 -17.74 12.11 5.20 0.06 -17.68 16 18 C -0.61 -17.37 9.84 -35.63 -0.35 -17.72 16 19 H 0.07 1.86 8.06 -52.49 -0.42 1.44 16 20 C 0.07 2.05 5.49 -17.37 -0.10 1.96 16 21 N -0.83 -24.27 13.65 55.55 0.76 -23.51 16 22 Si 1.08 28.03 27.38 -169.99 -4.65 23.37 16 23 H -0.24 -6.44 5.54 56.52 0.31 -6.12 16 24 H -0.31 -7.67 7.11 56.52 0.40 -7.26 16 25 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 26 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 28 H 0.05 0.61 6.97 -51.93 -0.36 0.25 16 29 H 0.03 0.40 8.00 -51.93 -0.42 -0.01 16 30 H 0.07 0.69 6.36 -51.93 -0.33 0.36 16 31 H 0.03 0.37 8.05 -51.93 -0.42 -0.05 16 32 H 0.07 0.86 6.37 -51.93 -0.33 0.52 16 33 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.05 0.43 6.80 -51.93 -0.35 0.08 16 35 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 36 H 0.07 1.10 6.63 -51.93 -0.34 0.76 16 37 H 0.04 0.71 7.25 -51.93 -0.38 0.33 16 38 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 39 H 0.07 0.87 7.68 -51.93 -0.40 0.47 16 40 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 41 H 0.06 0.66 8.14 -51.92 -0.42 0.23 16 42 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 43 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 44 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 45 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 46 H 0.38 7.36 8.37 -40.82 -0.34 7.01 16 47 H 0.28 7.84 8.72 -40.82 -0.36 7.49 16 LS Contribution 357.52 15.07 5.39 5.39 Total: -1.00 -30.47 357.52 -9.02 -39.49 By element: Atomic # 1 Polarization: 11.96 SS G_CDS: -8.72 Total: 3.24 kcal Atomic # 6 Polarization: -6.29 SS G_CDS: -0.75 Total: -7.04 kcal Atomic # 7 Polarization: -46.42 SS G_CDS: -0.35 Total: -46.77 kcal Atomic # 8 Polarization: -17.74 SS G_CDS: 0.06 Total: -17.68 kcal Atomic # 14 Polarization: 28.03 SS G_CDS: -4.65 Total: 23.37 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -30.47 -9.02 -39.49 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356940740.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.821 kcal (2) G-P(sol) polarization free energy of solvation -30.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.490 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds