Wall clock time and date at job start Tue Mar 31 2020 06:01:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46893 * 109.47259 * 2 1 4 4 C 1.46902 * 110.99716 * 73.13094 * 3 2 1 5 5 C 1.53005 * 109.47027 * 199.34405 * 4 3 2 6 6 C 1.46901 * 111.00111 * 197.07729 * 3 2 1 7 7 C 1.53008 * 109.46830 * 90.21220 * 6 3 2 8 8 H 1.08998 * 109.46806 * 56.47297 * 7 6 3 9 9 C 1.52998 * 109.46792 * 296.47573 * 7 6 3 10 10 C 1.53000 * 109.47033 * 180.02562 * 9 7 6 11 11 C 1.52997 * 109.47339 * 59.99737 * 10 9 7 12 12 C 1.52998 * 109.47272 * 300.00116 * 11 10 9 13 13 C 1.52997 * 109.47132 * 176.47585 * 7 6 3 14 14 H 1.09000 * 109.46942 * 300.00145 * 13 7 6 15 15 N 1.46506 * 109.47065 * 59.99843 * 13 7 6 16 16 C 1.34777 * 119.99924 * 204.99829 * 15 13 7 17 17 O 1.21688 * 119.99974 * 0.02562 * 16 15 13 18 18 C 1.46376 * 120.00108 * 179.97438 * 16 15 13 19 19 H 1.08001 * 119.99779 * 0.02562 * 18 16 15 20 20 C 1.40047 * 120.00012 * 180.02562 * 18 16 15 21 21 N 1.30666 * 120.00031 * 359.97438 * 20 18 16 22 22 Si 1.86800 * 119.99967 * 179.97438 * 20 18 16 23 23 H 1.48505 * 109.47118 * 89.99535 * 22 20 18 24 24 H 1.48499 * 109.47293 * 209.99937 * 22 20 18 25 25 H 1.48495 * 109.46993 * 329.99924 * 22 20 18 26 26 H 1.08996 * 109.47371 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47286 * 299.99565 * 1 2 3 28 28 H 1.09007 * 109.47251 * 59.99722 * 1 2 3 29 29 H 1.09011 * 109.47069 * 240.00434 * 2 1 3 30 30 H 1.08997 * 109.47283 * 120.00446 * 2 1 3 31 31 H 1.08996 * 109.47118 * 319.34042 * 4 3 2 32 32 H 1.08998 * 109.47762 * 79.34428 * 4 3 2 33 33 H 1.09001 * 109.47154 * 54.93256 * 5 4 3 34 34 H 1.09000 * 109.46884 * 174.92551 * 5 4 3 35 35 H 1.08998 * 109.47209 * 294.92922 * 5 4 3 36 36 H 1.09000 * 109.47525 * 330.21254 * 6 3 2 37 37 H 1.09003 * 109.47449 * 210.20603 * 6 3 2 38 38 H 1.08997 * 109.47599 * 59.99708 * 9 7 6 39 39 H 1.09002 * 109.47257 * 300.00218 * 9 7 6 40 40 H 1.09003 * 109.46781 * 299.99480 * 10 9 7 41 41 H 1.09003 * 109.46853 * 180.02562 * 10 9 7 42 42 H 1.09002 * 109.46882 * 60.00227 * 11 10 9 43 43 H 1.09001 * 109.46927 * 180.02562 * 11 10 9 44 44 H 1.09000 * 109.47348 * 179.97438 * 12 11 10 45 45 H 1.09003 * 109.46912 * 300.00297 * 12 11 10 46 46 H 0.96999 * 119.99919 * 24.99291 * 15 13 7 47 47 H 0.97007 * 120.00215 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3849 0.0000 4 6 1.8199 2.0139 1.3125 5 6 1.8765 3.5355 1.1627 6 6 3.4311 1.4443 -0.4027 7 6 3.5216 1.6114 -1.9210 8 1 2.9673 2.5002 -2.2223 9 6 2.9237 0.3809 -2.6060 10 6 3.0148 0.5477 -4.1241 11 6 4.4813 0.6973 -4.5337 12 6 5.0792 1.9278 -3.8487 13 6 4.9880 1.7613 -2.3310 14 1 5.4139 2.6379 -1.8429 15 7 5.7330 0.5666 -1.9259 16 6 7.0610 0.6420 -1.7087 17 8 7.6412 1.7025 -1.8487 18 6 7.8052 -0.5515 -1.3035 19 1 7.2902 -1.4926 -1.1789 20 6 9.1851 -0.4730 -1.0773 21 7 9.8082 0.6654 -1.2285 22 14 10.1347 -1.9960 -0.5594 23 1 10.6243 -2.7085 -1.7669 24 1 11.2910 -1.5960 0.2822 25 1 9.2438 -2.8942 0.2182 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5137 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 1.8933 -0.5138 -0.8901 30 1 1.8933 -0.5139 0.8899 31 1 0.8474 1.7239 1.7101 32 1 2.6039 1.6866 1.9954 33 1 1.1527 3.8539 0.4124 34 1 1.6392 4.0036 2.1180 35 1 2.8777 3.8329 0.8510 36 1 3.9321 0.5221 -0.1082 37 1 3.9130 2.2915 0.0853 38 1 1.8791 0.2740 -2.3138 39 1 3.4780 -0.5080 -2.3045 40 1 2.4607 1.4365 -4.4258 41 1 2.5884 -0.3288 -4.6121 42 1 5.0353 -0.1916 -4.2320 43 1 4.5461 0.8166 -5.6153 44 1 6.1241 2.0341 -4.1402 45 1 4.5251 2.8167 -4.1504 46 1 5.2704 -0.2786 -1.8139 47 1 10.7640 0.7199 -1.0715 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000356940742.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:22 Heat of formation + Delta-G solvation = -57.350756 kcal Electronic energy + Delta-G solvation = -23970.796507 eV Core-core repulsion = 20766.475477 eV Total energy + Delta-G solvation = -3204.321031 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.56965 -37.56348 -36.13076 -32.72870 -32.14637 -31.90412 -31.42722 -29.31900 -28.49047 -26.04318 -24.71501 -23.21706 -21.91337 -21.23417 -20.32590 -20.17533 -18.04542 -17.33461 -15.81870 -15.59871 -15.25887 -15.07388 -14.53138 -14.20674 -14.17702 -13.83486 -13.74530 -13.27240 -12.87211 -12.53061 -12.40741 -12.20687 -12.01373 -11.85281 -11.70292 -11.57747 -11.46607 -11.34582 -11.08086 -11.03136 -10.97231 -10.74623 -10.71599 -10.46629 -10.40816 -10.26616 -10.00076 -9.69053 -9.38540 -8.82064 -8.20961 -7.54079 -7.36301 -6.14468 -4.59727 3.14818 3.21834 3.24736 3.95510 4.13117 4.63595 4.92152 4.95120 5.03797 5.13932 5.19362 5.20528 5.21920 5.37152 5.45690 5.52341 5.56417 5.70452 5.72252 5.79338 5.81062 5.84753 5.89825 5.91434 5.95235 6.01043 6.06439 6.11509 6.15300 6.21050 6.24661 6.29854 6.32907 6.47834 6.59172 6.67122 6.79531 6.86069 6.97470 7.23065 7.24302 7.46274 8.00190 8.21125 8.39612 9.06658 9.62591 10.65078 10.85846 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.015885 B = 0.005001 C = 0.004534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1762.213834 B = 5597.677024 C = 6174.038794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.035 3.965 3 N -0.537 5.537 4 C 0.048 3.952 5 C -0.146 4.146 6 C 0.060 3.940 7 C -0.079 4.079 8 H 0.077 0.923 9 C -0.116 4.116 10 C -0.115 4.115 11 C -0.115 4.115 12 C -0.125 4.125 13 C 0.161 3.839 14 H 0.072 0.928 15 N -0.756 5.756 16 C 0.557 3.443 17 O -0.581 6.581 18 C -0.547 4.547 19 H 0.064 0.936 20 C 0.089 3.911 21 N -0.768 5.768 22 Si 0.904 3.096 23 H -0.273 1.273 24 H -0.280 1.280 25 H -0.266 1.266 26 H 0.054 0.946 27 H 0.050 0.950 28 H 0.061 0.939 29 H 0.088 0.912 30 H 0.030 0.970 31 H 0.069 0.931 32 H 0.032 0.968 33 H 0.061 0.939 34 H 0.053 0.947 35 H 0.055 0.945 36 H 0.048 0.952 37 H 0.069 0.931 38 H 0.070 0.930 39 H 0.057 0.943 40 H 0.056 0.944 41 H 0.053 0.947 42 H 0.066 0.934 43 H 0.049 0.951 44 H 0.067 0.933 45 H 0.052 0.948 46 H 0.376 0.624 47 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.108 -0.674 0.864 17.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.093 4.093 3 N -0.262 5.262 4 C -0.080 4.080 5 C -0.204 4.204 6 C -0.068 4.068 7 C -0.099 4.099 8 H 0.095 0.905 9 C -0.153 4.153 10 C -0.152 4.152 11 C -0.153 4.153 12 C -0.165 4.165 13 C 0.054 3.946 14 H 0.090 0.910 15 N -0.412 5.412 16 C 0.361 3.639 17 O -0.464 6.464 18 C -0.584 4.584 19 H 0.082 0.918 20 C -0.130 4.130 21 N -0.397 5.397 22 Si 0.728 3.272 23 H -0.198 1.198 24 H -0.205 1.205 25 H -0.190 1.190 26 H 0.073 0.927 27 H 0.069 0.931 28 H 0.080 0.920 29 H 0.106 0.894 30 H 0.048 0.952 31 H 0.087 0.913 32 H 0.051 0.949 33 H 0.080 0.920 34 H 0.072 0.928 35 H 0.074 0.926 36 H 0.067 0.933 37 H 0.087 0.913 38 H 0.089 0.911 39 H 0.076 0.924 40 H 0.075 0.925 41 H 0.071 0.929 42 H 0.085 0.915 43 H 0.068 0.932 44 H 0.086 0.914 45 H 0.071 0.929 46 H 0.209 0.791 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -16.768 0.490 0.446 16.782 hybrid contribution 0.806 -1.643 0.910 2.044 sum -15.962 -1.153 1.357 16.061 Atomic orbital electron populations 1.21772 0.95378 1.00975 1.02148 1.22432 0.95763 0.89514 1.01545 1.62049 1.19574 1.16979 1.27563 1.22113 1.00503 0.95394 0.89993 1.21768 1.02474 0.94887 1.01244 1.22182 0.86883 1.01652 0.96058 1.21336 0.95871 0.98834 0.93837 0.90472 1.21751 1.00707 0.97938 0.94917 1.21517 0.96955 1.00752 0.96010 1.21459 0.95362 0.99664 0.98804 1.21871 1.01232 0.96744 0.96610 1.20451 0.89566 0.91285 0.93300 0.91013 1.46190 1.09447 1.09608 1.75937 1.18153 0.79133 0.89733 0.76924 1.90592 1.67930 1.31337 1.56531 1.20887 0.92886 0.95166 1.49491 0.91770 1.25669 0.97853 0.96252 0.93248 1.70020 1.09237 1.24732 1.35748 0.86446 0.79381 0.82310 0.79023 1.19798 1.20525 1.19044 0.92742 0.93083 0.92026 0.89357 0.95205 0.91269 0.94929 0.92004 0.92818 0.92554 0.93325 0.91264 0.91112 0.92421 0.92542 0.92867 0.91503 0.93194 0.91417 0.92893 0.79130 0.92247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 9.99 37.16 0.37 -0.99 16 2 C 0.04 0.39 4.71 -3.83 -0.02 0.38 16 3 N -0.54 -6.65 4.11 -234.62 -0.96 -7.62 16 4 C 0.05 0.55 5.42 -3.82 -0.02 0.53 16 5 C -0.15 -1.58 9.96 37.16 0.37 -1.21 16 6 C 0.06 0.88 4.31 -3.82 -0.02 0.86 16 7 C -0.08 -1.16 2.20 -90.62 -0.20 -1.36 16 8 H 0.08 1.12 8.14 -51.93 -0.42 0.69 16 9 C -0.12 -1.51 3.63 -26.73 -0.10 -1.61 16 10 C -0.11 -1.48 5.92 -26.73 -0.16 -1.64 16 11 C -0.12 -1.78 5.76 -26.73 -0.15 -1.93 16 12 C -0.13 -2.23 5.60 -26.75 -0.15 -2.38 16 13 C 0.16 3.02 2.23 -67.95 -0.15 2.87 16 14 H 0.07 1.56 7.58 -51.93 -0.39 1.17 16 15 N -0.76 -16.29 3.59 -55.23 -0.20 -16.49 16 16 C 0.56 15.51 7.71 -12.99 -0.10 15.41 16 17 O -0.58 -18.53 14.68 5.20 0.08 -18.45 16 18 C -0.55 -15.38 9.54 -35.63 -0.34 -15.72 16 19 H 0.06 1.67 7.85 -52.49 -0.41 1.25 16 20 C 0.09 2.49 5.50 -17.37 -0.10 2.40 16 21 N -0.77 -23.10 11.83 55.55 0.66 -22.44 16 22 Si 0.90 20.26 29.56 -169.99 -5.02 15.24 16 23 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 24 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 25 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 26 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 27 H 0.05 0.46 6.60 -51.93 -0.34 0.12 16 28 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.09 1.01 4.73 -51.92 -0.25 0.76 16 30 H 0.03 0.35 8.04 -51.93 -0.42 -0.07 16 31 H 0.07 0.71 6.32 -51.93 -0.33 0.38 16 32 H 0.03 0.40 8.00 -51.93 -0.42 -0.02 16 33 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.06 0.68 6.98 -51.93 -0.36 0.32 16 36 H 0.05 0.79 7.20 -51.93 -0.37 0.41 16 37 H 0.07 1.10 6.51 -51.93 -0.34 0.77 16 38 H 0.07 0.85 5.74 -51.93 -0.30 0.55 16 39 H 0.06 0.80 6.36 -51.93 -0.33 0.47 16 40 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.07 1.15 7.60 -51.93 -0.39 0.76 16 43 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 44 H 0.07 1.44 8.14 -51.93 -0.42 1.02 16 45 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 46 H 0.38 7.38 6.64 -40.82 -0.27 7.11 16 47 H 0.27 7.31 8.29 -40.82 -0.34 6.97 16 LS Contribution 353.44 15.07 5.33 5.33 Total: -1.00 -32.05 353.44 -9.17 -41.22 By element: Atomic # 1 Polarization: 15.90 SS G_CDS: -8.28 Total: 7.61 kcal Atomic # 6 Polarization: -3.64 SS G_CDS: -0.76 Total: -4.40 kcal Atomic # 7 Polarization: -46.04 SS G_CDS: -0.51 Total: -46.55 kcal Atomic # 8 Polarization: -18.53 SS G_CDS: 0.08 Total: -18.45 kcal Atomic # 14 Polarization: 20.26 SS G_CDS: -5.02 Total: 15.24 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -32.05 -9.17 -41.22 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356940742.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.131 kcal (2) G-P(sol) polarization free energy of solvation -32.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.220 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds