Wall clock time and date at job start Tue Mar 31 2020 05:58:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46495 * 109.46756 * 2 1 4 4 C 1.34777 * 120.00315 * 276.32993 * 3 2 1 5 5 O 1.21591 * 120.00126 * 175.01646 * 4 3 2 6 6 N 1.34783 * 119.99574 * 355.01130 * 4 3 2 7 7 C 1.46496 * 119.99621 * 179.97438 * 6 4 3 8 8 C 1.52999 * 109.46898 * 180.02562 * 7 6 4 9 9 C 1.52995 * 109.47431 * 299.99864 * 8 7 6 10 10 C 1.52997 * 109.47126 * 60.00416 * 8 7 6 11 11 C 1.53005 * 109.46933 * 180.02562 * 8 7 6 12 12 C 1.50701 * 109.46972 * 179.97438 * 11 8 7 13 13 H 1.08003 * 119.99909 * 0.02562 * 12 11 8 14 14 C 1.37876 * 120.00018 * 179.97438 * 12 11 8 15 15 N 1.31511 * 119.99887 * 0.02562 * 14 12 11 16 16 Si 1.86804 * 119.99911 * 180.02562 * 14 12 11 17 17 H 1.48505 * 109.47121 * 60.00186 * 16 14 12 18 18 H 1.48505 * 109.46955 * 179.97438 * 16 14 12 19 19 H 1.48495 * 109.47050 * 299.99971 * 16 14 12 20 20 C 1.46503 * 120.00027 * 96.33145 * 3 2 1 21 21 C 1.53774 * 113.61637 * 43.55678 * 20 3 2 22 22 C 1.53957 * 87.02045 * 220.04939 * 21 20 3 23 23 C 1.53776 * 87.11072 * 25.36252 * 22 21 20 24 24 H 1.09004 * 109.47154 * 304.99933 * 1 2 3 25 25 H 1.08997 * 109.47369 * 65.00286 * 1 2 3 26 26 H 1.09004 * 109.46649 * 185.00890 * 1 2 3 27 27 H 1.08995 * 109.47038 * 240.00274 * 2 1 3 28 28 H 1.09003 * 109.47351 * 119.99996 * 2 1 3 29 29 H 0.96995 * 120.00031 * 0.02562 * 6 4 3 30 30 H 1.09003 * 109.47713 * 300.00596 * 7 6 4 31 31 H 1.09006 * 109.47406 * 60.00490 * 7 6 4 32 32 H 1.09003 * 109.46699 * 59.99991 * 9 8 7 33 33 H 1.08998 * 109.47516 * 179.97438 * 9 8 7 34 34 H 1.08997 * 109.47658 * 300.00555 * 9 8 7 35 35 H 1.09004 * 109.47299 * 59.99982 * 10 8 7 36 36 H 1.08998 * 109.47555 * 179.97438 * 10 8 7 37 37 H 1.09003 * 109.46873 * 299.99929 * 10 8 7 38 38 H 1.08995 * 109.47146 * 299.99980 * 11 8 7 39 39 H 1.08996 * 109.47456 * 60.00420 * 11 8 7 40 40 H 0.97008 * 119.99772 * 180.02562 * 15 14 12 41 41 H 1.09004 * 112.84984 * 174.75636 * 20 3 2 42 42 H 1.09000 * 113.61164 * 334.57062 * 21 20 3 43 43 H 1.09001 * 113.61575 * 105.46948 * 21 20 3 44 44 H 1.08993 * 113.53717 * 270.80798 * 22 21 20 45 45 H 1.09007 * 113.66469 * 139.93463 * 22 21 20 46 46 H 1.08998 * 113.61716 * 220.08911 * 23 22 21 47 47 H 1.09005 * 113.69305 * 89.19905 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1215 2.0595 -1.1601 5 8 2.4397 3.2330 -1.1519 6 7 1.8722 1.4369 -2.3292 7 6 1.9839 2.1743 -3.5901 8 6 1.6506 1.2426 -4.7570 9 6 2.6287 0.0662 -4.7658 10 6 0.2224 0.7173 -4.5983 11 6 1.7679 2.0126 -6.0739 12 6 1.4402 1.0948 -7.2234 13 1 1.1744 0.0653 -7.0335 14 6 1.4786 1.5695 -8.5172 15 7 1.8018 2.8231 -8.7483 16 14 1.0717 0.4319 -9.9420 17 1 -0.3145 -0.0780 -9.7880 18 1 1.1845 1.1795 -11.2201 19 1 2.0211 -0.7100 -9.9504 20 6 2.3943 2.0252 1.2610 21 6 3.2206 1.1220 2.1916 22 6 2.3977 1.7042 3.3552 23 6 1.2877 1.9832 2.3281 24 1 -0.3634 0.5895 0.8419 25 1 -0.3634 0.4342 -0.9314 26 1 -0.3633 -1.0238 0.0897 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 1.6181 0.5008 -2.3356 30 1 1.2868 3.0123 -3.5840 31 1 3.0013 2.5490 -3.7030 32 1 2.5456 -0.4824 -3.8276 33 1 2.3910 -0.5978 -5.5969 34 1 3.6462 0.4404 -4.8789 35 1 -0.4744 1.5555 -4.5920 36 1 -0.0153 0.0539 -5.4298 37 1 0.1393 0.1687 -3.6600 38 1 1.0713 2.8509 -6.0679 39 1 2.7855 2.3865 -6.1869 40 1 1.8285 3.1572 -9.6587 41 1 2.8257 3.0160 1.1181 42 1 3.0532 0.0573 2.0283 43 1 4.2779 1.3844 2.2291 44 1 2.8310 2.6068 3.7859 45 1 2.1207 0.9658 4.1077 46 1 0.7868 2.9400 2.4756 47 1 0.5901 1.1554 2.2013 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358708394.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:35 Heat of formation + Delta-G solvation = -23.350045 kcal Electronic energy + Delta-G solvation = -23338.705264 eV Core-core repulsion = 20135.858615 eV Total energy + Delta-G solvation = -3202.846649 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.57077 -38.61973 -36.97215 -35.12156 -33.32518 -31.93269 -30.51226 -27.14293 -26.49605 -26.40289 -25.98948 -24.70407 -23.53785 -22.61007 -20.20615 -19.12868 -18.80633 -17.45778 -16.86573 -16.27049 -15.48309 -15.41889 -14.83589 -14.41599 -14.04213 -13.99899 -13.85102 -13.42385 -13.08943 -12.91908 -12.77682 -12.70551 -12.32823 -12.10095 -12.05111 -12.01686 -11.32599 -11.18382 -11.12967 -10.98631 -10.86021 -10.74159 -10.61254 -10.55659 -10.36762 -10.24527 -9.89827 -9.84986 -9.17678 -8.91674 -8.84020 -8.38610 -8.34142 -5.98286 -3.99633 2.77103 3.32722 3.38197 3.39041 3.39301 4.08990 4.37220 4.42137 4.46635 4.62129 4.69208 4.72691 5.04307 5.10707 5.37059 5.37324 5.40383 5.47908 5.54863 5.56865 5.62716 5.65998 5.67275 5.76477 5.77795 5.79119 6.00583 6.14805 6.20072 6.25070 6.31161 6.44215 6.56368 6.63740 6.64526 6.84561 7.07927 7.09388 7.10157 7.17725 7.66262 7.79092 8.00389 8.16832 8.42327 8.83048 9.04982 9.63263 11.13163 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.039145 B = 0.003308 C = 0.003194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 715.111680 B = 8463.172186 C = 8764.841972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.103 3.897 3 N -0.623 5.623 4 C 0.702 3.298 5 O -0.594 6.594 6 N -0.736 5.736 7 C 0.145 3.855 8 C -0.072 4.072 9 C -0.125 4.125 10 C -0.125 4.125 11 C 0.037 3.963 12 C -0.511 4.511 13 H 0.059 0.941 14 C 0.056 3.944 15 N -0.895 5.895 16 Si 0.889 3.111 17 H -0.278 1.278 18 H -0.288 1.288 19 H -0.278 1.278 20 C 0.142 3.858 21 C -0.155 4.155 22 C -0.138 4.138 23 C -0.158 4.158 24 H 0.063 0.937 25 H 0.061 0.939 26 H 0.066 0.934 27 H 0.071 0.929 28 H 0.083 0.917 29 H 0.394 0.606 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.026 0.974 33 H 0.066 0.934 34 H 0.047 0.953 35 H 0.047 0.953 36 H 0.066 0.934 37 H 0.027 0.973 38 H 0.018 0.982 39 H 0.018 0.982 40 H 0.260 0.740 41 H 0.119 0.881 42 H 0.085 0.915 43 H 0.071 0.929 44 H 0.082 0.918 45 H 0.070 0.930 46 H 0.070 0.930 47 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.816 -7.320 22.133 23.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.020 4.020 3 N -0.359 5.359 4 C 0.404 3.596 5 O -0.472 6.472 6 N -0.392 5.392 7 C 0.022 3.978 8 C -0.073 4.073 9 C -0.183 4.183 10 C -0.183 4.183 11 C -0.001 4.001 12 C -0.550 4.550 13 H 0.077 0.923 14 C -0.145 4.145 15 N -0.534 5.534 16 Si 0.717 3.283 17 H -0.203 1.203 18 H -0.214 1.214 19 H -0.203 1.203 20 C 0.038 3.962 21 C -0.194 4.194 22 C -0.176 4.176 23 C -0.197 4.197 24 H 0.082 0.918 25 H 0.080 0.920 26 H 0.085 0.915 27 H 0.090 0.910 28 H 0.101 0.899 29 H 0.230 0.770 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.045 0.955 33 H 0.085 0.915 34 H 0.067 0.933 35 H 0.066 0.934 36 H 0.085 0.915 37 H 0.046 0.954 38 H 0.037 0.963 39 H 0.037 0.963 40 H 0.070 0.930 41 H 0.137 0.863 42 H 0.104 0.896 43 H 0.090 0.910 44 H 0.101 0.899 45 H 0.089 0.911 46 H 0.089 0.911 47 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -0.549 -6.312 21.931 22.828 hybrid contribution -0.391 -1.052 -0.908 1.444 sum -0.940 -7.363 21.022 22.294 Atomic orbital electron populations 1.22385 0.95855 1.02278 1.03163 1.21455 0.94487 0.83164 1.02895 1.47137 1.69447 1.13741 1.05576 1.16004 0.78322 0.84799 0.80479 1.90892 1.55452 1.14691 1.86212 1.45527 1.73857 1.14599 1.05235 1.21490 1.01349 0.94450 0.80556 1.20911 0.94865 0.95562 0.95949 1.21745 0.98953 0.97946 0.99617 1.21747 0.96284 1.00701 0.99533 1.19078 0.97464 0.94932 0.88584 1.21147 1.46202 0.96810 0.90814 0.92335 1.25010 0.95575 0.94965 0.98923 1.69957 1.48651 1.14211 1.20566 0.86715 0.78846 0.80840 0.81912 1.20348 1.21405 1.20340 1.22454 0.95456 0.97856 0.80451 1.23501 0.99722 1.00244 0.95935 1.22696 0.97403 1.01297 0.96242 1.23566 0.97483 1.02688 0.95960 0.91794 0.91986 0.91542 0.91036 0.89878 0.76981 0.92069 0.92061 0.95488 0.91479 0.93347 0.93375 0.91491 0.95423 0.96325 0.96319 0.92986 0.86285 0.89650 0.90987 0.89945 0.91097 0.91144 0.89414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.50 10.02 37.16 0.37 -1.13 16 2 C 0.10 0.92 5.18 -4.04 -0.02 0.90 16 3 N -0.62 -7.58 2.70 -170.87 -0.46 -8.04 16 4 C 0.70 11.49 8.22 -86.91 -0.71 10.77 16 5 O -0.59 -12.14 15.82 5.29 0.08 -12.06 16 6 N -0.74 -11.42 4.84 -65.22 -0.32 -11.73 16 7 C 0.15 2.68 4.56 -4.04 -0.02 2.66 16 8 C -0.07 -1.39 0.54 -154.51 -0.08 -1.48 16 9 C -0.13 -2.23 8.05 37.15 0.30 -1.93 16 10 C -0.13 -2.22 8.05 37.16 0.30 -1.92 16 11 C 0.04 0.91 4.04 -27.88 -0.11 0.80 16 12 C -0.51 -13.62 7.65 -34.44 -0.26 -13.88 16 13 H 0.06 1.49 5.68 -52.48 -0.30 1.19 16 14 C 0.06 1.57 5.46 -17.82 -0.10 1.48 16 15 N -0.89 -26.55 13.29 55.43 0.74 -25.81 16 16 Si 0.89 21.23 29.54 -169.99 -5.02 16.21 16 17 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 18 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 19 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 20 C 0.14 1.54 4.22 -67.12 -0.28 1.26 16 21 C -0.16 -1.26 7.58 -25.83 -0.20 -1.45 16 22 C -0.14 -0.97 8.09 -25.83 -0.21 -1.17 16 23 C -0.16 -1.35 7.55 -25.92 -0.20 -1.55 16 24 H 0.06 0.54 5.89 -51.93 -0.31 0.23 16 25 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.07 0.63 6.51 -51.93 -0.34 0.29 16 28 H 0.08 0.58 5.79 -51.93 -0.30 0.28 16 29 H 0.39 5.24 3.94 -40.82 -0.16 5.08 16 30 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 31 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 32 H 0.03 0.39 6.86 -51.93 -0.36 0.03 16 33 H 0.07 1.27 6.62 -51.93 -0.34 0.93 16 34 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 36 H 0.07 1.27 6.62 -51.93 -0.34 0.92 16 37 H 0.03 0.40 6.86 -51.93 -0.36 0.04 16 38 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 39 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 41 H 0.12 1.55 7.20 -51.93 -0.37 1.17 16 42 H 0.09 0.62 5.99 -51.93 -0.31 0.31 16 43 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 44 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 45 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 46 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 47 H 0.09 0.70 5.33 -51.93 -0.28 0.42 16 LS Contribution 356.00 15.07 5.36 5.36 Total: -1.00 -31.35 356.00 -8.81 -40.16 By element: Atomic # 1 Polarization: 10.52 SS G_CDS: -7.97 Total: 2.55 kcal Atomic # 6 Polarization: -5.42 SS G_CDS: -1.22 Total: -6.64 kcal Atomic # 7 Polarization: -45.55 SS G_CDS: -0.04 Total: -45.59 kcal Atomic # 8 Polarization: -12.14 SS G_CDS: 0.08 Total: -12.06 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -31.35 -8.81 -40.16 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358708394.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.814 kcal (2) G-P(sol) polarization free energy of solvation -31.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.164 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds