Wall clock time and date at job start Tue Mar 31 2020 05:28:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.47032 * 2 1 4 4 C 1.52996 * 109.47674 * 120.00411 * 2 1 3 5 5 H 1.09001 * 109.47000 * 300.00133 * 4 2 1 6 6 C 1.52997 * 109.47674 * 179.97438 * 4 2 1 7 7 C 1.50706 * 109.47046 * 59.99501 * 4 2 1 8 8 O 1.21277 * 119.99801 * 0.02562 * 7 4 2 9 9 N 1.34768 * 119.99861 * 180.02562 * 7 4 2 10 10 C 1.46501 * 120.00023 * 180.02562 * 9 7 4 11 11 C 1.52999 * 109.47348 * 180.02562 * 10 9 7 12 12 H 1.08998 * 109.50044 * 55.06185 * 11 10 9 13 13 C 1.53044 * 109.49751 * 175.16153 * 11 10 9 14 14 C 1.53042 * 109.53874 * 181.31210 * 13 11 10 15 15 C 1.53192 * 109.31264 * 298.63862 * 14 13 11 16 16 N 1.46919 * 108.77901 * 54.63153 * 15 14 13 17 17 C 1.36932 * 120.63013 * 126.36910 * 16 15 14 18 18 H 1.08004 * 120.00495 * 331.85017 * 17 16 15 19 19 C 1.38819 * 120.00037 * 151.84993 * 17 16 15 20 20 N 1.31617 * 119.99869 * 343.06931 * 19 17 16 21 21 Si 1.86796 * 120.00174 * 163.07054 * 19 17 16 22 22 H 1.48503 * 109.47237 * 359.97438 * 21 19 17 23 23 H 1.48494 * 109.47417 * 119.99981 * 21 19 17 24 24 H 1.48497 * 109.46953 * 239.99976 * 21 19 17 25 25 C 1.46930 * 118.73770 * 306.39288 * 16 15 14 26 26 H 1.08999 * 109.47461 * 59.99739 * 1 2 3 27 27 H 1.08995 * 109.47479 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47016 * 299.99465 * 1 2 3 29 29 H 1.09001 * 109.47016 * 240.00534 * 2 1 3 30 30 H 1.08999 * 109.47210 * 300.00414 * 3 2 1 31 31 H 1.09001 * 109.46784 * 60.00392 * 3 2 1 32 32 H 1.09004 * 109.47121 * 179.97438 * 3 2 1 33 33 H 1.08999 * 109.47461 * 179.97438 * 6 4 2 34 34 H 1.09001 * 109.47016 * 300.00124 * 6 4 2 35 35 H 1.09004 * 109.47078 * 59.99866 * 6 4 2 36 36 H 0.97002 * 120.00373 * 0.02562 * 9 7 4 37 37 H 1.09007 * 109.46892 * 300.00199 * 10 9 7 38 38 H 1.09000 * 109.47253 * 59.99619 * 10 9 7 39 39 H 1.08996 * 109.46052 * 301.33500 * 13 11 10 40 40 H 1.08998 * 109.45973 * 61.29079 * 13 11 10 41 41 H 1.09001 * 109.49711 * 178.67919 * 14 13 11 42 42 H 1.08997 * 109.52009 * 58.60524 * 14 13 11 43 43 H 1.09001 * 109.58425 * 294.84421 * 15 14 13 44 44 H 1.09002 * 109.70038 * 174.49090 * 15 14 13 45 45 H 0.96996 * 120.00290 * 180.02562 * 20 19 17 46 46 H 1.08994 * 109.58464 * 293.82022 * 25 16 15 47 47 H 1.08999 * 109.58307 * 173.39295 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2491 5 1 1.6768 -0.2075 2.1392 6 6 3.5701 -0.7219 1.2488 7 6 1.5377 -2.1422 1.2491 8 8 0.8407 -2.5388 0.3393 9 7 1.8630 -2.9719 2.2600 10 6 1.3751 -4.3532 2.2598 11 6 1.8840 -5.0742 3.5096 12 1 1.5939 -4.5122 4.3973 13 6 1.2776 -6.4780 3.5721 14 6 1.7604 -7.1881 4.8390 15 6 3.2858 -7.3218 4.7948 16 7 3.8716 -5.9902 4.5890 17 6 4.8283 -5.5094 5.4426 18 1 4.8498 -5.8394 6.4708 19 6 5.7706 -4.5979 4.9864 20 7 5.9661 -4.4447 3.6938 21 14 6.7613 -3.5888 6.2068 22 1 6.3546 -3.9458 7.5898 23 1 8.2074 -3.8739 6.0265 24 1 6.5089 -2.1440 5.9746 25 6 3.4108 -5.1841 3.4503 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.6766 1.9564 -0.8899 31 1 1.6766 1.9563 0.8900 32 1 3.1300 1.4426 0.0005 33 1 3.9335 -1.2353 2.1389 34 1 3.9330 -1.2359 0.3587 35 1 3.9338 0.3057 1.2486 36 1 2.4201 -2.6545 2.9879 37 1 0.2850 -4.3535 2.2591 38 1 1.7390 -4.8670 1.3700 39 1 0.1904 -6.4034 3.5895 40 1 1.5884 -7.0471 2.6960 41 1 1.3097 -8.1790 4.8947 42 1 1.4713 -6.6072 5.7147 43 1 3.5714 -7.9777 3.9723 44 1 3.6456 -7.7379 5.7358 45 1 6.6248 -3.8081 3.3750 46 1 3.7066 -5.6656 2.5183 47 1 3.8512 -4.1885 3.5055 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359428734.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:09 Heat of formation + Delta-G solvation = -48.928296 kcal Electronic energy + Delta-G solvation = -23599.825201 eV Core-core repulsion = 20395.869395 eV Total energy + Delta-G solvation = -3203.955805 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.91501 -37.89345 -36.06815 -34.57903 -33.10584 -31.41030 -30.26073 -29.67985 -27.28085 -25.57559 -25.27539 -23.96218 -22.18181 -21.13585 -20.51216 -19.55777 -18.90309 -17.08328 -16.63626 -15.76418 -15.26796 -14.75912 -14.62830 -14.22368 -14.09652 -13.71627 -13.64357 -13.45487 -12.92468 -12.85004 -12.36389 -12.28213 -12.20455 -12.03494 -11.99848 -11.96111 -11.44559 -11.24096 -11.04679 -10.93726 -10.76995 -10.66768 -10.51186 -10.48761 -10.23652 -10.18281 -9.94041 -9.67085 -9.45011 -9.23166 -8.64694 -8.52064 -6.70491 -5.83685 -3.26324 2.94265 3.31183 3.40659 3.42598 3.54580 4.44391 4.69330 4.87178 4.93227 5.16078 5.27291 5.30849 5.41072 5.46939 5.54300 5.57538 5.57943 5.60721 5.66992 5.80080 5.85036 5.88741 5.93423 5.98462 6.00080 6.11470 6.14218 6.28786 6.29270 6.32105 6.39938 6.41956 6.48288 6.55157 6.64635 6.77193 6.84484 6.87401 6.99736 7.28956 7.58163 7.75070 7.87480 8.39721 8.55811 9.16519 9.79739 10.37498 11.24197 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.014817 B = 0.005324 C = 0.004088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1889.287736 B = 5257.951658 C = 6848.123088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.074 4.074 3 C -0.149 4.149 4 C -0.107 4.107 5 H 0.093 0.907 6 C -0.148 4.148 7 C 0.516 3.484 8 O -0.548 6.548 9 N -0.719 5.719 10 C 0.131 3.869 11 C -0.128 4.128 12 H 0.068 0.932 13 C -0.100 4.100 14 C -0.133 4.133 15 C 0.143 3.857 16 N -0.593 5.593 17 C -0.251 4.251 18 H 0.065 0.935 19 C 0.003 3.997 20 N -0.901 5.901 21 Si 0.898 3.102 22 H -0.278 1.278 23 H -0.290 1.290 24 H -0.289 1.289 25 C 0.180 3.820 26 H 0.047 0.953 27 H 0.083 0.917 28 H 0.044 0.956 29 H 0.075 0.925 30 H 0.054 0.946 31 H 0.053 0.947 32 H 0.058 0.942 33 H 0.067 0.933 34 H 0.061 0.939 35 H 0.066 0.934 36 H 0.404 0.596 37 H 0.056 0.944 38 H 0.063 0.937 39 H 0.047 0.953 40 H 0.056 0.944 41 H 0.050 0.950 42 H 0.057 0.943 43 H 0.017 0.983 44 H 0.052 0.948 45 H 0.253 0.747 46 H 0.018 0.982 47 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.771 6.797 -3.669 11.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.093 4.093 3 C -0.207 4.207 4 C -0.128 4.128 5 H 0.111 0.889 6 C -0.205 4.205 7 C 0.303 3.697 8 O -0.427 6.427 9 N -0.370 5.370 10 C 0.007 3.993 11 C -0.148 4.148 12 H 0.087 0.913 13 C -0.138 4.138 14 C -0.172 4.172 15 C 0.017 3.983 16 N -0.315 5.315 17 C -0.381 4.381 18 H 0.083 0.917 19 C -0.196 4.196 20 N -0.545 5.545 21 Si 0.728 3.272 22 H -0.203 1.203 23 H -0.217 1.217 24 H -0.215 1.215 25 C 0.054 3.946 26 H 0.066 0.934 27 H 0.102 0.898 28 H 0.063 0.937 29 H 0.093 0.907 30 H 0.073 0.927 31 H 0.072 0.928 32 H 0.077 0.923 33 H 0.086 0.914 34 H 0.080 0.920 35 H 0.085 0.915 36 H 0.240 0.760 37 H 0.075 0.925 38 H 0.081 0.919 39 H 0.065 0.935 40 H 0.075 0.925 41 H 0.069 0.931 42 H 0.075 0.925 43 H 0.035 0.965 44 H 0.071 0.929 45 H 0.063 0.937 46 H 0.036 0.964 47 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -9.126 6.589 -4.369 12.074 hybrid contribution 0.885 0.670 0.965 1.471 sum -8.240 7.259 -3.405 11.497 Atomic orbital electron populations 1.22069 0.94953 1.04032 1.00493 1.20875 0.96301 0.95139 0.97008 1.21929 1.01228 0.95911 1.01585 1.21386 0.97703 0.93102 1.00650 0.88927 1.21849 0.92626 1.02700 1.03359 1.20586 0.79881 0.87626 0.81649 1.90584 1.38602 1.77465 1.36035 1.46094 1.53140 1.12480 1.25252 1.21363 0.97811 0.81018 0.99148 1.22139 1.01262 0.95498 0.95947 0.91315 1.21332 0.98326 0.95727 0.98441 1.21986 0.98933 0.98778 0.97497 1.20931 0.90612 0.88257 0.98535 1.44047 1.43962 1.12255 1.31255 1.19244 1.05315 1.22527 0.91030 0.91681 1.25031 0.96961 1.01955 0.95631 1.70050 1.35549 1.37216 1.11731 0.86281 0.79823 0.80142 0.80917 1.20281 1.21718 1.21539 1.20794 0.86617 0.98000 0.89222 0.93360 0.89798 0.93719 0.90666 0.92720 0.92812 0.92291 0.91424 0.91995 0.91461 0.76023 0.92523 0.91869 0.93457 0.92506 0.93092 0.92453 0.96525 0.92922 0.93701 0.96385 0.89441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.93 8.87 37.16 0.33 -1.60 16 2 C -0.07 -0.89 2.15 -90.62 -0.19 -1.08 16 3 C -0.15 -1.44 8.84 37.16 0.33 -1.11 16 4 C -0.11 -1.36 2.32 -91.77 -0.21 -1.57 16 5 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 6 C -0.15 -1.85 8.74 37.16 0.32 -1.52 16 7 C 0.52 8.16 6.86 -10.99 -0.08 8.08 16 8 O -0.55 -10.09 13.66 5.56 0.08 -10.02 16 9 N -0.72 -11.43 5.22 -60.29 -0.31 -11.75 16 10 C 0.13 2.17 5.07 -4.04 -0.02 2.15 16 11 C -0.13 -2.28 2.38 -90.50 -0.22 -2.50 16 12 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 13 C -0.10 -1.64 5.17 -26.69 -0.14 -1.78 16 14 C -0.13 -2.25 6.08 -26.61 -0.16 -2.41 16 15 C 0.14 2.95 6.52 -3.71 -0.02 2.92 16 16 N -0.59 -14.36 2.99 -172.32 -0.52 -14.87 16 17 C -0.25 -6.67 9.58 -15.06 -0.14 -6.82 16 18 H 0.07 1.72 7.89 -52.48 -0.41 1.30 16 19 C 0.00 0.07 4.92 -17.43 -0.09 -0.01 16 20 N -0.90 -24.92 11.20 55.49 0.62 -24.30 16 21 Si 0.90 20.83 29.59 -169.99 -5.03 15.80 16 22 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 23 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 24 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 25 C 0.18 4.03 4.39 -3.71 -0.02 4.01 16 26 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 27 H 0.08 1.23 5.51 -51.93 -0.29 0.95 16 28 H 0.04 0.50 8.14 -51.93 -0.42 0.07 16 29 H 0.07 1.00 8.10 -51.93 -0.42 0.58 16 30 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.06 0.54 6.43 -51.93 -0.33 0.21 16 33 H 0.07 0.92 7.57 -51.93 -0.39 0.53 16 34 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.07 0.71 6.43 -51.93 -0.33 0.38 16 36 H 0.40 6.30 7.12 -40.82 -0.29 6.01 16 37 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 39 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 41 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 43 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 44 H 0.05 1.06 7.93 -51.93 -0.41 0.65 16 45 H 0.25 6.77 8.31 -40.82 -0.34 6.43 16 46 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 47 H 0.09 2.12 5.26 -51.93 -0.27 1.85 16 LS Contribution 358.51 15.07 5.40 5.40 Total: -1.00 -29.08 358.51 -8.70 -37.78 By element: Atomic # 1 Polarization: 13.83 SS G_CDS: -8.63 Total: 5.19 kcal Atomic # 6 Polarization: -2.94 SS G_CDS: -0.31 Total: -3.24 kcal Atomic # 7 Polarization: -50.71 SS G_CDS: -0.21 Total: -50.92 kcal Atomic # 8 Polarization: -10.09 SS G_CDS: 0.08 Total: -10.02 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.03 Total: 15.80 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -29.08 -8.70 -37.78 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359428734.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.145 kcal (2) G-P(sol) polarization free energy of solvation -29.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.783 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds