Wall clock time and date at job start Tue Mar 31 2020 05:47:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09008 * 109.46939 * 2 1 4 4 C 1.52996 * 109.47238 * 239.99819 * 2 1 3 5 5 N 1.46498 * 109.47059 * 64.99625 * 4 2 1 6 6 C 1.34777 * 119.99828 * 179.72339 * 5 4 2 7 7 O 1.21283 * 120.00222 * 0.28168 * 6 5 4 8 8 C 1.50703 * 120.00290 * 180.27728 * 6 5 4 9 9 C 1.52990 * 109.47398 * 180.02562 * 8 6 5 10 10 C 1.50703 * 109.47398 * 180.02562 * 9 8 6 11 11 H 1.08001 * 119.99463 * 359.97438 * 10 9 8 12 12 C 1.37871 * 120.00445 * 180.02562 * 10 9 8 13 13 N 1.31524 * 120.00004 * 359.97438 * 12 10 9 14 14 Si 1.86798 * 120.00395 * 179.97438 * 12 10 9 15 15 H 1.48508 * 109.46744 * 89.99968 * 14 12 10 16 16 H 1.48501 * 109.47447 * 209.99968 * 14 12 10 17 17 H 1.48499 * 109.46902 * 330.00308 * 14 12 10 18 18 C 1.53003 * 109.47108 * 119.99256 * 2 1 3 19 19 N 1.46895 * 109.47451 * 295.00197 * 18 2 1 20 20 C 1.46844 * 110.99883 * 294.20932 * 19 18 2 21 21 C 1.53036 * 109.52181 * 174.16101 * 20 19 18 22 22 C 1.53125 * 109.27954 * 59.18079 * 21 20 19 23 23 C 1.53122 * 109.15553 * 302.34395 * 22 21 20 24 24 C 1.46845 * 110.99996 * 169.99707 * 19 18 2 25 25 H 1.09001 * 109.46786 * 300.00471 * 1 2 3 26 26 H 1.09001 * 109.47309 * 60.00201 * 1 2 3 27 27 H 1.08995 * 109.46988 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47066 * 304.99893 * 4 2 1 29 29 H 1.08994 * 109.46974 * 185.00040 * 4 2 1 30 30 H 0.97001 * 120.00384 * 0.02562 * 5 4 2 31 31 H 1.08998 * 109.46954 * 300.00581 * 8 6 5 32 32 H 1.09002 * 109.46946 * 59.99717 * 8 6 5 33 33 H 1.08998 * 109.47508 * 300.00200 * 9 8 6 34 34 H 1.09011 * 109.47182 * 60.00188 * 9 8 6 35 35 H 0.96991 * 119.99897 * 179.97438 * 13 12 10 36 36 H 1.08998 * 109.46886 * 55.00501 * 18 2 1 37 37 H 1.09002 * 109.46923 * 174.99751 * 18 2 1 38 38 H 1.08996 * 109.46570 * 294.17604 * 20 19 18 39 39 H 1.09002 * 109.46526 * 54.14754 * 20 19 18 40 40 H 1.08999 * 109.50548 * 299.23329 * 21 20 19 41 41 H 1.09001 * 109.50187 * 179.11928 * 21 20 19 42 42 H 1.09000 * 109.52230 * 182.44096 * 22 21 20 43 43 H 1.08996 * 109.52491 * 62.24991 * 22 21 20 44 44 H 1.09000 * 109.50602 * 297.71124 * 23 22 21 45 45 H 1.09004 * 109.49658 * 177.59845 * 23 22 21 46 46 H 1.09001 * 109.46449 * 305.85825 * 24 19 18 47 47 H 1.09005 * 109.46396 * 65.82520 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 1.6524 0.0353 -2.4423 6 6 2.0008 -0.4106 -3.6656 7 8 2.6308 -1.4407 -3.7789 8 6 1.6075 0.3708 -4.8927 9 6 2.1217 -0.3478 -6.1415 10 6 1.7290 0.4339 -7.3686 11 1 1.1682 1.3514 -7.2677 12 6 2.0845 -0.0226 -8.6200 13 7 2.7670 -1.1402 -8.7429 14 14 1.5970 0.9460 -10.1410 15 1 2.6648 1.9252 -10.4675 16 1 1.4132 0.0148 -11.2831 17 1 0.3257 1.6682 -9.8815 18 6 2.0400 -0.7211 1.2494 19 7 1.6514 0.0376 2.4457 20 6 2.3292 1.3396 2.4862 21 6 1.7932 2.1588 3.6625 22 6 2.0395 1.3933 4.9656 23 6 1.3639 0.0220 4.8782 24 6 1.9123 -0.7352 3.6667 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 1.6054 -1.7199 -1.2950 29 1 3.1263 -0.7995 -1.2055 30 1 1.1488 0.8593 -2.3518 31 1 0.5214 0.4497 -4.9405 32 1 2.0423 1.3691 -4.8425 33 1 3.2078 -0.4271 -6.0939 34 1 1.6865 -1.3460 -6.1915 35 1 3.0168 -1.4616 -9.6233 36 1 1.6054 -1.7197 1.2953 37 1 3.1263 -0.7993 1.2057 38 1 3.4015 1.1872 2.6086 39 1 2.1425 1.8755 1.5555 40 1 0.7234 2.3235 3.5338 41 1 2.3076 3.1190 3.7017 42 1 1.6205 1.9532 5.8017 43 1 3.1114 1.2626 5.1142 44 1 0.2873 0.1530 4.7687 45 1 1.5716 -0.5444 5.7861 46 1 1.4230 -1.7064 3.5934 47 1 2.9867 -0.8779 3.7836 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360032963.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:13 Heat of formation + Delta-G solvation = -91.091658 kcal Electronic energy + Delta-G solvation = -22039.483356 eV Core-core repulsion = 18833.699210 eV Total energy + Delta-G solvation = -3205.784146 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.80327 -40.03694 -37.44528 -35.55760 -34.85394 -33.14735 -32.41294 -31.67378 -28.35214 -27.52577 -26.46238 -24.22078 -23.89933 -23.11817 -21.47846 -20.72757 -20.47657 -18.79029 -17.59027 -17.39714 -16.74620 -16.55752 -16.28641 -16.10659 -15.70984 -15.32569 -15.15199 -14.77166 -14.43871 -14.29910 -14.19394 -14.03178 -13.73750 -13.38658 -13.23298 -13.21533 -12.81871 -12.75175 -12.47327 -12.11517 -12.07377 -11.98895 -11.90615 -11.76826 -11.62426 -11.54239 -11.30043 -11.23949 -11.10890 -10.70266 -10.56578 -10.04653 -9.25308 -8.17489 -6.31649 1.42446 1.45446 1.56414 1.73519 2.24369 2.45169 2.95289 3.15295 3.77251 3.86104 3.94659 3.97194 4.06891 4.11768 4.14933 4.33433 4.43138 4.50897 4.52796 4.53385 4.58366 4.65255 4.71444 4.73713 4.82657 4.84944 4.97292 4.97728 5.08019 5.08580 5.10246 5.16069 5.26156 5.30482 5.31891 5.45808 5.49717 5.50681 5.55950 5.64011 5.86227 6.12959 6.18279 6.18635 6.63472 6.87061 7.36692 7.39061 8.95240 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.046763 B = 0.002309 C = 0.002261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 598.623146 B =12120.995957 C =12382.311064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.084 4.084 3 H 0.087 0.913 4 C 0.124 3.876 5 N -0.715 5.715 6 C 0.510 3.490 7 O -0.592 6.592 8 C -0.119 4.119 9 C 0.041 3.959 10 C -0.542 4.542 11 H 0.077 0.923 12 C -0.009 4.009 13 N -0.938 5.938 14 Si 0.976 3.024 15 H -0.271 1.271 16 H -0.286 1.286 17 H -0.255 1.255 18 C 0.065 3.935 19 N -0.535 5.535 20 C 0.048 3.952 21 C -0.114 4.114 22 C -0.122 4.122 23 C -0.113 4.113 24 C 0.053 3.947 25 H 0.072 0.928 26 H 0.054 0.946 27 H 0.047 0.953 28 H 0.053 0.947 29 H 0.050 0.950 30 H 0.415 0.585 31 H 0.105 0.895 32 H 0.105 0.895 33 H -0.019 1.019 34 H -0.019 1.019 35 H 0.263 0.737 36 H 0.078 0.922 37 H 0.031 0.969 38 H 0.025 0.975 39 H 0.079 0.921 40 H 0.068 0.932 41 H 0.073 0.927 42 H 0.071 0.929 43 H 0.055 0.945 44 H 0.067 0.933 45 H 0.075 0.925 46 H 0.076 0.924 47 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.015 7.833 29.960 31.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.103 4.103 3 H 0.105 0.895 4 C 0.000 4.000 5 N -0.369 5.369 6 C 0.298 3.702 7 O -0.472 6.472 8 C -0.159 4.159 9 C 0.004 3.996 10 C -0.580 4.580 11 H 0.095 0.905 12 C -0.207 4.207 13 N -0.578 5.578 14 Si 0.799 3.201 15 H -0.197 1.197 16 H -0.212 1.212 17 H -0.178 1.178 18 C -0.064 4.064 19 N -0.260 5.260 20 C -0.079 4.079 21 C -0.152 4.152 22 C -0.160 4.160 23 C -0.151 4.151 24 C -0.075 4.075 25 H 0.091 0.909 26 H 0.073 0.927 27 H 0.066 0.934 28 H 0.071 0.929 29 H 0.068 0.932 30 H 0.253 0.747 31 H 0.123 0.877 32 H 0.123 0.877 33 H 0.000 1.000 34 H 0.000 1.000 35 H 0.071 0.929 36 H 0.097 0.903 37 H 0.049 0.951 38 H 0.044 0.956 39 H 0.097 0.903 40 H 0.087 0.913 41 H 0.092 0.908 42 H 0.090 0.910 43 H 0.074 0.926 44 H 0.086 0.914 45 H 0.093 0.907 46 H 0.094 0.906 47 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -5.005 7.075 29.773 31.009 hybrid contribution 0.946 -0.080 -0.974 1.361 sum -4.059 6.995 28.799 29.913 Atomic orbital electron populations 1.21684 0.93262 1.01860 1.02215 1.21253 0.97689 0.99962 0.91405 0.89525 1.21329 0.99090 0.95390 0.84202 1.45880 1.57945 1.28372 1.04704 1.21346 0.77868 0.85068 0.85921 1.90653 1.42006 1.27054 1.87516 1.21635 1.03372 0.99961 0.90943 1.18693 0.94388 0.94416 0.92137 1.21726 1.35438 1.09097 0.91768 0.90514 1.26173 0.94998 0.96125 1.03374 1.70186 1.39960 1.23216 1.24479 0.85296 0.79270 0.78035 0.77476 1.19688 1.21226 1.17845 1.21988 0.97770 0.97444 0.89198 1.61895 1.58457 1.03909 1.01739 1.22213 0.95310 0.90457 0.99957 1.21569 1.01866 0.98078 0.93680 1.21593 1.00324 0.96236 0.97807 1.21563 1.00734 0.96018 0.96783 1.22136 0.98429 0.97132 0.89813 0.90858 0.92721 0.93434 0.92851 0.93172 0.74720 0.87723 0.87715 1.00045 1.00013 0.92880 0.90326 0.95087 0.95646 0.90259 0.91333 0.90836 0.90995 0.92586 0.91413 0.90653 0.90560 0.95443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.11 8.95 71.98 0.64 -1.47 16 2 C -0.08 -1.41 2.35 -10.79 -0.03 -1.43 16 3 H 0.09 1.33 6.22 -2.38 -0.01 1.32 16 4 C 0.12 3.03 5.06 86.38 0.44 3.47 16 5 N -0.72 -19.39 5.28 -463.07 -2.45 -21.84 16 6 C 0.51 20.06 7.83 87.66 0.69 20.74 16 7 O -0.59 -29.82 15.98 -3.04 -0.05 -29.87 16 8 C -0.12 -4.84 5.64 29.85 0.17 -4.67 16 9 C 0.04 2.34 4.26 29.85 0.13 2.47 16 10 C -0.54 -31.19 9.11 25.60 0.23 -30.96 16 11 H 0.08 4.00 7.74 -2.91 -0.02 3.97 16 12 C -0.01 -0.56 5.46 84.65 0.46 -0.09 16 13 N -0.94 -60.23 13.29 21.45 0.28 -59.95 16 14 Si 0.98 44.64 29.54 68.60 2.03 46.66 16 15 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 16 H -0.29 -13.00 7.11 99.48 0.71 -12.29 16 17 H -0.25 -10.78 7.11 99.48 0.71 -10.08 16 18 C 0.06 1.04 4.35 86.31 0.38 1.41 16 19 N -0.54 -7.82 4.11 -896.39 -3.68 -11.50 16 20 C 0.05 0.66 5.30 86.33 0.46 1.11 16 21 C -0.11 -1.28 6.09 30.65 0.19 -1.09 16 22 C -0.12 -1.26 6.00 30.68 0.18 -1.07 16 23 C -0.11 -1.22 6.09 30.65 0.19 -1.03 16 24 C 0.05 0.69 5.46 86.32 0.47 1.16 16 25 H 0.07 1.12 7.75 -2.39 -0.02 1.10 16 26 H 0.05 0.84 7.18 -2.39 -0.02 0.82 16 27 H 0.05 0.82 8.14 -2.39 -0.02 0.81 16 28 H 0.05 1.45 8.14 -2.38 -0.02 1.43 16 29 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 30 H 0.42 8.26 7.66 -92.71 -0.71 7.55 16 31 H 0.10 3.71 8.14 -2.39 -0.02 3.69 16 32 H 0.10 3.70 8.14 -2.39 -0.02 3.69 16 33 H -0.02 -1.21 8.10 -2.39 -0.02 -1.23 16 34 H -0.02 -1.19 8.10 -2.38 -0.02 -1.21 16 35 H 0.26 15.76 8.31 -92.71 -0.77 14.98 16 36 H 0.08 1.27 7.99 -2.39 -0.02 1.25 16 37 H 0.03 0.54 8.12 -2.39 -0.02 0.52 16 38 H 0.03 0.38 8.14 -2.39 -0.02 0.36 16 39 H 0.08 1.06 6.12 -2.39 -0.01 1.04 16 40 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 41 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 42 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 43 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 44 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 45 H 0.07 0.66 8.14 -2.38 -0.02 0.64 16 46 H 0.08 0.97 8.02 -2.39 -0.02 0.95 16 47 H 0.03 0.38 8.14 -2.38 -0.02 0.36 16 Total: -1.00 -75.67 368.63 0.93 -74.74 By element: Atomic # 1 Polarization: 13.01 SS G_CDS: 0.20 Total: 13.21 kcal Atomic # 6 Polarization: -16.05 SS G_CDS: 4.60 Total: -11.46 kcal Atomic # 7 Polarization: -87.44 SS G_CDS: -5.85 Total: -93.29 kcal Atomic # 8 Polarization: -29.82 SS G_CDS: -0.05 Total: -29.87 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 2.03 Total: 46.66 kcal Total: -75.67 0.93 -74.74 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360032963.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.350 kcal (2) G-P(sol) polarization free energy of solvation -75.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds