Wall clock time and date at job start Tue Mar 31 2020 05:47:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47325 * 2 1 4 4 C 1.52998 * 109.46976 * 120.00048 * 2 1 3 5 5 N 1.46498 * 109.47021 * 294.99808 * 4 2 1 6 6 C 1.34776 * 120.00043 * 180.02562 * 5 4 2 7 7 O 1.21281 * 120.00165 * 359.97438 * 6 5 4 8 8 C 1.50705 * 120.00177 * 180.02562 * 6 5 4 9 9 C 1.52998 * 109.47155 * 179.97438 * 8 6 5 10 10 C 1.50705 * 109.47155 * 180.02562 * 9 8 6 11 11 H 1.08001 * 119.99531 * 359.97438 * 10 9 8 12 12 C 1.37875 * 120.00004 * 180.02562 * 10 9 8 13 13 N 1.31514 * 119.99965 * 0.02562 * 12 10 9 14 14 Si 1.86797 * 119.99804 * 179.97438 * 12 10 9 15 15 H 1.48498 * 109.47223 * 359.97438 * 14 12 10 16 16 H 1.48506 * 109.46951 * 120.00325 * 14 12 10 17 17 H 1.48505 * 109.47143 * 239.99969 * 14 12 10 18 18 C 1.52995 * 109.47070 * 239.99880 * 2 1 3 19 19 N 1.46903 * 109.47212 * 175.90318 * 18 2 1 20 20 C 1.46849 * 110.99851 * 288.28847 * 19 18 2 21 21 C 1.53035 * 109.52318 * 174.15821 * 20 19 18 22 22 C 1.53123 * 109.27743 * 59.18213 * 21 20 19 23 23 C 1.53116 * 109.15713 * 302.34469 * 22 21 20 24 24 C 1.46846 * 111.00048 * 164.08291 * 19 18 2 25 25 H 1.09000 * 109.47349 * 305.03040 * 1 2 3 26 26 H 1.09004 * 109.47340 * 65.02629 * 1 2 3 27 27 H 1.08993 * 109.47156 * 185.02710 * 1 2 3 28 28 H 1.08996 * 109.47636 * 55.00156 * 4 2 1 29 29 H 1.09007 * 109.47300 * 175.00053 * 4 2 1 30 30 H 0.97002 * 120.00284 * 0.02562 * 5 4 2 31 31 H 1.09004 * 109.47002 * 299.99960 * 8 6 5 32 32 H 1.09007 * 109.46910 * 59.99542 * 8 6 5 33 33 H 1.09004 * 109.47418 * 300.00054 * 9 8 6 34 34 H 1.09007 * 109.47300 * 60.00131 * 9 8 6 35 35 H 0.97002 * 119.99740 * 180.02562 * 13 12 10 36 36 H 1.09007 * 109.47426 * 55.90551 * 18 2 1 37 37 H 1.08993 * 109.47528 * 295.90193 * 18 2 1 38 38 H 1.08998 * 109.46589 * 294.17514 * 20 19 18 39 39 H 1.09006 * 109.46136 * 54.14299 * 20 19 18 40 40 H 1.08999 * 109.50679 * 299.24055 * 21 20 19 41 41 H 1.09000 * 109.50312 * 179.12102 * 21 20 19 42 42 H 1.09002 * 109.51775 * 182.43653 * 22 21 20 43 43 H 1.08996 * 109.57087 * 62.28486 * 22 21 20 44 44 H 1.08996 * 109.50145 * 297.70896 * 23 22 21 45 45 H 1.09007 * 109.49833 * 177.59889 * 23 22 21 46 46 H 1.08998 * 109.46184 * 305.85195 * 24 19 18 47 47 H 1.08992 * 109.46568 * 65.82413 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 1.2492 5 7 1.6524 0.0354 2.4423 6 6 1.9963 -0.4130 3.6659 7 8 2.6263 -1.4432 3.7793 8 6 1.5972 0.3650 4.8933 9 6 2.1073 -0.3562 6.1425 10 6 1.7075 0.4215 7.3699 11 1 1.1462 1.3387 7.2690 12 6 2.0593 -0.0373 8.6216 13 7 2.7442 -1.1533 8.7444 14 14 1.5645 0.9271 10.1429 15 1 0.8073 2.1382 9.7367 16 1 0.7111 0.0773 11.0118 17 1 2.7823 1.3327 10.8898 18 6 2.0399 -0.7213 -1.2492 19 7 3.5056 -0.6362 -1.2997 20 6 3.9427 0.7272 -1.6265 21 6 5.4674 0.8130 -1.5277 22 6 6.0943 -0.1907 -2.4995 23 6 5.5852 -1.5962 -2.1679 24 6 4.0571 -1.6122 -2.2482 25 1 -0.3634 0.5899 0.8415 26 1 -0.3634 0.4339 -0.9316 27 1 -0.3633 -1.0236 0.0900 28 1 1.6054 -1.7198 1.2952 29 1 3.1263 -0.7995 1.2056 30 1 1.1482 0.8591 2.3517 31 1 2.0311 1.3639 4.8473 32 1 0.5107 0.4425 4.9370 33 1 1.6730 -1.3550 6.1883 34 1 3.1937 -0.4340 6.0991 35 1 2.9913 -1.4763 9.6250 36 1 1.6179 -0.2516 -2.1377 37 1 1.7379 -1.7679 -1.2133 38 1 3.6299 0.9755 -2.6407 39 1 3.4931 1.4305 -0.9255 40 1 5.7800 0.5782 -0.5102 41 1 5.7926 1.8209 -1.7855 42 1 7.1795 -0.1636 -2.4013 43 1 5.8145 0.0666 -3.5210 44 1 5.8997 -1.8688 -1.1606 45 1 5.9948 -2.3096 -2.8832 46 1 3.6907 -2.6080 -1.9988 47 1 3.7438 -1.3529 -3.2595 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360032964.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:16 Heat of formation + Delta-G solvation = -68.979895 kcal Electronic energy + Delta-G solvation = -22391.998809 eV Core-core repulsion = 19187.173501 eV Total energy + Delta-G solvation = -3204.825308 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.62039 -38.85972 -36.39738 -33.70688 -33.36746 -31.92165 -31.07260 -30.78103 -26.90759 -26.47101 -24.89158 -23.44407 -23.05325 -21.41536 -20.32642 -19.92102 -19.30695 -16.79254 -16.52304 -16.01916 -15.55632 -15.17064 -15.01806 -14.70448 -14.48495 -14.25885 -14.13980 -13.82030 -13.54308 -13.12202 -12.89632 -12.76863 -12.56513 -12.15266 -12.04262 -12.00394 -11.49423 -11.40045 -11.14714 -11.08107 -11.02080 -10.89973 -10.88008 -10.60820 -10.53372 -10.41193 -9.88676 -9.58881 -9.08633 -8.90414 -8.63677 -8.46498 -8.27083 -5.91398 -3.95432 3.35457 3.41795 3.42260 3.45736 3.59171 3.73008 4.49876 4.52200 4.54324 4.61406 4.71272 4.79341 4.96952 4.99030 5.12391 5.19279 5.25130 5.34529 5.37466 5.39758 5.43425 5.51036 5.59821 5.60516 5.68201 5.71056 5.72399 5.82970 5.91057 5.93318 5.93981 6.13884 6.18132 6.28358 6.32734 6.35359 6.85176 6.86762 6.92600 6.98693 7.80455 7.93836 8.05197 8.13601 8.44939 8.93957 9.14176 9.67772 11.19631 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.024741 B = 0.002826 C = 0.002689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1131.459377 B = 9905.517300 C =10411.807255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.098 4.098 3 H 0.075 0.925 4 C 0.131 3.869 5 N -0.745 5.745 6 C 0.508 3.492 7 O -0.536 6.536 8 C -0.130 4.130 9 C 0.037 3.963 10 C -0.525 4.525 11 H 0.056 0.944 12 C 0.057 3.943 13 N -0.890 5.890 14 Si 0.892 3.108 15 H -0.273 1.273 16 H -0.284 1.284 17 H -0.284 1.284 18 C 0.064 3.936 19 N -0.536 5.536 20 C 0.055 3.945 21 C -0.119 4.119 22 C -0.121 4.121 23 C -0.119 4.119 24 C 0.057 3.943 25 H 0.060 0.940 26 H 0.053 0.947 27 H 0.058 0.942 28 H 0.057 0.943 29 H 0.077 0.923 30 H 0.393 0.607 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.023 0.977 34 H 0.023 0.977 35 H 0.260 0.740 36 H 0.037 0.963 37 H 0.077 0.923 38 H 0.029 0.971 39 H 0.076 0.924 40 H 0.074 0.926 41 H 0.064 0.936 42 H 0.063 0.937 43 H 0.055 0.945 44 H 0.074 0.926 45 H 0.064 0.936 46 H 0.075 0.925 47 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.069 3.975 -26.963 27.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.118 4.118 3 H 0.094 0.906 4 C 0.008 3.992 5 N -0.399 5.399 6 C 0.296 3.704 7 O -0.411 6.411 8 C -0.170 4.170 9 C -0.001 4.001 10 C -0.563 4.563 11 H 0.074 0.926 12 C -0.145 4.145 13 N -0.529 5.529 14 Si 0.720 3.280 15 H -0.198 1.198 16 H -0.210 1.210 17 H -0.210 1.210 18 C -0.064 4.064 19 N -0.261 5.261 20 C -0.073 4.073 21 C -0.157 4.157 22 C -0.158 4.158 23 C -0.156 4.156 24 C -0.070 4.070 25 H 0.079 0.921 26 H 0.072 0.928 27 H 0.077 0.923 28 H 0.075 0.925 29 H 0.095 0.905 30 H 0.227 0.773 31 H 0.096 0.904 32 H 0.095 0.905 33 H 0.041 0.959 34 H 0.042 0.958 35 H 0.069 0.931 36 H 0.055 0.945 37 H 0.095 0.905 38 H 0.047 0.953 39 H 0.095 0.905 40 H 0.092 0.908 41 H 0.083 0.917 42 H 0.081 0.919 43 H 0.074 0.926 44 H 0.093 0.907 45 H 0.083 0.917 46 H 0.093 0.907 47 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 0.805 2.965 -26.285 26.464 hybrid contribution -0.830 1.086 -0.038 1.367 sum -0.026 4.050 -26.323 26.633 Atomic orbital electron populations 1.21840 0.94607 1.02462 1.01711 1.21377 0.95601 1.00179 0.94597 0.90622 1.21219 1.00980 0.94476 0.82570 1.46239 1.59501 1.27983 1.06164 1.21488 0.78414 0.85916 0.84591 1.90665 1.39145 1.24656 1.86667 1.21851 1.01781 0.99789 0.93600 1.18896 0.97182 0.95517 0.88500 1.21278 1.35339 1.08519 0.91207 0.92605 1.25032 0.95246 0.95084 0.99109 1.70015 1.38471 1.21077 1.23289 0.86546 0.78233 0.80011 0.83223 1.19777 1.21047 1.21047 1.22088 0.86995 1.01123 0.96240 1.61859 1.08876 1.05117 1.50229 1.22122 0.96097 0.90174 0.98859 1.21596 0.94443 0.98843 1.00797 1.21569 1.00160 0.95268 0.98830 1.21596 0.94605 0.96828 1.02619 1.22072 0.95477 0.96161 0.93334 0.92079 0.92769 0.92289 0.92497 0.90455 0.77340 0.90437 0.90456 0.95865 0.95833 0.93053 0.94471 0.90476 0.95257 0.90532 0.90752 0.91692 0.91856 0.92586 0.90746 0.91700 0.90687 0.95254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.21 9.01 37.16 0.33 -0.88 16 2 C -0.10 -0.91 2.43 -90.62 -0.22 -1.13 16 3 H 0.08 0.68 6.51 -51.93 -0.34 0.34 16 4 C 0.13 1.74 5.01 -4.04 -0.02 1.72 16 5 N -0.74 -10.94 5.32 -60.29 -0.32 -11.26 16 6 C 0.51 10.23 7.83 -10.98 -0.09 10.14 16 7 O -0.54 -13.28 15.98 5.56 0.09 -13.19 16 8 C -0.13 -2.74 5.64 -27.88 -0.16 -2.89 16 9 C 0.04 1.01 4.26 -27.88 -0.12 0.89 16 10 C -0.53 -15.20 9.11 -34.44 -0.31 -15.52 16 11 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 12 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 13 N -0.89 -27.90 13.29 55.43 0.74 -27.16 16 14 Si 0.89 21.97 29.54 -169.99 -5.02 16.95 16 15 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 16 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 17 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 18 C 0.06 0.55 4.38 -3.82 -0.02 0.53 16 19 N -0.54 -5.04 3.94 -234.67 -0.93 -5.97 16 20 C 0.06 0.47 5.30 -3.83 -0.02 0.45 16 21 C -0.12 -0.99 6.09 -26.65 -0.16 -1.16 16 22 C -0.12 -0.92 6.00 -26.61 -0.16 -1.08 16 23 C -0.12 -0.96 6.09 -26.65 -0.16 -1.12 16 24 C 0.06 0.48 5.44 -3.83 -0.02 0.46 16 25 H 0.06 0.50 7.31 -51.93 -0.38 0.12 16 26 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.08 1.19 7.59 -51.92 -0.39 0.80 16 30 H 0.39 4.58 7.68 -40.82 -0.31 4.27 16 31 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 32 H 0.08 1.48 8.14 -51.92 -0.42 1.06 16 33 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 34 H 0.02 0.71 8.10 -51.92 -0.42 0.29 16 35 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 36 H 0.04 0.29 8.06 -51.93 -0.42 -0.13 16 37 H 0.08 0.66 7.87 -51.93 -0.41 0.25 16 38 H 0.03 0.24 8.14 -51.93 -0.42 -0.19 16 39 H 0.08 0.66 6.43 -51.93 -0.33 0.33 16 40 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 44 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 45 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 46 H 0.07 0.62 7.96 -51.93 -0.41 0.21 16 47 H 0.03 0.23 8.14 -51.93 -0.42 -0.19 16 LS Contribution 368.94 15.07 5.56 5.56 Total: -1.00 -34.22 368.94 -9.98 -44.20 By element: Atomic # 1 Polarization: 7.73 SS G_CDS: -8.88 Total: -1.14 kcal Atomic # 6 Polarization: -6.76 SS G_CDS: -1.22 Total: -7.99 kcal Atomic # 7 Polarization: -43.88 SS G_CDS: -0.51 Total: -44.39 kcal Atomic # 8 Polarization: -13.28 SS G_CDS: 0.09 Total: -13.19 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -34.22 -9.98 -44.20 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360032964.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.781 kcal (2) G-P(sol) polarization free energy of solvation -34.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.199 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds