Wall clock time and date at job start Tue Mar 31 2020 05:47:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47325 * 2 1 4 4 C 1.52998 * 109.46976 * 120.00048 * 2 1 3 5 5 N 1.46498 * 109.47021 * 294.99808 * 4 2 1 6 6 C 1.34776 * 120.00043 * 180.02562 * 5 4 2 7 7 O 1.21281 * 120.00165 * 359.97438 * 6 5 4 8 8 C 1.50705 * 120.00177 * 180.02562 * 6 5 4 9 9 C 1.52998 * 109.47155 * 179.97438 * 8 6 5 10 10 C 1.50705 * 109.47155 * 180.02562 * 9 8 6 11 11 H 1.08001 * 119.99531 * 359.97438 * 10 9 8 12 12 C 1.37875 * 120.00004 * 180.02562 * 10 9 8 13 13 N 1.31514 * 119.99965 * 0.02562 * 12 10 9 14 14 Si 1.86797 * 119.99804 * 179.97438 * 12 10 9 15 15 H 1.48498 * 109.47223 * 359.97438 * 14 12 10 16 16 H 1.48506 * 109.46951 * 120.00325 * 14 12 10 17 17 H 1.48505 * 109.47143 * 239.99969 * 14 12 10 18 18 C 1.52995 * 109.47070 * 239.99880 * 2 1 3 19 19 N 1.46903 * 109.47212 * 175.90318 * 18 2 1 20 20 C 1.46849 * 110.99851 * 288.28847 * 19 18 2 21 21 C 1.53035 * 109.52318 * 174.15821 * 20 19 18 22 22 C 1.53123 * 109.27743 * 59.18213 * 21 20 19 23 23 C 1.53116 * 109.15713 * 302.34469 * 22 21 20 24 24 C 1.46846 * 111.00048 * 164.08291 * 19 18 2 25 25 H 1.09000 * 109.47349 * 305.03040 * 1 2 3 26 26 H 1.09004 * 109.47340 * 65.02629 * 1 2 3 27 27 H 1.08993 * 109.47156 * 185.02710 * 1 2 3 28 28 H 1.08996 * 109.47636 * 55.00156 * 4 2 1 29 29 H 1.09007 * 109.47300 * 175.00053 * 4 2 1 30 30 H 0.97002 * 120.00284 * 0.02562 * 5 4 2 31 31 H 1.09004 * 109.47002 * 299.99960 * 8 6 5 32 32 H 1.09007 * 109.46910 * 59.99542 * 8 6 5 33 33 H 1.09004 * 109.47418 * 300.00054 * 9 8 6 34 34 H 1.09007 * 109.47300 * 60.00131 * 9 8 6 35 35 H 0.97002 * 119.99740 * 180.02562 * 13 12 10 36 36 H 1.09007 * 109.47426 * 55.90551 * 18 2 1 37 37 H 1.08993 * 109.47528 * 295.90193 * 18 2 1 38 38 H 1.08998 * 109.46589 * 294.17514 * 20 19 18 39 39 H 1.09006 * 109.46136 * 54.14299 * 20 19 18 40 40 H 1.08999 * 109.50679 * 299.24055 * 21 20 19 41 41 H 1.09000 * 109.50312 * 179.12102 * 21 20 19 42 42 H 1.09002 * 109.51775 * 182.43653 * 22 21 20 43 43 H 1.08996 * 109.57087 * 62.28486 * 22 21 20 44 44 H 1.08996 * 109.50145 * 297.70896 * 23 22 21 45 45 H 1.09007 * 109.49833 * 177.59889 * 23 22 21 46 46 H 1.08998 * 109.46184 * 305.85195 * 24 19 18 47 47 H 1.08992 * 109.46568 * 65.82413 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 1.2492 5 7 1.6524 0.0354 2.4423 6 6 1.9963 -0.4130 3.6659 7 8 2.6263 -1.4432 3.7793 8 6 1.5972 0.3650 4.8933 9 6 2.1073 -0.3562 6.1425 10 6 1.7075 0.4215 7.3699 11 1 1.1462 1.3387 7.2690 12 6 2.0593 -0.0373 8.6216 13 7 2.7442 -1.1533 8.7444 14 14 1.5645 0.9271 10.1429 15 1 0.8073 2.1382 9.7367 16 1 0.7111 0.0773 11.0118 17 1 2.7823 1.3327 10.8898 18 6 2.0399 -0.7213 -1.2492 19 7 3.5056 -0.6362 -1.2997 20 6 3.9427 0.7272 -1.6265 21 6 5.4674 0.8130 -1.5277 22 6 6.0943 -0.1907 -2.4995 23 6 5.5852 -1.5962 -2.1679 24 6 4.0571 -1.6122 -2.2482 25 1 -0.3634 0.5899 0.8415 26 1 -0.3634 0.4339 -0.9316 27 1 -0.3633 -1.0236 0.0900 28 1 1.6054 -1.7198 1.2952 29 1 3.1263 -0.7995 1.2056 30 1 1.1482 0.8591 2.3517 31 1 2.0311 1.3639 4.8473 32 1 0.5107 0.4425 4.9370 33 1 1.6730 -1.3550 6.1883 34 1 3.1937 -0.4340 6.0991 35 1 2.9913 -1.4763 9.6250 36 1 1.6179 -0.2516 -2.1377 37 1 1.7379 -1.7679 -1.2133 38 1 3.6299 0.9755 -2.6407 39 1 3.4931 1.4305 -0.9255 40 1 5.7800 0.5782 -0.5102 41 1 5.7926 1.8209 -1.7855 42 1 7.1795 -0.1636 -2.4013 43 1 5.8145 0.0666 -3.5210 44 1 5.8997 -1.8688 -1.1606 45 1 5.9948 -2.3096 -2.8832 46 1 3.6907 -2.6080 -1.9988 47 1 3.7438 -1.3529 -3.2595 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360032964.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:15 Heat of formation + Delta-G solvation = -91.914260 kcal Electronic energy + Delta-G solvation = -22392.993318 eV Core-core repulsion = 19187.173501 eV Total energy + Delta-G solvation = -3205.819817 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.76772 -39.99437 -37.40950 -35.54745 -34.78005 -33.14847 -32.52588 -31.71609 -28.36261 -27.36948 -26.43278 -24.17680 -23.84037 -23.25496 -21.44468 -20.69219 -20.55662 -18.77575 -17.43001 -17.30714 -17.05081 -16.54500 -16.41465 -15.94750 -15.36298 -15.33408 -15.18362 -14.72246 -14.47648 -14.28272 -14.20469 -14.03939 -13.69120 -13.44113 -13.21672 -13.18688 -12.83251 -12.72035 -12.44191 -12.24476 -12.09161 -12.03555 -11.90579 -11.74852 -11.62394 -11.57517 -11.27061 -11.25064 -11.08583 -10.67474 -10.57060 -9.97892 -9.18081 -8.16939 -6.31132 1.42618 1.44433 1.57754 1.78102 2.33572 2.47960 2.93785 3.15895 3.77170 3.87238 3.90081 4.03282 4.08246 4.15606 4.17374 4.32211 4.46311 4.53203 4.53764 4.57608 4.59767 4.67368 4.70040 4.73214 4.79779 4.89734 4.94525 4.97734 5.04978 5.07168 5.11711 5.12282 5.23255 5.27445 5.33229 5.40103 5.48342 5.50119 5.61205 5.64900 5.87144 6.19012 6.19630 6.21914 6.69056 6.87824 7.38769 7.43051 8.96107 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.024741 B = 0.002826 C = 0.002689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1131.459377 B = 9905.517300 C =10411.807255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.085 4.085 3 H 0.085 0.915 4 C 0.134 3.866 5 N -0.717 5.717 6 C 0.508 3.492 7 O -0.593 6.593 8 C -0.119 4.119 9 C 0.042 3.958 10 C -0.541 4.541 11 H 0.077 0.923 12 C -0.009 4.009 13 N -0.939 5.939 14 Si 0.976 3.024 15 H -0.252 1.252 16 H -0.280 1.280 17 H -0.281 1.281 18 C 0.066 3.934 19 N -0.557 5.557 20 C 0.056 3.944 21 C -0.120 4.120 22 C -0.118 4.118 23 C -0.119 4.119 24 C 0.058 3.942 25 H 0.062 0.938 26 H 0.075 0.925 27 H 0.051 0.949 28 H 0.042 0.958 29 H 0.054 0.946 30 H 0.413 0.587 31 H 0.103 0.897 32 H 0.104 0.896 33 H -0.019 1.019 34 H -0.020 1.020 35 H 0.263 0.737 36 H 0.056 0.944 37 H 0.074 0.926 38 H 0.041 0.959 39 H 0.075 0.925 40 H 0.050 0.950 41 H 0.077 0.923 42 H 0.065 0.935 43 H 0.067 0.933 44 H 0.051 0.949 45 H 0.078 0.922 46 H 0.071 0.929 47 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.588 6.547 -28.327 29.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.104 4.104 3 H 0.104 0.896 4 C 0.011 3.989 5 N -0.370 5.370 6 C 0.296 3.704 7 O -0.473 6.473 8 C -0.159 4.159 9 C 0.004 3.996 10 C -0.579 4.579 11 H 0.095 0.905 12 C -0.206 4.206 13 N -0.579 5.579 14 Si 0.799 3.201 15 H -0.175 1.175 16 H -0.206 1.206 17 H -0.206 1.206 18 C -0.062 4.062 19 N -0.282 5.282 20 C -0.071 4.071 21 C -0.158 4.158 22 C -0.155 4.155 23 C -0.157 4.157 24 C -0.070 4.070 25 H 0.081 0.919 26 H 0.093 0.907 27 H 0.071 0.929 28 H 0.060 0.940 29 H 0.073 0.927 30 H 0.251 0.749 31 H 0.121 0.879 32 H 0.122 0.878 33 H -0.001 1.001 34 H -0.001 1.001 35 H 0.071 0.929 36 H 0.074 0.926 37 H 0.092 0.908 38 H 0.059 0.941 39 H 0.093 0.907 40 H 0.069 0.931 41 H 0.096 0.904 42 H 0.084 0.916 43 H 0.086 0.914 44 H 0.070 0.930 45 H 0.096 0.904 46 H 0.089 0.911 47 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -0.890 5.592 -27.705 28.278 hybrid contribution -0.282 0.247 0.325 0.497 sum -1.172 5.839 -27.380 28.020 Atomic orbital electron populations 1.21831 0.93238 1.02346 1.02964 1.21300 0.96543 1.00030 0.92535 0.89643 1.21266 0.99679 0.94396 0.83573 1.45944 1.57873 1.28267 1.04922 1.21343 0.77983 0.85074 0.86013 1.90651 1.42003 1.27130 1.87556 1.21631 1.03269 0.99928 0.91028 1.18691 0.94350 0.94387 0.92168 1.21753 1.35285 1.09160 0.91723 0.90531 1.26171 0.94979 0.96116 1.03374 1.70197 1.39968 1.23310 1.24399 0.85249 0.78016 0.78811 0.78003 1.17519 1.20600 1.20641 1.22074 0.86682 1.01086 0.96364 1.61849 1.09494 1.05794 1.51097 1.22123 0.95959 0.89669 0.99371 1.21598 0.94713 0.99777 0.99677 1.21556 1.00275 0.94568 0.99150 1.21597 0.94738 0.97661 1.01688 1.22074 0.95429 0.95825 0.93670 0.91893 0.90650 0.92945 0.93958 0.92740 0.74946 0.87866 0.87755 1.00068 1.00125 0.92879 0.92600 0.90776 0.94132 0.90680 0.93102 0.90438 0.91594 0.91398 0.92986 0.90369 0.91078 0.94102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.98 9.01 71.98 0.65 -1.33 16 2 C -0.08 -1.40 2.43 -10.80 -0.03 -1.43 16 3 H 0.09 1.30 6.51 -2.39 -0.02 1.28 16 4 C 0.13 3.54 5.01 86.38 0.43 3.97 16 5 N -0.72 -20.34 5.32 -463.06 -2.47 -22.80 16 6 C 0.51 20.68 7.83 87.66 0.69 21.37 16 7 O -0.59 -30.91 15.98 -3.03 -0.05 -30.96 16 8 C -0.12 -4.93 5.64 29.85 0.17 -4.76 16 9 C 0.04 2.39 4.26 29.85 0.13 2.52 16 10 C -0.54 -31.42 9.11 25.60 0.23 -31.19 16 11 H 0.08 4.04 7.74 -2.91 -0.02 4.01 16 12 C -0.01 -0.55 5.46 84.65 0.46 -0.08 16 13 N -0.94 -60.68 13.29 21.45 0.28 -60.40 16 14 Si 0.98 44.93 29.54 68.60 2.03 46.96 16 15 H -0.25 -10.65 7.11 99.48 0.71 -9.94 16 16 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 17 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 18 C 0.07 1.01 4.38 86.30 0.38 1.39 16 19 N -0.56 -9.97 3.94 -896.37 -3.54 -13.51 16 20 C 0.06 0.88 5.30 86.32 0.46 1.33 16 21 C -0.12 -1.91 6.09 30.65 0.19 -1.73 16 22 C -0.12 -1.67 6.00 30.67 0.18 -1.49 16 23 C -0.12 -1.88 6.09 30.65 0.19 -1.70 16 24 C 0.06 0.92 5.44 86.33 0.47 1.39 16 25 H 0.06 0.84 7.31 -2.39 -0.02 0.82 16 26 H 0.07 0.75 8.14 -2.38 -0.02 0.73 16 27 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 28 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 29 H 0.05 1.73 7.59 -2.38 -0.02 1.71 16 30 H 0.41 8.53 7.68 -92.71 -0.71 7.81 16 31 H 0.10 3.76 8.14 -2.38 -0.02 3.74 16 32 H 0.10 3.77 8.14 -2.38 -0.02 3.75 16 33 H -0.02 -1.24 8.10 -2.38 -0.02 -1.26 16 34 H -0.02 -1.28 8.10 -2.38 -0.02 -1.30 16 35 H 0.26 15.82 8.31 -92.71 -0.77 15.05 16 36 H 0.06 0.68 8.06 -2.38 -0.02 0.66 16 37 H 0.07 1.19 7.87 -2.39 -0.02 1.17 16 38 H 0.04 0.55 8.14 -2.39 -0.02 0.53 16 39 H 0.07 1.17 6.43 -2.38 -0.02 1.15 16 40 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 41 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 42 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 43 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 44 H 0.05 1.04 8.14 -2.39 -0.02 1.03 16 45 H 0.08 1.00 8.14 -2.38 -0.02 0.98 16 46 H 0.07 1.16 7.96 -2.39 -0.02 1.14 16 47 H 0.04 0.56 8.14 -2.39 -0.02 0.54 16 Total: -1.00 -78.09 368.94 1.06 -77.04 By element: Atomic # 1 Polarization: 15.20 SS G_CDS: 0.20 Total: 15.40 kcal Atomic # 6 Polarization: -16.33 SS G_CDS: 4.59 Total: -11.73 kcal Atomic # 7 Polarization: -90.99 SS G_CDS: -5.72 Total: -96.71 kcal Atomic # 8 Polarization: -30.91 SS G_CDS: -0.05 Total: -30.96 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 2.03 Total: 46.96 kcal Total: -78.09 1.06 -77.04 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360032964.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.877 kcal (2) G-P(sol) polarization free energy of solvation -78.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.037 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds