Wall clock time and date at job start Tue Mar 31 2020 06:01:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46905 * 109.47075 * 2 1 4 4 C 1.46905 * 110.99650 * 296.83238 * 3 2 1 5 5 C 1.53004 * 109.47254 * 288.21923 * 4 3 2 6 6 C 1.46890 * 110.99796 * 60.78232 * 3 2 1 7 7 C 1.52999 * 109.47079 * 66.05044 * 6 3 2 8 8 H 1.08998 * 110.88714 * 305.69639 * 7 6 3 9 9 C 1.55158 * 111.00773 * 69.57967 * 7 6 3 10 10 C 1.54316 * 102.94811 * 153.57584 * 9 7 6 11 11 N 1.47027 * 107.27136 * 337.81031 * 10 9 7 12 12 C 1.34773 * 125.65287 * 178.97337 * 11 10 9 13 13 O 1.21279 * 120.00055 * 179.97438 * 12 11 10 14 14 C 1.50695 * 119.99672 * 359.97388 * 12 11 10 15 15 C 1.53000 * 109.47317 * 179.97438 * 14 12 11 16 16 C 1.50700 * 109.47653 * 179.97438 * 15 14 12 17 17 H 1.08003 * 119.99885 * 359.97438 * 16 15 14 18 18 C 1.37879 * 120.00441 * 180.02562 * 16 15 14 19 19 N 1.31516 * 119.99469 * 359.97438 * 18 16 15 20 20 Si 1.86796 * 120.00129 * 180.02562 * 18 16 15 21 21 H 1.48494 * 109.47030 * 359.97438 * 20 18 16 22 22 H 1.48491 * 109.47219 * 119.99720 * 20 18 16 23 23 H 1.48501 * 109.46728 * 239.99543 * 20 18 16 24 24 C 1.47475 * 108.72102 * 358.97049 * 11 10 9 25 25 H 1.09008 * 109.47065 * 181.16316 * 1 2 3 26 26 H 1.08997 * 109.47459 * 301.16213 * 1 2 3 27 27 H 1.09003 * 109.47286 * 61.16988 * 1 2 3 28 28 H 1.09001 * 109.47150 * 240.00113 * 2 1 3 29 29 H 1.09002 * 109.47334 * 120.00055 * 2 1 3 30 30 H 1.08998 * 109.47544 * 48.22005 * 4 3 2 31 31 H 1.08996 * 109.46750 * 168.22158 * 4 3 2 32 32 H 1.09007 * 109.47026 * 299.82462 * 5 4 3 33 33 H 1.08994 * 109.47046 * 59.81877 * 5 4 3 34 34 H 1.08996 * 109.46901 * 179.82377 * 5 4 3 35 35 H 1.08995 * 109.47862 * 306.04580 * 6 3 2 36 36 H 1.09005 * 109.47133 * 186.04885 * 6 3 2 37 37 H 1.08998 * 110.71750 * 271.94202 * 9 7 6 38 38 H 1.08999 * 110.72098 * 35.03267 * 9 7 6 39 39 H 1.09003 * 109.88386 * 97.21968 * 10 9 7 40 40 H 1.08996 * 109.88926 * 218.23232 * 10 9 7 41 41 H 1.09000 * 109.47237 * 299.99834 * 14 12 11 42 42 H 1.09008 * 109.47531 * 59.99791 * 14 12 11 43 43 H 1.09000 * 109.46913 * 300.00132 * 15 14 12 44 44 H 1.09000 * 109.47003 * 59.99848 * 15 14 12 45 45 H 0.96999 * 119.99512 * 179.97438 * 19 18 16 46 46 H 1.09003 * 110.34698 * 265.25903 * 24 11 10 47 47 H 1.08998 * 110.40308 * 142.91776 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.6114 2.0877 -1.2238 5 6 2.4133 1.5514 -2.4114 6 6 1.5640 2.1044 1.1969 7 6 2.2118 1.4894 2.4391 8 1 2.0247 0.4166 2.4841 9 6 3.7332 1.7908 2.4799 10 6 4.0553 1.7403 3.9883 11 7 2.7970 1.9757 4.7114 12 6 2.6518 1.9901 6.0513 13 8 1.5615 2.1959 6.5409 14 6 3.8443 1.7506 6.9409 15 6 3.4097 1.8203 8.4062 16 6 4.6021 1.5802 9.2960 17 1 5.5728 1.3957 8.8599 18 6 4.4536 1.5948 10.6667 19 7 3.2714 1.8189 11.1976 20 14 5.9318 1.2978 11.7695 21 1 7.1370 1.0728 10.9317 22 1 6.1467 2.4823 12.6388 23 1 5.6864 0.1016 12.6145 24 6 1.7196 2.1934 3.7282 25 1 -0.3633 -1.0275 0.0209 26 1 -0.3634 0.5317 0.8793 27 1 -0.3634 0.4956 -0.9003 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 0.5483 1.9237 -1.3996 31 1 1.8005 3.1551 -1.1101 32 1 3.4764 1.7183 -2.2371 33 1 2.2268 0.4833 -2.5231 34 1 2.1082 2.0706 -3.3199 35 1 0.4797 2.0272 1.2766 36 1 1.8487 3.1539 1.1205 37 1 4.2924 1.0264 1.9404 38 1 3.9417 2.7795 2.0712 39 1 4.4551 0.7605 4.2494 40 1 4.7800 2.5149 4.2388 41 1 4.2616 0.7655 6.7319 42 1 4.5995 2.5130 6.7496 43 1 2.9927 2.8056 8.6150 44 1 2.6545 1.0581 8.5979 45 1 3.1669 1.8289 12.1619 46 1 1.5802 3.2595 3.5487 47 1 0.7907 1.7417 4.0762 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360331526.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:24 Heat of formation + Delta-G solvation = -45.749193 kcal Electronic energy + Delta-G solvation = -22468.616388 eV Core-core repulsion = 19264.798439 eV Total energy + Delta-G solvation = -3203.817949 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.93494 -38.72399 -36.90687 -33.43676 -32.66007 -31.60173 -30.85221 -29.75283 -28.78632 -26.13837 -24.92954 -24.15328 -22.83393 -21.31736 -20.66821 -19.75976 -18.54872 -17.01633 -16.66878 -16.32053 -15.83090 -15.74994 -14.76696 -14.62159 -14.42647 -14.21860 -13.86002 -13.61692 -13.37505 -13.10450 -12.74094 -12.51309 -12.48200 -12.25701 -12.14575 -11.99464 -11.83485 -11.70638 -11.38410 -11.20247 -11.13914 -10.98904 -10.92677 -10.83674 -10.54965 -10.51514 -9.91425 -9.61793 -9.13378 -8.96818 -8.57353 -8.34249 -8.27549 -5.93522 -3.97638 3.27421 3.31491 3.34394 3.41483 3.45103 3.59647 4.44567 4.50095 4.50530 4.57738 4.69933 4.84650 4.88622 4.93889 5.06183 5.17698 5.18131 5.22059 5.24083 5.33498 5.41391 5.45752 5.46323 5.54610 5.61795 5.65879 5.69480 5.75752 5.80047 5.85578 5.90279 5.99480 6.02870 6.18440 6.28645 6.30132 6.61561 6.75994 6.77718 6.94307 7.77872 7.89883 7.92893 8.10448 8.41809 8.80222 9.11122 9.65670 11.17566 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.041211 B = 0.002662 C = 0.002594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 679.272886 B =10517.217884 C =10792.800656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.044 3.956 3 N -0.532 5.532 4 C 0.044 3.956 5 C -0.146 4.146 6 C 0.062 3.938 7 C -0.098 4.098 8 H 0.084 0.916 9 C -0.111 4.111 10 C 0.100 3.900 11 N -0.630 5.630 12 C 0.525 3.475 13 O -0.535 6.535 14 C -0.124 4.124 15 C 0.036 3.964 16 C -0.525 4.525 17 H 0.056 0.944 18 C 0.057 3.943 19 N -0.890 5.890 20 Si 0.893 3.107 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.284 1.284 24 C 0.111 3.889 25 H 0.061 0.939 26 H 0.060 0.940 27 H 0.056 0.944 28 H 0.075 0.925 29 H 0.079 0.921 30 H 0.038 0.962 31 H 0.071 0.929 32 H 0.062 0.938 33 H 0.053 0.947 34 H 0.055 0.945 35 H 0.043 0.957 36 H 0.077 0.923 37 H 0.082 0.918 38 H 0.074 0.926 39 H 0.067 0.933 40 H 0.067 0.933 41 H 0.078 0.922 42 H 0.078 0.922 43 H 0.023 0.977 44 H 0.023 0.977 45 H 0.260 0.740 46 H 0.061 0.939 47 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.785 -1.362 -28.374 28.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.254 4.254 2 C -0.084 4.084 3 N -0.256 5.256 4 C -0.083 4.083 5 C -0.204 4.204 6 C -0.066 4.066 7 C -0.117 4.117 8 H 0.103 0.897 9 C -0.149 4.149 10 C -0.023 4.023 11 N -0.367 5.367 12 C 0.316 3.684 13 O -0.411 6.411 14 C -0.163 4.163 15 C -0.001 4.001 16 C -0.563 4.563 17 H 0.074 0.926 18 C -0.145 4.145 19 N -0.529 5.529 20 Si 0.721 3.279 21 H -0.197 1.197 22 H -0.210 1.210 23 H -0.210 1.210 24 C -0.013 4.013 25 H 0.080 0.920 26 H 0.079 0.921 27 H 0.075 0.925 28 H 0.094 0.906 29 H 0.097 0.903 30 H 0.057 0.943 31 H 0.090 0.910 32 H 0.081 0.919 33 H 0.072 0.928 34 H 0.074 0.926 35 H 0.061 0.939 36 H 0.095 0.905 37 H 0.101 0.899 38 H 0.092 0.908 39 H 0.085 0.915 40 H 0.085 0.915 41 H 0.096 0.904 42 H 0.096 0.904 43 H 0.042 0.958 44 H 0.041 0.959 45 H 0.070 0.930 46 H 0.080 0.920 47 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -1.951 -1.235 -27.813 27.909 hybrid contribution -0.132 -0.147 0.602 0.633 sum -2.083 -1.382 -27.212 27.326 Atomic orbital electron populations 1.22437 0.98379 1.02539 1.02095 1.22227 0.92834 0.90365 1.02952 1.62234 1.59416 1.02257 1.01664 1.22135 0.97687 0.98398 0.90126 1.21759 1.01072 1.00972 0.96595 1.22085 0.97682 0.97911 0.88968 1.22363 0.95934 1.00516 0.92926 0.89736 1.22537 0.95350 1.02767 0.94252 1.22022 0.87113 1.01411 0.91787 1.48716 1.09481 1.73248 1.05291 1.21319 0.91903 0.75071 0.80056 1.90668 1.28432 1.48442 1.73539 1.21838 0.94286 1.01993 0.98224 1.18918 0.96544 0.98525 0.86159 1.21259 0.94832 1.48986 0.91237 0.92555 1.25036 0.95766 0.95388 0.98289 1.70016 1.22223 1.49384 1.11253 0.86529 0.82933 0.77776 0.80695 1.19742 1.21027 1.21032 1.22084 0.92003 0.99627 0.87552 0.92021 0.92083 0.92521 0.90643 0.90302 0.94341 0.91026 0.91865 0.92795 0.92574 0.93935 0.90488 0.89950 0.90760 0.91512 0.91470 0.90365 0.90358 0.95840 0.95852 0.93033 0.92037 0.90857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.33 9.28 37.16 0.34 -0.99 16 2 C 0.04 0.31 5.72 -3.82 -0.02 0.29 16 3 N -0.53 -3.96 4.56 -234.63 -1.07 -5.03 16 4 C 0.04 0.29 5.56 -3.82 -0.02 0.27 16 5 C -0.15 -0.85 9.96 37.16 0.37 -0.48 16 6 C 0.06 0.49 4.17 -3.83 -0.02 0.48 16 7 C -0.10 -0.93 2.94 -88.47 -0.26 -1.19 16 8 H 0.08 0.84 6.40 -51.93 -0.33 0.50 16 9 C -0.11 -1.02 6.32 -24.90 -0.16 -1.18 16 10 C 0.10 1.19 6.49 -3.07 -0.02 1.17 16 11 N -0.63 -9.90 3.33 -170.48 -0.57 -10.47 16 12 C 0.53 10.90 7.85 -10.99 -0.09 10.81 16 13 O -0.54 -13.36 16.24 5.56 0.09 -13.27 16 14 C -0.12 -2.65 4.83 -27.89 -0.13 -2.78 16 15 C 0.04 1.00 4.26 -27.88 -0.12 0.88 16 16 C -0.52 -15.19 9.11 -34.44 -0.31 -15.50 16 17 H 0.06 1.54 7.74 -52.48 -0.41 1.13 16 18 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 19 N -0.89 -27.86 13.29 55.43 0.74 -27.12 16 20 Si 0.89 21.95 29.54 -169.99 -5.02 16.93 16 21 H -0.27 -6.48 7.11 56.52 0.40 -6.07 16 22 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 23 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 24 C 0.11 1.44 6.38 -2.50 -0.02 1.43 16 25 H 0.06 0.39 8.14 -51.92 -0.42 -0.03 16 26 H 0.06 0.47 6.23 -51.93 -0.32 0.14 16 27 H 0.06 0.37 6.30 -51.93 -0.33 0.04 16 28 H 0.08 0.49 6.58 -51.93 -0.34 0.15 16 29 H 0.08 0.60 6.35 -51.93 -0.33 0.27 16 30 H 0.04 0.25 5.92 -51.93 -0.31 -0.06 16 31 H 0.07 0.46 7.81 -51.93 -0.41 0.05 16 32 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.05 0.31 6.69 -51.93 -0.35 -0.04 16 34 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 35 H 0.04 0.35 6.00 -51.93 -0.31 0.03 16 36 H 0.08 0.60 7.76 -51.93 -0.40 0.20 16 37 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.07 0.65 7.96 -51.93 -0.41 0.24 16 39 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.08 1.55 8.14 -51.93 -0.42 1.12 16 42 H 0.08 1.55 8.14 -51.92 -0.42 1.12 16 43 H 0.02 0.71 8.10 -51.93 -0.42 0.29 16 44 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 45 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 46 H 0.06 0.77 8.04 -51.93 -0.42 0.35 16 47 H 0.07 1.05 8.04 -51.93 -0.42 0.63 16 LS Contribution 364.05 15.07 5.49 5.49 Total: -1.00 -33.97 364.05 -9.34 -43.31 By element: Atomic # 1 Polarization: 3.84 SS G_CDS: -8.44 Total: -4.60 kcal Atomic # 6 Polarization: -4.67 SS G_CDS: -0.55 Total: -5.22 kcal Atomic # 7 Polarization: -41.73 SS G_CDS: -0.90 Total: -42.63 kcal Atomic # 8 Polarization: -13.36 SS G_CDS: 0.09 Total: -13.27 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -33.97 -9.34 -43.31 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360331526.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.440 kcal (2) G-P(sol) polarization free energy of solvation -33.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.309 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds