Wall clock time and date at job start Tue Mar 31 2020 06:01:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46903 * 109.47025 * 2 1 4 4 C 1.46901 * 110.99829 * 160.28795 * 3 2 1 5 5 C 1.53003 * 109.47339 * 287.96028 * 4 3 2 6 6 C 1.46899 * 111.00228 * 284.24359 * 3 2 1 7 7 C 1.52997 * 109.46920 * 169.99972 * 6 3 2 8 8 H 1.08998 * 110.91764 * 51.10042 * 7 6 3 9 9 C 1.55154 * 111.00406 * 287.19191 * 7 6 3 10 10 C 1.54325 * 102.94104 * 206.42510 * 9 7 6 11 11 N 1.47019 * 107.27354 * 22.19804 * 10 9 7 12 12 C 1.34775 * 125.65302 * 181.07889 * 11 10 9 13 13 O 1.21276 * 120.00544 * 179.97438 * 12 11 10 14 14 C 1.50704 * 119.99701 * 359.97429 * 12 11 10 15 15 C 1.52990 * 109.47255 * 180.02562 * 14 12 11 16 16 C 1.50701 * 109.47569 * 179.97438 * 15 14 12 17 17 H 1.08002 * 119.99464 * 0.02562 * 16 15 14 18 18 C 1.37881 * 120.00231 * 179.97438 * 16 15 14 19 19 N 1.31504 * 120.00058 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 119.99669 * 180.02562 * 18 16 15 21 21 H 1.48491 * 109.47660 * 60.00134 * 20 18 16 22 22 H 1.48507 * 109.46862 * 180.02562 * 20 18 16 23 23 H 1.48507 * 109.47341 * 299.99918 * 20 18 16 24 24 C 1.47424 * 108.70128 * 1.05625 * 11 10 9 25 25 H 1.09001 * 109.47281 * 185.50942 * 1 2 3 26 26 H 1.09003 * 109.47157 * 305.50588 * 1 2 3 27 27 H 1.09000 * 109.47608 * 65.50749 * 1 2 3 28 28 H 1.08999 * 109.47025 * 240.00276 * 2 1 3 29 29 H 1.09001 * 109.47155 * 119.99818 * 2 1 3 30 30 H 1.08999 * 109.46930 * 47.96218 * 4 3 2 31 31 H 1.08992 * 109.47034 * 167.96158 * 4 3 2 32 32 H 1.09003 * 109.46931 * 59.24401 * 5 4 3 33 33 H 1.08996 * 109.47148 * 179.24806 * 5 4 3 34 34 H 1.09002 * 109.46766 * 299.24881 * 5 4 3 35 35 H 1.09000 * 109.46872 * 49.99711 * 6 3 2 36 36 H 1.08997 * 109.46812 * 290.00246 * 6 3 2 37 37 H 1.09004 * 110.71658 * 88.06788 * 9 7 6 38 38 H 1.08998 * 110.87652 * 324.86278 * 9 7 6 39 39 H 1.09000 * 109.88511 * 262.77404 * 10 9 7 40 40 H 1.09002 * 110.01094 * 141.68703 * 10 9 7 41 41 H 1.09002 * 109.47309 * 300.00185 * 14 12 11 42 42 H 1.09004 * 109.46869 * 59.99933 * 14 12 11 43 43 H 1.08999 * 109.47366 * 299.99882 * 15 14 12 44 44 H 1.08999 * 109.47708 * 59.99739 * 15 14 12 45 45 H 0.97000 * 120.00274 * 180.02562 * 19 18 16 46 46 H 1.09000 * 110.36909 * 94.71270 * 24 11 10 47 47 H 1.08995 * 110.36984 * 217.03436 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4123 1.4510 0.4626 5 6 3.4626 1.1866 1.9688 6 6 1.8770 1.9939 -1.3292 7 6 2.1587 3.4948 -1.2356 8 1 3.1052 3.6821 -0.7285 9 6 0.9930 4.2364 -0.5295 10 6 1.0885 5.6628 -1.1108 11 7 1.8091 5.5662 -2.3886 12 6 2.1161 6.5996 -3.1974 13 8 2.7166 6.4021 -4.2324 14 6 1.7131 8.0007 -2.8157 15 6 2.1782 8.9777 -3.8973 16 6 1.7747 10.3787 -3.5159 17 1 1.2404 10.5547 -2.5940 18 6 2.0887 11.4360 -4.3434 19 7 2.7397 11.2218 -5.4657 20 14 1.5891 13.1726 -3.8702 21 1 2.2177 13.5328 -2.5740 22 1 2.0405 14.1209 -4.9202 23 1 0.1115 13.2448 -3.7408 24 6 2.1408 4.1517 -2.6384 25 1 -0.3634 -1.0229 0.0987 26 1 -0.3633 0.5969 0.8366 27 1 -0.3634 0.4260 -0.9352 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 4.0042 0.6984 -0.0584 31 1 3.8180 2.4408 0.2537 32 1 3.0445 0.2022 2.1790 33 1 4.4973 1.2224 2.3096 34 1 2.8816 1.9471 2.4906 35 1 0.8618 1.8367 -1.6938 36 1 2.5855 1.5334 -2.0177 37 1 1.1419 4.2492 0.5502 38 1 0.0348 3.7813 -0.7799 39 1 1.6369 6.3072 -0.4236 40 1 0.0893 6.0650 -1.2782 41 1 0.6286 8.0538 -2.7207 42 1 2.1745 8.2649 -1.8641 43 1 3.2627 8.9249 -3.9927 44 1 1.7166 8.7134 -4.8486 45 1 2.9609 11.9656 -6.0477 46 1 1.3786 3.6881 -3.2647 47 1 3.1208 4.0691 -3.1084 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360331527.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:26 Heat of formation + Delta-G solvation = -48.614192 kcal Electronic energy + Delta-G solvation = -22433.903002 eV Core-core repulsion = 19229.960817 eV Total energy + Delta-G solvation = -3203.942185 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.88969 -38.53905 -36.84416 -33.43683 -32.51370 -32.16896 -30.87308 -29.81108 -28.73629 -26.18011 -24.73651 -23.36639 -22.93627 -21.54877 -20.91711 -20.05517 -18.55353 -16.96748 -16.64676 -15.94390 -15.68444 -15.60055 -14.95109 -14.73279 -14.37907 -14.17802 -14.16337 -13.84251 -13.19101 -13.06113 -12.60838 -12.52698 -12.38014 -12.27504 -12.09706 -11.92748 -11.85185 -11.80442 -11.34890 -11.25378 -11.11213 -10.95103 -10.88851 -10.85499 -10.58546 -10.53091 -9.90545 -9.61783 -9.14858 -8.98002 -8.63684 -8.34303 -8.27299 -5.93128 -3.97484 3.26859 3.30863 3.36440 3.40943 3.43012 3.55676 4.44208 4.49616 4.50548 4.57225 4.68020 4.85659 4.87327 5.02348 5.13829 5.15262 5.19504 5.28577 5.31931 5.34034 5.41555 5.45414 5.49003 5.54849 5.60124 5.65808 5.68586 5.75586 5.85146 5.89976 5.90070 5.93990 6.02764 6.17337 6.28400 6.29891 6.61337 6.76656 6.78367 6.94180 7.77299 7.89962 7.92467 8.10618 8.41860 8.79891 9.10863 9.65703 11.17895 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.036242 B = 0.002681 C = 0.002653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 772.389757 B =10441.762342 C =10552.755599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.048 3.952 3 N -0.535 5.535 4 C 0.043 3.957 5 C -0.146 4.146 6 C 0.065 3.935 7 C -0.099 4.099 8 H 0.086 0.914 9 C -0.111 4.111 10 C 0.100 3.900 11 N -0.630 5.630 12 C 0.525 3.475 13 O -0.535 6.535 14 C -0.124 4.124 15 C 0.037 3.963 16 C -0.527 4.527 17 H 0.055 0.945 18 C 0.058 3.942 19 N -0.890 5.890 20 Si 0.893 3.107 21 H -0.277 1.277 22 H -0.287 1.287 23 H -0.277 1.277 24 C 0.111 3.889 25 H 0.055 0.945 26 H 0.064 0.936 27 H 0.053 0.947 28 H 0.033 0.967 29 H 0.074 0.926 30 H 0.032 0.968 31 H 0.079 0.921 32 H 0.052 0.948 33 H 0.056 0.944 34 H 0.063 0.937 35 H 0.080 0.920 36 H 0.036 0.964 37 H 0.082 0.918 38 H 0.074 0.926 39 H 0.067 0.933 40 H 0.067 0.933 41 H 0.078 0.922 42 H 0.078 0.922 43 H 0.023 0.977 44 H 0.023 0.977 45 H 0.261 0.739 46 H 0.062 0.938 47 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.180 -23.778 15.122 28.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.080 4.080 3 N -0.260 5.260 4 C -0.084 4.084 5 C -0.204 4.204 6 C -0.063 4.063 7 C -0.118 4.118 8 H 0.104 0.896 9 C -0.149 4.149 10 C -0.023 4.023 11 N -0.367 5.367 12 C 0.316 3.684 13 O -0.411 6.411 14 C -0.163 4.163 15 C -0.001 4.001 16 C -0.565 4.565 17 H 0.073 0.927 18 C -0.144 4.144 19 N -0.529 5.529 20 Si 0.721 3.279 21 H -0.202 1.202 22 H -0.213 1.213 23 H -0.202 1.202 24 C -0.013 4.013 25 H 0.074 0.926 26 H 0.083 0.917 27 H 0.072 0.928 28 H 0.051 0.949 29 H 0.092 0.908 30 H 0.050 0.950 31 H 0.097 0.903 32 H 0.071 0.929 33 H 0.075 0.925 34 H 0.082 0.918 35 H 0.098 0.902 36 H 0.055 0.945 37 H 0.101 0.899 38 H 0.092 0.908 39 H 0.085 0.915 40 H 0.085 0.915 41 H 0.096 0.904 42 H 0.096 0.904 43 H 0.041 0.959 44 H 0.041 0.959 45 H 0.071 0.929 46 H 0.080 0.920 47 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -3.042 -23.432 14.654 27.804 hybrid contribution 0.224 0.476 -0.325 0.619 sum -2.818 -22.955 14.329 27.207 Atomic orbital electron populations 1.21767 0.94807 1.01364 1.02512 1.22119 0.96302 0.88849 1.00741 1.62033 1.20360 1.17801 1.25794 1.22173 0.88557 1.01574 0.96115 1.21778 1.01401 1.01920 0.95294 1.22051 1.01606 0.93358 0.89249 1.22405 0.99823 0.93719 0.95900 0.89628 1.22545 0.98381 0.93469 1.00528 1.22029 0.96974 0.97900 0.85430 1.48704 1.58801 1.06597 1.22641 1.21324 0.77900 0.86635 0.82493 1.90668 1.40627 1.85261 1.24496 1.21839 1.01740 0.89741 1.03019 1.18904 0.97376 0.91286 0.92502 1.21186 1.37052 0.91944 1.06323 0.92661 1.25025 0.95218 0.99142 0.95010 1.69985 1.39704 1.31589 1.11609 0.86647 0.78884 0.84293 0.78071 1.20247 1.21295 1.20247 1.22076 1.01209 0.82101 0.95903 0.92573 0.91711 0.92795 0.94885 0.90782 0.94990 0.90287 0.92894 0.92457 0.91799 0.90172 0.94547 0.89933 0.90780 0.91503 0.91463 0.90358 0.90365 0.95858 0.95851 0.92905 0.92024 0.90838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.91 9.94 37.15 0.37 -0.54 16 2 C 0.05 0.32 5.55 -3.82 -0.02 0.30 16 3 N -0.54 -4.09 4.34 -234.63 -1.02 -5.11 16 4 C 0.04 0.32 5.55 -3.82 -0.02 0.30 16 5 C -0.15 -0.94 9.99 37.16 0.37 -0.56 16 6 C 0.07 0.54 4.24 -3.83 -0.02 0.52 16 7 C -0.10 -0.95 3.00 -88.47 -0.27 -1.22 16 8 H 0.09 0.85 6.10 -51.93 -0.32 0.54 16 9 C -0.11 -1.02 6.37 -24.90 -0.16 -1.18 16 10 C 0.10 1.18 6.49 -3.07 -0.02 1.16 16 11 N -0.63 -9.91 3.33 -170.52 -0.57 -10.47 16 12 C 0.53 10.90 7.85 -10.98 -0.09 10.81 16 13 O -0.54 -13.35 16.24 5.56 0.09 -13.26 16 14 C -0.12 -2.65 4.83 -27.89 -0.13 -2.78 16 15 C 0.04 1.02 4.26 -27.89 -0.12 0.90 16 16 C -0.53 -15.25 9.11 -34.44 -0.31 -15.56 16 17 H 0.06 1.50 7.74 -52.49 -0.41 1.10 16 18 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 19 N -0.89 -27.87 13.29 55.43 0.74 -27.14 16 20 Si 0.89 21.95 29.54 -169.99 -5.02 16.93 16 21 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 22 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 23 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 24 C 0.11 1.44 6.38 -2.53 -0.02 1.43 16 25 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 26 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.05 0.35 6.97 -51.93 -0.36 -0.01 16 28 H 0.03 0.23 8.00 -51.93 -0.42 -0.19 16 29 H 0.07 0.46 6.24 -51.93 -0.32 0.13 16 30 H 0.03 0.23 8.05 -51.93 -0.42 -0.18 16 31 H 0.08 0.62 5.87 -51.93 -0.30 0.32 16 32 H 0.05 0.32 6.52 -51.93 -0.34 -0.02 16 33 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 34 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.08 0.64 6.56 -51.93 -0.34 0.30 16 36 H 0.04 0.31 8.12 -51.93 -0.42 -0.11 16 37 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.07 0.64 7.92 -51.93 -0.41 0.23 16 39 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 41 H 0.08 1.55 8.14 -51.93 -0.42 1.12 16 42 H 0.08 1.54 8.14 -51.93 -0.42 1.12 16 43 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 44 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 45 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 46 H 0.06 0.77 8.04 -51.93 -0.42 0.36 16 47 H 0.07 1.06 8.04 -51.93 -0.42 0.64 16 LS Contribution 368.99 15.07 5.56 5.56 Total: -1.00 -33.93 368.99 -9.42 -43.35 By element: Atomic # 1 Polarization: 3.63 SS G_CDS: -8.67 Total: -5.05 kcal Atomic # 6 Polarization: -4.28 SS G_CDS: -0.53 Total: -4.81 kcal Atomic # 7 Polarization: -41.87 SS G_CDS: -0.85 Total: -42.72 kcal Atomic # 8 Polarization: -13.35 SS G_CDS: 0.09 Total: -13.26 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -33.93 -9.42 -43.35 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360331527.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.260 kcal (2) G-P(sol) polarization free energy of solvation -33.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds