Wall clock time and date at job start Tue Mar 31 2020 05:38:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09005 * 109.46677 * 2 1 4 4 C 1.52995 * 109.47087 * 240.00592 * 2 1 3 5 5 C 1.53003 * 109.47411 * 175.81159 * 4 2 1 6 6 N 1.46498 * 109.47645 * 179.97438 * 5 4 2 7 7 C 1.34771 * 120.00170 * 179.97438 * 6 5 4 8 8 O 1.21282 * 119.99857 * 0.02562 * 7 6 5 9 9 C 1.50701 * 119.99742 * 179.97438 * 7 6 5 10 10 C 1.53008 * 109.46734 * 180.02562 * 9 7 6 11 11 C 1.50698 * 109.46906 * 180.02562 * 10 9 7 12 12 H 1.08000 * 120.00049 * 0.02562 * 11 10 9 13 13 C 1.37881 * 119.99878 * 180.02562 * 11 10 9 14 14 N 1.31512 * 120.00145 * 359.97438 * 13 11 10 15 15 Si 1.86794 * 119.99846 * 180.02562 * 13 11 10 16 16 H 1.48500 * 109.47282 * 89.99624 * 15 13 11 17 17 H 1.48498 * 109.47347 * 209.99619 * 15 13 11 18 18 H 1.48501 * 109.47336 * 329.99495 * 15 13 11 19 19 N 1.46894 * 109.47371 * 120.00294 * 2 1 3 20 20 C 1.46850 * 111.00128 * 289.34762 * 19 2 1 21 21 C 1.53033 * 109.51691 * 185.84343 * 20 19 2 22 22 C 1.53115 * 109.27897 * 300.80511 * 21 20 19 23 23 C 1.53120 * 109.15444 * 57.66776 * 22 21 20 24 24 C 1.46844 * 111.00114 * 53.55390 * 19 2 1 25 25 H 1.08996 * 109.47261 * 60.00105 * 1 2 3 26 26 H 1.09006 * 109.46738 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.46872 * 299.99442 * 1 2 3 28 28 H 1.09001 * 109.47145 * 295.80707 * 4 2 1 29 29 H 1.08998 * 109.47692 * 55.80692 * 4 2 1 30 30 H 1.09001 * 109.46597 * 299.99884 * 5 4 2 31 31 H 1.09002 * 109.46816 * 59.99591 * 5 4 2 32 32 H 0.96997 * 119.99682 * 359.97438 * 6 5 4 33 33 H 1.09001 * 109.47634 * 299.99997 * 9 7 6 34 34 H 1.08993 * 109.46887 * 60.00616 * 9 7 6 35 35 H 1.09001 * 109.46960 * 300.00290 * 10 9 7 36 36 H 1.09002 * 109.46936 * 60.00292 * 10 9 7 37 37 H 0.97001 * 120.00171 * 180.02562 * 14 13 11 38 38 H 1.09003 * 109.46117 * 305.85511 * 20 19 2 39 39 H 1.08998 * 109.46310 * 65.82758 * 20 19 2 40 40 H 1.09003 * 109.50603 * 60.75535 * 21 20 19 41 41 H 1.09004 * 109.50312 * 180.86924 * 21 20 19 42 42 H 1.09000 * 109.52836 * 297.76085 * 22 21 20 43 43 H 1.09001 * 109.57617 * 177.60545 * 22 21 20 44 44 H 1.08994 * 109.50213 * 182.39672 * 23 22 21 45 45 H 1.09005 * 109.53028 * 62.30174 * 23 22 21 46 46 H 1.09002 * 109.46275 * 294.18129 * 24 19 2 47 47 H 1.09000 * 109.46470 * 54.15713 * 24 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 3.5664 -0.6305 -1.3031 6 7 4.0548 -1.3215 -2.4990 7 6 5.3769 -1.3710 -2.7560 8 8 6.1623 -0.8438 -1.9970 9 6 5.8793 -2.0823 -3.9860 10 6 7.4057 -1.9916 -4.0398 11 6 7.9081 -2.7023 -5.2700 12 1 7.2086 -3.1715 -5.9461 13 6 9.2607 -2.7537 -5.5324 14 7 10.1124 -2.1821 -4.7094 15 14 9.8833 -3.6341 -7.0577 16 1 9.9524 -2.6751 -8.1893 17 1 11.2364 -4.1859 -6.7932 18 1 8.9562 -4.7415 -7.4033 19 7 2.0198 -0.6925 1.1993 20 6 1.7670 0.1038 2.4070 21 6 2.4168 -0.5770 3.6136 22 6 1.8330 -1.9832 3.7758 23 6 2.0669 -2.7759 2.4868 24 6 1.4274 -2.0314 1.3127 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5137 0.8900 28 1 1.7393 -1.7682 -1.2126 29 1 1.6167 -0.2525 -2.1377 30 1 3.8671 0.4165 -1.3398 31 1 3.9897 -1.0993 -0.4147 32 1 3.4267 -1.7434 -3.1058 33 1 5.5790 -3.1295 -3.9483 34 1 5.4556 -1.6146 -4.8746 35 1 7.7063 -0.9445 -4.0773 36 1 7.8290 -2.4596 -3.1510 37 1 11.0640 -2.2179 -4.8942 38 1 2.1907 1.1001 2.2803 39 1 0.6924 0.1845 2.5705 40 1 3.4933 -0.6456 3.4568 41 1 2.2160 0.0062 4.5124 42 1 0.7630 -1.9131 3.9713 43 1 2.3230 -2.4883 4.6082 44 1 1.6160 -3.7638 2.5804 45 1 3.1378 -2.8797 2.3121 46 1 0.3543 -1.9407 1.4813 47 1 1.6046 -2.5862 0.3913 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360783319.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:21 Heat of formation + Delta-G solvation = -65.214702 kcal Electronic energy + Delta-G solvation = -22374.195203 eV Core-core repulsion = 19169.533166 eV Total energy + Delta-G solvation = -3204.662037 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.89156 -38.88910 -35.99268 -34.07924 -33.37052 -31.32129 -31.01883 -30.46889 -28.79507 -25.75574 -24.70972 -23.51396 -22.97526 -21.26199 -20.81885 -19.61060 -19.19332 -16.82186 -16.72319 -15.63344 -15.52452 -15.26341 -15.04667 -14.81005 -14.45186 -14.37622 -14.28917 -13.99856 -13.39895 -13.15871 -12.98538 -12.61690 -12.36312 -12.22914 -12.13638 -11.99705 -11.62292 -11.37665 -11.14779 -11.08897 -11.02377 -10.94376 -10.88174 -10.58061 -10.55462 -10.46121 -9.88548 -9.59095 -9.09878 -8.90960 -8.63556 -8.42890 -8.26934 -5.91337 -3.95508 3.36244 3.40669 3.42030 3.44779 3.60363 3.68999 4.49071 4.51802 4.54575 4.62548 4.70468 4.79969 4.96312 5.00925 5.09085 5.14755 5.23001 5.27206 5.31067 5.43350 5.44202 5.47528 5.52222 5.55747 5.68277 5.69959 5.72463 5.76698 5.84639 5.91782 5.96000 6.11495 6.15847 6.28341 6.32263 6.35363 6.88164 6.89247 6.92338 6.98306 7.79984 7.93624 8.04108 8.13493 8.44754 8.92874 9.13849 9.67622 11.19664 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.028788 B = 0.002673 C = 0.002579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.408119 B =10472.666329 C =10854.500162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.084 3.916 3 H 0.086 0.914 4 C -0.122 4.122 5 C 0.126 3.874 6 N -0.747 5.747 7 C 0.508 3.492 8 O -0.535 6.535 9 C -0.130 4.130 10 C 0.037 3.963 11 C -0.526 4.526 12 H 0.055 0.945 13 C 0.057 3.943 14 N -0.890 5.890 15 Si 0.893 3.107 16 H -0.281 1.281 17 H -0.287 1.287 18 H -0.274 1.274 19 N -0.528 5.528 20 C 0.056 3.944 21 C -0.118 4.118 22 C -0.120 4.120 23 C -0.119 4.119 24 C 0.051 3.949 25 H 0.062 0.938 26 H 0.059 0.941 27 H 0.055 0.945 28 H 0.069 0.931 29 H 0.070 0.930 30 H 0.057 0.943 31 H 0.076 0.924 32 H 0.394 0.606 33 H 0.078 0.922 34 H 0.077 0.923 35 H 0.023 0.977 36 H 0.023 0.977 37 H 0.260 0.740 38 H 0.073 0.927 39 H 0.032 0.968 40 H 0.073 0.927 41 H 0.064 0.936 42 H 0.055 0.945 43 H 0.062 0.938 44 H 0.064 0.936 45 H 0.073 0.927 46 H 0.034 0.966 47 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.044 2.558 14.070 27.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.025 4.025 3 H 0.104 0.896 4 C -0.160 4.160 5 C 0.003 3.997 6 N -0.401 5.401 7 C 0.296 3.704 8 O -0.411 6.411 9 C -0.170 4.170 10 C -0.001 4.001 11 C -0.564 4.564 12 H 0.074 0.926 13 C -0.144 4.144 14 N -0.529 5.529 15 Si 0.720 3.280 16 H -0.207 1.207 17 H -0.212 1.212 18 H -0.199 1.199 19 N -0.252 5.252 20 C -0.072 4.072 21 C -0.156 4.156 22 C -0.158 4.158 23 C -0.157 4.157 24 C -0.076 4.076 25 H 0.081 0.919 26 H 0.078 0.922 27 H 0.074 0.926 28 H 0.088 0.912 29 H 0.089 0.911 30 H 0.075 0.925 31 H 0.094 0.906 32 H 0.227 0.773 33 H 0.096 0.904 34 H 0.096 0.904 35 H 0.041 0.959 36 H 0.042 0.958 37 H 0.070 0.930 38 H 0.092 0.908 39 H 0.050 0.950 40 H 0.092 0.908 41 H 0.082 0.918 42 H 0.074 0.926 43 H 0.081 0.919 44 H 0.082 0.918 45 H 0.092 0.908 46 H 0.052 0.948 47 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -22.741 2.927 14.627 27.197 hybrid contribution -0.885 -0.533 -1.031 1.459 sum -23.626 2.393 13.596 27.364 Atomic orbital electron populations 1.22459 0.97380 1.02314 1.02242 1.21644 0.92503 0.98452 0.89909 0.89633 1.21859 0.95827 1.01261 0.97046 1.21160 0.92428 0.97428 0.88727 1.46243 1.08082 1.58881 1.26886 1.21499 0.81120 0.79699 0.88095 1.90667 1.55241 1.45678 1.49487 1.21853 1.02498 0.99386 0.93292 1.18893 0.85994 0.98083 0.97105 1.21241 0.91982 1.35077 1.08145 0.92648 1.25031 0.97070 0.95697 0.96649 1.70002 1.02260 1.44039 1.36559 0.86596 0.78186 0.79861 0.83324 1.20705 1.21243 1.19917 1.62103 1.58527 1.02621 1.01969 1.22076 0.98111 0.97025 0.89989 1.21592 1.01419 0.95796 0.96808 1.21563 1.00390 0.96062 0.97767 1.21601 1.02185 0.97900 0.94023 1.22150 0.96123 0.90087 0.99277 0.91902 0.92172 0.92588 0.91245 0.91095 0.92454 0.90599 0.77319 0.90407 0.90427 0.95869 0.95826 0.92988 0.90806 0.95014 0.90805 0.91777 0.92623 0.91916 0.91754 0.90820 0.94787 0.90460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.26 8.44 37.16 0.31 -0.95 16 2 C 0.08 0.70 2.31 -67.72 -0.16 0.54 16 3 H 0.09 0.74 7.98 -51.93 -0.41 0.33 16 4 C -0.12 -1.10 4.72 -26.73 -0.13 -1.22 16 5 C 0.13 1.66 5.56 -4.04 -0.02 1.64 16 6 N -0.75 -10.95 5.56 -60.29 -0.33 -11.29 16 7 C 0.51 10.24 7.83 -10.99 -0.09 10.15 16 8 O -0.54 -13.28 15.98 5.56 0.09 -13.20 16 9 C -0.13 -2.74 5.64 -27.88 -0.16 -2.89 16 10 C 0.04 1.02 4.26 -27.88 -0.12 0.90 16 11 C -0.53 -15.24 9.11 -34.44 -0.31 -15.55 16 12 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 13 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 14 N -0.89 -27.92 13.29 55.43 0.74 -27.18 16 15 Si 0.89 21.97 29.54 -169.99 -5.02 16.95 16 16 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 17 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 18 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 19 N -0.53 -4.82 4.02 -226.70 -0.91 -5.73 16 20 C 0.06 0.46 5.14 -3.83 -0.02 0.44 16 21 C -0.12 -0.94 6.09 -26.65 -0.16 -1.10 16 22 C -0.12 -0.91 6.00 -26.61 -0.16 -1.06 16 23 C -0.12 -0.99 6.09 -26.65 -0.16 -1.16 16 24 C 0.05 0.43 4.53 -3.84 -0.02 0.42 16 25 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.06 0.41 6.46 -51.93 -0.34 0.08 16 27 H 0.06 0.38 6.84 -51.93 -0.36 0.02 16 28 H 0.07 0.60 6.28 -51.93 -0.33 0.27 16 29 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 30 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.08 1.16 7.73 -51.93 -0.40 0.76 16 32 H 0.39 4.49 8.47 -40.82 -0.35 4.15 16 33 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 34 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 35 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 36 H 0.02 0.71 8.10 -51.93 -0.42 0.29 16 37 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 38 H 0.07 0.60 8.01 -51.93 -0.42 0.18 16 39 H 0.03 0.24 6.90 -51.93 -0.36 -0.12 16 40 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 43 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 44 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 45 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 46 H 0.03 0.27 6.57 -51.93 -0.34 -0.07 16 47 H 0.08 0.68 6.17 -51.93 -0.32 0.36 16 LS Contribution 364.09 15.07 5.49 5.49 Total: -1.00 -34.24 364.09 -9.89 -44.13 By element: Atomic # 1 Polarization: 7.73 SS G_CDS: -8.65 Total: -0.92 kcal Atomic # 6 Polarization: -6.98 SS G_CDS: -1.29 Total: -8.26 kcal Atomic # 7 Polarization: -43.69 SS G_CDS: -0.51 Total: -44.19 kcal Atomic # 8 Polarization: -13.28 SS G_CDS: 0.09 Total: -13.20 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -34.24 -9.89 -44.13 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360783319.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.085 kcal (2) G-P(sol) polarization free energy of solvation -34.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.130 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds