Wall clock time and date at job start Tue Mar 31 2020 05:59:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46898 * 109.46940 * 2 1 4 4 C 1.46902 * 110.99506 * 197.06842 * 3 2 1 5 5 C 1.52997 * 109.46919 * 66.05105 * 4 3 2 6 6 C 1.53786 * 113.61254 * 184.99603 * 5 4 3 7 7 C 1.53779 * 87.17139 * 220.05748 * 6 5 4 8 8 C 1.53775 * 87.08367 * 25.39019 * 7 6 5 9 9 C 1.46895 * 110.99769 * 73.11836 * 3 2 1 10 10 H 1.09002 * 109.46863 * 169.61269 * 9 3 2 11 11 C 1.52999 * 109.47527 * 49.61519 * 9 3 2 12 12 C 1.50700 * 109.47428 * 289.61197 * 9 3 2 13 13 O 1.21280 * 120.00021 * 132.29149 * 12 9 3 14 14 N 1.34778 * 119.99833 * 312.29441 * 12 9 3 15 15 C 1.46505 * 120.00126 * 3.80606 * 14 12 9 16 16 C 1.46499 * 119.99969 * 183.80462 * 14 12 9 17 17 C 1.50697 * 109.47221 * 89.99968 * 16 14 12 18 18 H 1.08004 * 119.99828 * 0.02562 * 17 16 14 19 19 C 1.37875 * 120.00287 * 179.97438 * 17 16 14 20 20 N 1.31516 * 119.99672 * 0.02562 * 19 17 16 21 21 Si 1.86793 * 120.00231 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47374 * 60.00086 * 21 19 17 23 23 H 1.48503 * 109.47555 * 180.02562 * 21 19 17 24 24 H 1.48504 * 109.47261 * 300.00025 * 21 19 17 25 25 H 1.09003 * 109.47211 * 171.00638 * 1 2 3 26 26 H 1.08998 * 109.47417 * 291.00763 * 1 2 3 27 27 H 1.08998 * 109.46945 * 51.01063 * 1 2 3 28 28 H 1.08999 * 109.47013 * 239.99388 * 2 1 3 29 29 H 1.09007 * 109.46924 * 120.00318 * 2 1 3 30 30 H 1.08994 * 109.47370 * 306.04467 * 4 3 2 31 31 H 1.09001 * 109.46829 * 186.04277 * 4 3 2 32 32 H 1.09001 * 112.90883 * 316.24435 * 5 4 3 33 33 H 1.09007 * 113.61448 * 105.46762 * 6 5 4 34 34 H 1.08998 * 113.61800 * 334.65313 * 6 5 4 35 35 H 1.09000 * 113.61124 * 139.94339 * 7 6 5 36 36 H 1.09004 * 113.61453 * 270.83933 * 7 6 5 37 37 H 1.09004 * 113.61610 * 89.11262 * 8 7 6 38 38 H 1.08998 * 113.61747 * 219.92990 * 8 7 6 39 39 H 1.09006 * 109.47216 * 52.82790 * 11 9 3 40 40 H 1.08998 * 109.47298 * 172.83184 * 11 9 3 41 41 H 1.08996 * 109.47143 * 292.82992 * 11 9 3 42 42 H 1.09000 * 109.46863 * 93.52827 * 15 14 12 43 43 H 1.08997 * 109.47192 * 213.52783 * 15 14 12 44 44 H 1.09002 * 109.46913 * 333.53008 * 15 14 12 45 45 H 1.08999 * 109.46831 * 209.99814 * 16 14 12 46 46 H 1.09004 * 109.47341 * 329.99683 * 16 14 12 47 47 H 0.97005 * 119.99740 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4312 1.4442 -0.4026 5 6 3.5632 1.0115 -1.8641 6 6 5.0193 0.9213 -2.3507 7 6 4.5355 1.5393 -3.6731 8 6 3.3835 2.1642 -2.8687 9 6 1.8196 2.0140 1.3123 10 1 2.3510 2.9652 1.3441 11 6 2.3589 1.0918 2.4075 12 6 0.3485 2.2528 1.5360 13 8 -0.1658 1.9282 2.5853 14 7 -0.3955 2.8269 0.5699 15 6 0.2063 3.1426 -0.7279 16 6 -1.8061 3.1352 0.8176 17 6 -1.9242 4.5263 1.3849 18 1 -1.0372 5.1214 1.5445 19 6 -3.1646 5.0397 1.6992 20 7 -4.2447 4.3152 1.5043 21 14 -3.3110 6.7643 2.4016 22 1 -2.7528 7.7423 1.4335 23 1 -4.7408 7.0769 2.6529 24 1 -2.5556 6.8449 3.6777 25 1 -0.3634 -1.0150 -0.1607 26 1 -0.3634 0.3684 0.9593 27 1 -0.3633 0.6466 -0.7988 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5139 0.8900 30 1 4.0173 0.7763 0.2286 31 1 3.7982 2.4645 -0.2912 32 1 2.9683 0.1294 -2.1008 33 1 5.3827 -0.1012 -2.4537 34 1 5.7057 1.5604 -1.7953 35 1 5.2252 2.2730 -4.0902 36 1 4.2069 0.8017 -4.4053 37 1 3.6216 3.1439 -2.4542 38 1 2.4267 2.1466 -3.3904 39 1 3.3880 0.8165 2.1766 40 1 2.3275 1.6093 3.3663 41 1 1.7453 0.1924 2.4599 42 1 0.0363 2.3162 -1.4179 43 1 -0.2476 4.0493 -1.1280 44 1 1.2781 3.2973 -0.6034 45 1 -2.3607 3.0764 -0.1189 46 1 -2.2157 2.4171 1.5281 47 1 -5.1174 4.6762 1.7257 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000361482384.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:30 Heat of formation + Delta-G solvation = 2.353278 kcal Electronic energy + Delta-G solvation = -24197.258206 eV Core-core repulsion = 20995.526137 eV Total energy + Delta-G solvation = -3201.732069 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.17740 -38.80017 -36.63842 -34.69357 -32.46480 -31.25664 -30.47818 -27.83544 -26.72939 -25.76106 -25.51844 -24.32976 -23.05011 -22.18704 -20.33189 -19.33805 -18.12623 -16.73121 -16.29030 -16.22613 -15.71124 -15.25578 -14.76135 -14.44830 -14.28595 -13.87914 -13.84822 -13.23488 -12.75782 -12.58682 -12.54947 -12.28962 -12.17129 -12.02137 -11.79247 -11.64503 -11.46361 -11.36781 -11.19678 -11.05826 -10.94199 -10.77977 -10.67117 -10.46044 -10.38546 -10.33458 -10.15057 -10.07402 -9.54669 -8.83382 -8.36948 -8.06984 -7.42595 -5.97630 -4.02221 3.35380 3.38359 3.39720 3.44294 3.99892 4.15144 4.50200 4.50998 4.58046 4.65151 4.80181 5.06527 5.14547 5.25062 5.33037 5.35134 5.37879 5.44395 5.49997 5.57069 5.62591 5.66221 5.71326 5.75573 5.83810 5.87377 5.97511 6.00224 6.08410 6.16243 6.17533 6.25553 6.37712 6.39459 6.43550 6.59494 6.78390 7.05527 7.12544 7.23682 7.54950 7.71709 8.00510 8.32338 8.62036 8.97851 9.25011 9.62945 11.10070 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.022043 B = 0.004542 C = 0.004223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1269.934303 B = 6162.886027 C = 6629.094113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.042 3.958 3 N -0.519 5.519 4 C 0.062 3.938 5 C -0.105 4.105 6 C -0.137 4.137 7 C -0.145 4.145 8 C -0.126 4.126 9 C 0.058 3.942 10 H 0.098 0.902 11 C -0.164 4.164 12 C 0.522 3.478 13 O -0.553 6.553 14 N -0.589 5.589 15 C 0.102 3.898 16 C 0.246 3.754 17 C -0.524 4.524 18 H 0.055 0.945 19 C 0.061 3.939 20 N -0.896 5.896 21 Si 0.897 3.103 22 H -0.277 1.277 23 H -0.287 1.287 24 H -0.277 1.277 25 H 0.050 0.950 26 H 0.070 0.930 27 H 0.070 0.930 28 H 0.072 0.928 29 H 0.042 0.958 30 H 0.035 0.965 31 H 0.075 0.925 32 H 0.092 0.908 33 H 0.062 0.938 34 H 0.078 0.922 35 H 0.063 0.937 36 H 0.076 0.924 37 H 0.080 0.920 38 H 0.068 0.932 39 H 0.053 0.947 40 H 0.068 0.932 41 H 0.066 0.934 42 H 0.046 0.954 43 H 0.050 0.950 44 H 0.070 0.930 45 H 0.029 0.971 46 H 0.041 0.959 47 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.029 -7.607 -8.996 21.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.085 4.085 3 N -0.244 5.244 4 C -0.066 4.066 5 C -0.123 4.123 6 C -0.175 4.175 7 C -0.183 4.183 8 C -0.163 4.163 9 C -0.053 4.053 10 H 0.116 0.884 11 C -0.223 4.223 12 C 0.308 3.692 13 O -0.432 6.432 14 N -0.319 5.319 15 C -0.042 4.042 16 C 0.126 3.874 17 C -0.563 4.563 18 H 0.073 0.927 19 C -0.141 4.141 20 N -0.535 5.535 21 Si 0.724 3.276 22 H -0.203 1.203 23 H -0.212 1.212 24 H -0.203 1.203 25 H 0.069 0.931 26 H 0.088 0.912 27 H 0.089 0.911 28 H 0.090 0.910 29 H 0.060 0.940 30 H 0.053 0.947 31 H 0.093 0.907 32 H 0.110 0.890 33 H 0.081 0.919 34 H 0.097 0.903 35 H 0.082 0.918 36 H 0.095 0.905 37 H 0.098 0.902 38 H 0.087 0.913 39 H 0.072 0.928 40 H 0.087 0.913 41 H 0.085 0.915 42 H 0.065 0.935 43 H 0.069 0.931 44 H 0.089 0.911 45 H 0.047 0.953 46 H 0.059 0.941 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 17.235 -7.488 -8.791 20.746 hybrid contribution 0.324 0.609 0.909 1.141 sum 17.559 -6.879 -7.882 20.439 Atomic orbital electron populations 1.22118 0.94386 1.01236 1.04391 1.22262 0.96741 0.88765 1.00735 1.62589 1.17829 1.17889 1.26055 1.22160 0.88481 1.00964 0.94955 1.22618 0.96351 0.99458 0.93891 1.22934 0.96495 1.00852 0.97264 1.22821 0.98799 1.00209 0.96463 1.22896 0.98568 0.97843 0.97042 1.21923 0.95932 0.98995 0.88470 0.88378 1.22125 0.99667 1.00973 0.99568 1.19879 0.87354 0.78023 0.83919 1.90675 1.72863 1.52978 1.26709 1.48020 1.13003 1.58180 1.12683 1.21667 0.98249 0.99193 0.85082 1.19222 0.74886 0.96257 0.97024 1.21421 0.92636 0.99782 1.42468 0.92650 1.24926 0.95656 0.97863 0.95656 1.69931 0.98068 1.37026 1.48453 0.86585 0.76900 0.84422 0.79646 1.20290 1.21229 1.20268 0.93120 0.91153 0.91063 0.90993 0.93960 0.94706 0.90697 0.88979 0.91918 0.90301 0.91788 0.90514 0.90167 0.91277 0.92843 0.91345 0.91474 0.93536 0.93110 0.91120 0.95251 0.94082 0.92769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.52 8.50 37.16 0.32 -2.20 16 2 C 0.04 0.53 5.24 -3.83 -0.02 0.51 16 3 N -0.52 -6.50 1.72 -228.04 -0.39 -6.89 16 4 C 0.06 0.61 4.47 -3.82 -0.02 0.60 16 5 C -0.10 -0.91 3.69 -89.71 -0.33 -1.25 16 6 C -0.14 -1.03 7.64 -25.92 -0.20 -1.23 16 7 C -0.15 -1.10 8.08 -25.92 -0.21 -1.31 16 8 C -0.13 -1.10 7.64 -25.83 -0.20 -1.30 16 9 C 0.06 0.89 1.83 -68.87 -0.13 0.76 16 10 H 0.10 1.42 7.77 -51.93 -0.40 1.02 16 11 C -0.16 -2.32 7.53 37.16 0.28 -2.04 16 12 C 0.52 10.90 4.31 -10.99 -0.05 10.85 16 13 O -0.55 -13.97 15.02 5.56 0.08 -13.89 16 14 N -0.59 -12.64 2.04 -182.95 -0.37 -13.01 16 15 C 0.10 1.75 8.71 59.85 0.52 2.27 16 16 C 0.25 6.54 5.21 -5.20 -0.03 6.52 16 17 C -0.52 -15.13 9.39 -34.44 -0.32 -15.45 16 18 H 0.06 1.59 7.81 -52.48 -0.41 1.18 16 19 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 20 N -0.90 -27.05 13.29 55.43 0.74 -26.31 16 21 Si 0.90 22.19 29.54 -169.99 -5.02 17.17 16 22 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 23 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 24 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 25 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.07 1.35 5.07 -51.93 -0.26 1.09 16 27 H 0.07 1.15 5.66 -51.93 -0.29 0.85 16 28 H 0.07 0.78 5.87 -51.93 -0.30 0.47 16 29 H 0.04 0.54 5.58 -51.92 -0.29 0.25 16 30 H 0.03 0.34 7.05 -51.93 -0.37 -0.03 16 31 H 0.07 0.72 7.58 -51.93 -0.39 0.33 16 32 H 0.09 0.85 6.14 -51.93 -0.32 0.53 16 33 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 34 H 0.08 0.57 8.10 -51.93 -0.42 0.15 16 35 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 36 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.08 0.71 7.90 -51.93 -0.41 0.30 16 38 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.05 0.61 6.84 -51.93 -0.36 0.25 16 40 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 41 H 0.07 1.02 6.42 -51.93 -0.33 0.69 16 42 H 0.05 0.74 6.26 -51.93 -0.32 0.41 16 43 H 0.05 0.91 8.10 -51.93 -0.42 0.49 16 44 H 0.07 1.06 5.82 -51.93 -0.30 0.76 16 45 H 0.03 0.80 8.07 -51.93 -0.42 0.38 16 46 H 0.04 1.23 7.37 -51.93 -0.38 0.85 16 47 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 LS Contribution 351.19 15.07 5.29 5.29 Total: -1.00 -31.87 351.19 -8.23 -40.11 By element: Atomic # 1 Polarization: 7.23 SS G_CDS: -8.08 Total: -0.85 kcal Atomic # 6 Polarization: -1.14 SS G_CDS: -0.48 Total: -1.61 kcal Atomic # 7 Polarization: -46.18 SS G_CDS: -0.03 Total: -46.21 kcal Atomic # 8 Polarization: -13.97 SS G_CDS: 0.08 Total: -13.89 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.17 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -31.87 -8.23 -40.11 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361482384.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.459 kcal (2) G-P(sol) polarization free energy of solvation -31.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.106 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds