Wall clock time and date at job start Tue Mar 31 2020 05:59:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 N 1.46900 * 109.47026 * 2 1 4 4 C 1.46898 * 110.99689 * 192.10219 * 3 2 1 5 5 C 1.53003 * 109.47641 * 66.04442 * 4 3 2 6 6 C 1.53777 * 113.60981 * 274.13670 * 5 4 3 7 7 C 1.53961 * 87.01825 * 220.04589 * 6 5 4 8 8 C 1.53773 * 113.61483 * 176.52730 * 5 4 3 9 9 C 1.46893 * 111.00410 * 68.14341 * 3 2 1 10 10 H 1.08997 * 109.47167 * 316.85366 * 9 3 2 11 11 C 1.53002 * 109.47014 * 76.85210 * 9 3 2 12 12 C 1.50700 * 109.47389 * 196.85313 * 9 3 2 13 13 O 1.21282 * 119.99619 * 344.47050 * 12 9 3 14 14 N 1.34779 * 119.99961 * 164.47809 * 12 9 3 15 15 C 1.46494 * 119.99972 * 359.97438 * 14 12 9 16 16 C 1.46504 * 119.99737 * 179.97438 * 14 12 9 17 17 C 1.50698 * 109.46990 * 89.99652 * 16 14 12 18 18 H 1.07999 * 120.00364 * 359.97438 * 17 16 14 19 19 C 1.37877 * 119.99957 * 179.97438 * 17 16 14 20 20 N 1.31515 * 120.00498 * 179.97438 * 19 17 16 21 21 Si 1.86803 * 119.99707 * 0.02562 * 19 17 16 22 22 H 1.48506 * 109.47269 * 90.00310 * 21 19 17 23 23 H 1.48502 * 109.47273 * 209.99940 * 21 19 17 24 24 H 1.48494 * 109.47264 * 330.00092 * 21 19 17 25 25 H 1.08992 * 109.47198 * 53.20409 * 1 2 3 26 26 H 1.08998 * 109.46862 * 173.20758 * 1 2 3 27 27 H 1.09001 * 109.46940 * 293.20510 * 1 2 3 28 28 H 1.09001 * 109.46526 * 240.00033 * 2 1 3 29 29 H 1.09000 * 109.47209 * 119.99689 * 2 1 3 30 30 H 1.09006 * 109.47018 * 186.04433 * 4 3 2 31 31 H 1.08999 * 109.47200 * 306.04159 * 4 3 2 32 32 H 1.08998 * 112.84625 * 45.33367 * 5 4 3 33 33 H 1.08994 * 113.61971 * 334.56514 * 6 5 4 34 34 H 1.09006 * 113.61399 * 105.47516 * 6 5 4 35 35 H 1.08999 * 113.53471 * 270.81332 * 7 6 5 36 36 H 1.09002 * 113.66754 * 139.93460 * 7 6 5 37 37 H 1.08994 * 113.61847 * 254.52722 * 8 5 4 38 38 H 1.09002 * 113.61784 * 25.34788 * 8 5 4 39 39 H 1.08997 * 109.47027 * 60.00070 * 11 9 3 40 40 H 1.09003 * 109.47039 * 180.02562 * 11 9 3 41 41 H 1.09005 * 109.46737 * 299.99897 * 11 9 3 42 42 H 1.09001 * 109.46977 * 90.00730 * 15 14 12 43 43 H 1.09001 * 109.46860 * 210.00383 * 15 14 12 44 44 H 1.08999 * 109.47321 * 330.00529 * 15 14 12 45 45 H 1.08997 * 109.46910 * 209.99566 * 16 14 12 46 46 H 1.09001 * 109.46811 * 329.99870 * 16 14 12 47 47 H 0.96993 * 120.00058 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4594 1.4343 -0.2875 5 6 3.7101 0.9596 -1.7203 6 6 3.8485 -0.5666 -1.8481 7 6 4.9809 -0.2987 -2.8563 8 6 5.1832 1.0530 -2.1514 9 6 1.7139 2.0516 1.2728 10 1 0.6957 1.8073 1.5754 11 6 2.6935 1.5742 2.3467 12 6 1.8430 3.5433 1.1024 13 8 2.4203 3.9955 0.1363 14 7 1.3172 4.3748 2.0235 15 6 0.6196 3.8285 3.1901 16 6 1.4433 5.8250 1.8581 17 6 0.2623 6.3465 1.0806 18 1 -0.5052 5.6657 0.7431 19 6 0.1616 7.6926 0.8002 20 7 -0.8687 8.1477 0.1213 21 14 1.4894 8.8700 1.3835 22 1 2.5414 8.9852 0.3416 23 1 0.8915 10.2062 1.6329 24 1 2.0911 8.3547 2.6395 25 1 -0.3633 0.6155 -0.8229 26 1 -0.3633 -1.0204 -0.1215 27 1 -0.3633 0.4049 0.9445 28 1 1.8933 -0.5139 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 3.8174 2.4579 -0.1761 31 1 3.9914 0.7856 0.4084 32 1 3.0164 1.3969 -2.4384 33 1 4.1851 -1.0527 -0.9325 34 1 2.9758 -1.0488 -2.2885 35 1 4.6345 -0.2068 -3.8857 36 1 5.8284 -0.9763 -2.7527 37 1 5.3864 1.8764 -2.8361 38 1 5.8853 1.0120 -1.3187 39 1 3.7117 1.8185 2.0441 40 1 2.4663 2.0685 3.2913 41 1 2.6000 0.4952 2.4700 42 1 1.3321 3.6756 4.0008 43 1 -0.1525 4.5274 3.5120 44 1 0.1602 2.8761 2.9257 45 1 1.4720 6.3013 2.8381 46 1 2.3624 6.0505 1.3174 47 1 -0.9397 9.0948 -0.0756 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000361482385.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:33 Heat of formation + Delta-G solvation = -2.376720 kcal Electronic energy + Delta-G solvation = -23801.173433 eV Core-core repulsion = 20599.236255 eV Total energy + Delta-G solvation = -3201.937177 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -40.05174 -38.72262 -36.72534 -34.82149 -32.59820 -31.62642 -30.32610 -28.29072 -26.79872 -25.97190 -25.76738 -24.27372 -22.89379 -22.17204 -20.02740 -19.35969 -18.22928 -16.95372 -16.83479 -16.06210 -15.59340 -15.06207 -14.72650 -14.46265 -14.22844 -13.99167 -13.83198 -13.43178 -13.05184 -12.82856 -12.48257 -12.39965 -12.27496 -12.10513 -12.04440 -11.92128 -11.70507 -11.49251 -11.46728 -11.40266 -11.02622 -10.83968 -10.74705 -10.50964 -10.47973 -10.14400 -10.04974 -9.92499 -9.47799 -8.82040 -8.54614 -8.00461 -7.61376 -6.04153 -4.02360 3.31699 3.37398 3.39411 3.40435 3.73079 4.18979 4.43243 4.64791 4.66603 4.76392 4.91981 4.98697 5.05211 5.18373 5.25473 5.28588 5.31924 5.44248 5.53847 5.54788 5.58166 5.65713 5.67972 5.72640 5.78863 5.83674 5.86276 5.94891 5.97224 5.99456 6.02728 6.07548 6.19611 6.23837 6.30488 6.40203 6.58613 6.72691 6.97252 7.22227 7.34157 7.42284 7.66115 8.33310 8.52620 8.99634 9.10370 9.56418 11.09443 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.018934 B = 0.004621 C = 0.004203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1478.483591 B = 6058.047965 C = 6660.905738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.041 3.959 3 N -0.512 5.512 4 C 0.062 3.938 5 C -0.099 4.099 6 C -0.141 4.141 7 C -0.142 4.142 8 C -0.136 4.136 9 C 0.060 3.940 10 H 0.102 0.898 11 C -0.180 4.180 12 C 0.516 3.484 13 O -0.524 6.524 14 N -0.599 5.599 15 C 0.083 3.917 16 C 0.217 3.783 17 C -0.526 4.526 18 H 0.074 0.926 19 C 0.072 3.928 20 N -0.898 5.898 21 Si 0.876 3.124 22 H -0.274 1.274 23 H -0.285 1.285 24 H -0.267 1.267 25 H 0.066 0.934 26 H 0.055 0.945 27 H 0.051 0.949 28 H 0.085 0.915 29 H 0.029 0.971 30 H 0.097 0.903 31 H 0.027 0.973 32 H 0.099 0.901 33 H 0.075 0.925 34 H 0.066 0.934 35 H 0.078 0.922 36 H 0.062 0.938 37 H 0.067 0.933 38 H 0.076 0.924 39 H 0.064 0.936 40 H 0.068 0.932 41 H 0.061 0.939 42 H 0.044 0.956 43 H 0.075 0.925 44 H 0.058 0.942 45 H 0.028 0.972 46 H 0.035 0.965 47 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.231 -19.062 2.913 20.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.087 4.087 3 N -0.235 5.235 4 C -0.066 4.066 5 C -0.117 4.117 6 C -0.179 4.179 7 C -0.179 4.179 8 C -0.174 4.174 9 C -0.052 4.052 10 H 0.120 0.880 11 C -0.239 4.239 12 C 0.302 3.698 13 O -0.399 6.399 14 N -0.332 5.332 15 C -0.061 4.061 16 C 0.097 3.903 17 C -0.564 4.564 18 H 0.092 0.908 19 C -0.130 4.130 20 N -0.537 5.537 21 Si 0.703 3.297 22 H -0.199 1.199 23 H -0.211 1.211 24 H -0.191 1.191 25 H 0.086 0.914 26 H 0.074 0.926 27 H 0.070 0.930 28 H 0.103 0.897 29 H 0.047 0.953 30 H 0.115 0.885 31 H 0.045 0.955 32 H 0.117 0.883 33 H 0.093 0.907 34 H 0.084 0.916 35 H 0.097 0.903 36 H 0.081 0.919 37 H 0.086 0.914 38 H 0.095 0.905 39 H 0.083 0.917 40 H 0.087 0.913 41 H 0.080 0.920 42 H 0.062 0.938 43 H 0.094 0.906 44 H 0.077 0.923 45 H 0.046 0.954 46 H 0.053 0.947 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 8.207 -18.374 1.949 20.217 hybrid contribution 0.781 0.301 0.994 1.300 sum 8.988 -18.073 2.943 20.398 Atomic orbital electron populations 1.21834 0.95210 1.01262 1.02579 1.22328 0.95955 0.89284 1.01085 1.61865 1.16143 1.15086 1.30434 1.22280 0.87177 1.02621 0.94483 1.22518 0.96774 0.94880 0.97570 1.23136 0.98442 0.97066 0.99231 1.22832 0.98712 0.97678 0.98714 1.22883 0.96855 0.97478 1.00167 1.21704 1.00699 0.93321 0.89453 0.88035 1.22376 1.00516 1.01388 0.99598 1.20104 0.79495 0.87514 0.82683 1.90617 1.42616 1.77524 1.29168 1.47808 1.54853 1.08138 1.22422 1.21698 0.96890 0.99331 0.88184 1.19627 0.98422 0.75454 0.96824 1.21344 1.06699 0.93666 1.34734 0.90751 1.24856 0.95491 0.98039 0.94632 1.69899 1.29574 1.14528 1.39704 0.86858 0.82463 0.80605 0.79780 1.19939 1.21124 1.19134 0.91447 0.92601 0.93012 0.89657 0.95295 0.88494 0.95467 0.88317 0.90667 0.91571 0.90347 0.91933 0.91397 0.90488 0.91738 0.91302 0.92049 0.93768 0.90614 0.92289 0.95404 0.94668 0.92629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.72 9.77 37.16 0.36 -1.36 16 2 C 0.04 0.48 5.32 -3.82 -0.02 0.46 16 3 N -0.51 -7.69 4.18 -228.04 -0.95 -8.64 16 4 C 0.06 0.88 3.35 -3.82 -0.01 0.87 16 5 C -0.10 -1.25 3.52 -89.81 -0.32 -1.57 16 6 C -0.14 -1.42 5.71 -25.83 -0.15 -1.56 16 7 C -0.14 -1.35 8.09 -25.82 -0.21 -1.56 16 8 C -0.14 -1.52 7.65 -25.92 -0.20 -1.72 16 9 C 0.06 0.92 1.80 -68.87 -0.12 0.80 16 10 H 0.10 1.46 4.57 -51.93 -0.24 1.22 16 11 C -0.18 -2.21 8.21 37.16 0.31 -1.90 16 12 C 0.52 10.68 6.81 -10.98 -0.07 10.60 16 13 O -0.52 -12.96 13.95 5.56 0.08 -12.88 16 14 N -0.60 -12.50 2.86 -182.96 -0.52 -13.02 16 15 C 0.08 1.29 9.32 59.84 0.56 1.85 16 16 C 0.22 5.40 4.23 -5.19 -0.02 5.38 16 17 C -0.53 -15.38 9.94 -34.44 -0.34 -15.72 16 18 H 0.07 2.40 8.06 -52.49 -0.42 1.97 16 19 C 0.07 2.13 5.47 -17.82 -0.10 2.03 16 20 N -0.90 -28.12 13.96 55.43 0.77 -27.35 16 21 Si 0.88 21.86 27.47 -169.99 -4.67 17.19 16 22 H -0.27 -6.88 7.11 56.52 0.40 -6.48 16 23 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 24 H -0.27 -6.25 6.54 56.52 0.37 -5.88 16 25 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 26 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.05 0.58 6.63 -51.93 -0.34 0.24 16 28 H 0.09 0.94 4.49 -51.93 -0.23 0.71 16 29 H 0.03 0.31 6.74 -51.93 -0.35 -0.04 16 30 H 0.10 1.71 5.94 -51.93 -0.31 1.40 16 31 H 0.03 0.35 6.59 -51.93 -0.34 0.01 16 32 H 0.10 1.44 8.14 -51.93 -0.42 1.02 16 33 H 0.07 0.71 7.92 -51.93 -0.41 0.30 16 34 H 0.07 0.63 7.24 -51.93 -0.38 0.26 16 35 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.08 0.82 8.10 -51.93 -0.42 0.40 16 39 H 0.06 0.84 6.54 -51.93 -0.34 0.50 16 40 H 0.07 0.79 6.38 -51.93 -0.33 0.45 16 41 H 0.06 0.64 6.87 -51.93 -0.36 0.28 16 42 H 0.04 0.57 7.41 -51.93 -0.38 0.18 16 43 H 0.08 1.22 8.07 -51.93 -0.42 0.80 16 44 H 0.06 0.77 6.04 -51.93 -0.31 0.46 16 45 H 0.03 0.66 7.13 -51.93 -0.37 0.29 16 46 H 0.04 0.93 6.85 -51.93 -0.36 0.58 16 47 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 LS Contribution 351.06 15.07 5.29 5.29 Total: -1.00 -33.67 351.06 -8.36 -42.03 By element: Atomic # 1 Polarization: 8.80 SS G_CDS: -8.02 Total: 0.78 kcal Atomic # 6 Polarization: -3.06 SS G_CDS: -0.34 Total: -3.40 kcal Atomic # 7 Polarization: -48.30 SS G_CDS: -0.70 Total: -49.00 kcal Atomic # 8 Polarization: -12.96 SS G_CDS: 0.08 Total: -12.88 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -4.67 Total: 17.19 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -33.67 -8.36 -42.03 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361482385.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.651 kcal (2) G-P(sol) polarization free energy of solvation -33.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds