Wall clock time and date at job start Tue Mar 31 2020 05:59:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 N 1.46900 * 109.47026 * 2 1 4 4 C 1.46898 * 110.99689 * 192.10219 * 3 2 1 5 5 C 1.53003 * 109.47641 * 66.04442 * 4 3 2 6 6 C 1.53777 * 113.60981 * 274.13670 * 5 4 3 7 7 C 1.53961 * 87.01825 * 220.04589 * 6 5 4 8 8 C 1.53773 * 113.61483 * 176.52730 * 5 4 3 9 9 C 1.46893 * 111.00410 * 68.14341 * 3 2 1 10 10 H 1.08997 * 109.47167 * 316.85366 * 9 3 2 11 11 C 1.53002 * 109.47014 * 76.85210 * 9 3 2 12 12 C 1.50700 * 109.47389 * 196.85313 * 9 3 2 13 13 O 1.21282 * 119.99619 * 344.47050 * 12 9 3 14 14 N 1.34779 * 119.99961 * 164.47809 * 12 9 3 15 15 C 1.46494 * 119.99972 * 359.97438 * 14 12 9 16 16 C 1.46504 * 119.99737 * 179.97438 * 14 12 9 17 17 C 1.50698 * 109.46990 * 89.99652 * 16 14 12 18 18 H 1.07999 * 120.00364 * 359.97438 * 17 16 14 19 19 C 1.37877 * 119.99957 * 179.97438 * 17 16 14 20 20 N 1.31515 * 120.00498 * 179.97438 * 19 17 16 21 21 Si 1.86803 * 119.99707 * 0.02562 * 19 17 16 22 22 H 1.48506 * 109.47269 * 90.00310 * 21 19 17 23 23 H 1.48502 * 109.47273 * 209.99940 * 21 19 17 24 24 H 1.48494 * 109.47264 * 330.00092 * 21 19 17 25 25 H 1.08992 * 109.47198 * 53.20409 * 1 2 3 26 26 H 1.08998 * 109.46862 * 173.20758 * 1 2 3 27 27 H 1.09001 * 109.46940 * 293.20510 * 1 2 3 28 28 H 1.09001 * 109.46526 * 240.00033 * 2 1 3 29 29 H 1.09000 * 109.47209 * 119.99689 * 2 1 3 30 30 H 1.09006 * 109.47018 * 186.04433 * 4 3 2 31 31 H 1.08999 * 109.47200 * 306.04159 * 4 3 2 32 32 H 1.08998 * 112.84625 * 45.33367 * 5 4 3 33 33 H 1.08994 * 113.61971 * 334.56514 * 6 5 4 34 34 H 1.09006 * 113.61399 * 105.47516 * 6 5 4 35 35 H 1.08999 * 113.53471 * 270.81332 * 7 6 5 36 36 H 1.09002 * 113.66754 * 139.93460 * 7 6 5 37 37 H 1.08994 * 113.61847 * 254.52722 * 8 5 4 38 38 H 1.09002 * 113.61784 * 25.34788 * 8 5 4 39 39 H 1.08997 * 109.47027 * 60.00070 * 11 9 3 40 40 H 1.09003 * 109.47039 * 180.02562 * 11 9 3 41 41 H 1.09005 * 109.46737 * 299.99897 * 11 9 3 42 42 H 1.09001 * 109.46977 * 90.00730 * 15 14 12 43 43 H 1.09001 * 109.46860 * 210.00383 * 15 14 12 44 44 H 1.08999 * 109.47321 * 330.00529 * 15 14 12 45 45 H 1.08997 * 109.46910 * 209.99566 * 16 14 12 46 46 H 1.09001 * 109.46811 * 329.99870 * 16 14 12 47 47 H 0.96993 * 120.00058 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4594 1.4343 -0.2875 5 6 3.7101 0.9596 -1.7203 6 6 3.8485 -0.5666 -1.8481 7 6 4.9809 -0.2987 -2.8563 8 6 5.1832 1.0530 -2.1514 9 6 1.7139 2.0516 1.2728 10 1 0.6957 1.8073 1.5754 11 6 2.6935 1.5742 2.3467 12 6 1.8430 3.5433 1.1024 13 8 2.4203 3.9955 0.1363 14 7 1.3172 4.3748 2.0235 15 6 0.6196 3.8285 3.1901 16 6 1.4433 5.8250 1.8581 17 6 0.2623 6.3465 1.0806 18 1 -0.5052 5.6657 0.7431 19 6 0.1616 7.6926 0.8002 20 7 -0.8687 8.1477 0.1213 21 14 1.4894 8.8700 1.3835 22 1 2.5414 8.9852 0.3416 23 1 0.8915 10.2062 1.6329 24 1 2.0911 8.3547 2.6395 25 1 -0.3633 0.6155 -0.8229 26 1 -0.3633 -1.0204 -0.1215 27 1 -0.3633 0.4049 0.9445 28 1 1.8933 -0.5139 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 3.8174 2.4579 -0.1761 31 1 3.9914 0.7856 0.4084 32 1 3.0164 1.3969 -2.4384 33 1 4.1851 -1.0527 -0.9325 34 1 2.9758 -1.0488 -2.2885 35 1 4.6345 -0.2068 -3.8857 36 1 5.8284 -0.9763 -2.7527 37 1 5.3864 1.8764 -2.8361 38 1 5.8853 1.0120 -1.3187 39 1 3.7117 1.8185 2.0441 40 1 2.4663 2.0685 3.2913 41 1 2.6000 0.4952 2.4700 42 1 1.3321 3.6756 4.0008 43 1 -0.1525 4.5274 3.5120 44 1 0.1602 2.8761 2.9257 45 1 1.4720 6.3013 2.8381 46 1 2.3624 6.0505 1.3174 47 1 -0.9397 9.0948 -0.0756 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000361482385.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:32 Heat of formation + Delta-G solvation = -25.359985 kcal Electronic energy + Delta-G solvation = -23802.170062 eV Core-core repulsion = 20599.236255 eV Total energy + Delta-G solvation = -3202.933807 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.34116 -39.89963 -37.89278 -36.54382 -34.73209 -32.78882 -31.48079 -30.10111 -27.81707 -27.37947 -26.64158 -25.71539 -23.97666 -23.71289 -21.31316 -20.26398 -19.63977 -19.13410 -18.23449 -17.39533 -16.67592 -16.55979 -16.35095 -15.59847 -15.53865 -15.29521 -15.11239 -14.67205 -14.41739 -14.19926 -14.00085 -13.64430 -13.30700 -13.30407 -13.26807 -13.17030 -13.12542 -12.82424 -12.62152 -12.46992 -12.42628 -12.41754 -12.12586 -11.94100 -11.73936 -11.66994 -11.40023 -11.01556 -10.87147 -10.83160 -10.36644 -9.36465 -9.07114 -8.34022 -6.38929 1.31246 1.35972 1.44281 1.85877 2.28878 2.30830 3.00193 3.02822 3.67756 3.75522 3.78593 3.91225 3.99889 4.04987 4.08083 4.29151 4.34621 4.41652 4.45662 4.59834 4.63137 4.66330 4.71055 4.79547 4.84291 4.86103 4.86849 4.93226 4.95457 4.99368 5.02994 5.06372 5.08773 5.09882 5.18571 5.26141 5.37040 5.44949 5.46636 5.64146 5.66347 6.11635 6.25956 6.32615 6.62458 6.77020 7.22329 7.51657 8.83353 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.018934 B = 0.004621 C = 0.004203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1478.483591 B = 6058.047965 C = 6660.905738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.044 3.956 3 N -0.541 5.541 4 C 0.070 3.930 5 C -0.110 4.110 6 C -0.127 4.127 7 C -0.133 4.133 8 C -0.139 4.139 9 C 0.071 3.929 10 H 0.114 0.886 11 C -0.171 4.171 12 C 0.503 3.497 13 O -0.578 6.578 14 N -0.609 5.609 15 C 0.077 3.923 16 C 0.226 3.774 17 C -0.535 4.535 18 H 0.025 0.975 19 C 0.010 3.990 20 N -0.947 5.947 21 Si 0.950 3.050 22 H -0.278 1.278 23 H -0.274 1.274 24 H -0.237 1.237 25 H 0.039 0.961 26 H 0.081 0.919 27 H 0.052 0.948 28 H 0.093 0.907 29 H 0.052 0.948 30 H 0.055 0.945 31 H 0.049 0.951 32 H 0.067 0.933 33 H 0.090 0.910 34 H 0.072 0.928 35 H 0.078 0.922 36 H 0.081 0.919 37 H 0.054 0.946 38 H 0.085 0.915 39 H 0.053 0.947 40 H 0.081 0.919 41 H 0.091 0.909 42 H 0.081 0.919 43 H 0.065 0.935 44 H 0.084 0.916 45 H 0.050 0.950 46 H 0.016 0.984 47 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.716 -21.454 5.161 24.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.083 4.083 3 N -0.266 5.266 4 C -0.057 4.057 5 C -0.129 4.129 6 C -0.164 4.164 7 C -0.170 4.170 8 C -0.177 4.177 9 C -0.040 4.040 10 H 0.132 0.868 11 C -0.229 4.229 12 C 0.291 3.709 13 O -0.457 6.457 14 N -0.341 5.341 15 C -0.066 4.066 16 C 0.104 3.896 17 C -0.573 4.573 18 H 0.043 0.957 19 C -0.188 4.188 20 N -0.587 5.587 21 Si 0.772 3.228 22 H -0.204 1.204 23 H -0.199 1.199 24 H -0.160 1.160 25 H 0.058 0.942 26 H 0.100 0.900 27 H 0.071 0.929 28 H 0.111 0.889 29 H 0.070 0.930 30 H 0.073 0.927 31 H 0.067 0.933 32 H 0.086 0.914 33 H 0.109 0.891 34 H 0.091 0.909 35 H 0.097 0.903 36 H 0.100 0.900 37 H 0.073 0.927 38 H 0.103 0.897 39 H 0.072 0.928 40 H 0.100 0.900 41 H 0.109 0.891 42 H 0.100 0.900 43 H 0.084 0.916 44 H 0.103 0.897 45 H 0.068 0.932 46 H 0.034 0.966 47 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 9.672 -20.814 4.240 23.339 hybrid contribution 0.221 1.017 0.222 1.064 sum 9.893 -19.797 4.462 22.576 Atomic orbital electron populations 1.21840 0.95115 1.02336 1.01475 1.22398 0.95948 0.87437 1.02518 1.61787 1.16718 1.17313 1.30747 1.22123 0.87115 1.00600 0.95849 1.22494 0.97059 0.97338 0.95973 1.23067 0.98840 0.94468 0.99993 1.22795 0.99170 0.96527 0.98501 1.22931 0.95978 0.98366 1.00469 1.21615 1.02333 0.89156 0.90936 0.86836 1.22327 0.98778 1.03228 0.98604 1.21241 0.78130 0.89966 0.81546 1.90589 1.44873 1.78936 1.31299 1.47942 1.55297 1.06679 1.24207 1.22008 0.97387 0.99918 0.87237 1.19282 0.95253 0.78499 0.96599 1.21571 1.07089 0.93367 1.35305 0.95681 1.25872 0.98107 1.00160 0.94633 1.70057 1.32001 1.15300 1.41359 0.85693 0.78762 0.78111 0.80220 1.20375 1.19860 1.15989 0.94196 0.89977 0.92916 0.88904 0.92960 0.92663 0.93348 0.91406 0.89133 0.90897 0.90304 0.90049 0.92743 0.89689 0.92752 0.90031 0.89059 0.90018 0.91607 0.89731 0.93196 0.96627 0.92295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.13 9.77 71.98 0.70 -2.43 16 2 C 0.04 0.92 5.32 86.31 0.46 1.38 16 3 N -0.54 -15.96 4.18 -875.37 -3.66 -19.62 16 4 C 0.07 2.01 3.35 86.30 0.29 2.30 16 5 C -0.11 -2.79 3.52 -10.27 -0.04 -2.83 16 6 C -0.13 -2.25 5.71 31.18 0.18 -2.07 16 7 C -0.13 -2.28 8.09 31.18 0.25 -2.03 16 8 C -0.14 -3.08 7.65 31.12 0.24 -2.85 16 9 C 0.07 2.10 1.80 44.17 0.08 2.18 16 10 H 0.11 3.03 4.57 -2.39 -0.01 3.02 16 11 C -0.17 -3.65 8.21 71.98 0.59 -3.06 16 12 C 0.50 21.17 6.81 87.66 0.60 21.76 16 13 O -0.58 -30.15 13.95 -3.04 -0.04 -30.19 16 14 N -0.61 -25.38 2.86 -851.14 -2.43 -27.82 16 15 C 0.08 2.22 9.32 127.77 1.19 3.41 16 16 C 0.23 11.34 4.23 85.63 0.36 11.70 16 17 C -0.53 -32.51 9.94 25.60 0.25 -32.25 16 18 H 0.02 1.71 8.06 -2.91 -0.02 1.69 16 19 C 0.01 0.60 5.47 84.65 0.46 1.07 16 20 N -0.95 -61.40 13.96 21.45 0.30 -61.10 16 21 Si 0.95 45.54 27.47 68.60 1.88 47.42 16 22 H -0.28 -13.46 7.11 99.48 0.71 -12.76 16 23 H -0.27 -12.50 7.11 99.48 0.71 -11.80 16 24 H -0.24 -10.14 6.54 99.48 0.65 -9.49 16 25 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 26 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 27 H 0.05 1.07 6.63 -2.39 -0.02 1.06 16 28 H 0.09 1.81 4.49 -2.39 -0.01 1.80 16 29 H 0.05 0.88 6.74 -2.39 -0.02 0.87 16 30 H 0.05 2.05 5.94 -2.38 -0.01 2.03 16 31 H 0.05 1.14 6.59 -2.39 -0.02 1.12 16 32 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 33 H 0.09 1.37 7.92 -2.39 -0.02 1.35 16 34 H 0.07 1.21 7.24 -2.38 -0.02 1.20 16 35 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 36 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 37 H 0.05 1.31 8.14 -2.39 -0.02 1.30 16 38 H 0.08 1.73 8.10 -2.39 -0.02 1.71 16 39 H 0.05 1.29 6.54 -2.39 -0.02 1.28 16 40 H 0.08 1.54 6.38 -2.39 -0.02 1.52 16 41 H 0.09 1.44 6.87 -2.38 -0.02 1.42 16 42 H 0.08 1.79 7.41 -2.39 -0.02 1.77 16 43 H 0.07 2.04 8.07 -2.39 -0.02 2.02 16 44 H 0.08 2.00 6.04 -2.39 -0.01 1.98 16 45 H 0.05 2.28 7.13 -2.39 -0.02 2.26 16 46 H 0.02 0.84 6.85 -2.39 -0.02 0.83 16 47 H 0.27 16.11 8.31 -92.71 -0.77 15.34 16 Total: -1.00 -79.23 351.06 2.55 -76.67 By element: Atomic # 1 Polarization: 17.45 SS G_CDS: 0.88 Total: 18.33 kcal Atomic # 6 Polarization: -9.33 SS G_CDS: 5.62 Total: -3.71 kcal Atomic # 7 Polarization: -102.74 SS G_CDS: -5.79 Total: -108.53 kcal Atomic # 8 Polarization: -30.15 SS G_CDS: -0.04 Total: -30.19 kcal Atomic # 14 Polarization: 45.54 SS G_CDS: 1.88 Total: 47.42 kcal Total: -79.23 2.55 -76.67 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361482385.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.315 kcal (2) G-P(sol) polarization free energy of solvation -79.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.675 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds