Wall clock time and date at job start Tue Mar 31 2020 05:20:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09003 * 109.47411 * 2 1 4 4 C 1.53002 * 109.46595 * 240.00604 * 2 1 3 5 5 C 1.53117 * 109.52133 * 179.68339 * 4 2 1 6 6 C 1.53035 * 109.27969 * 182.44045 * 5 4 2 7 7 N 1.46849 * 109.52322 * 59.18228 * 6 5 4 8 8 C 1.46899 * 111.00033 * 174.16399 * 7 6 5 9 9 C 1.46843 * 111.19500 * 298.25635 * 7 6 5 10 10 C 1.53034 * 109.52573 * 61.74135 * 9 7 6 11 11 N 1.46496 * 109.47487 * 120.00716 * 2 1 3 12 12 C 1.46506 * 119.99759 * 59.99455 * 11 2 1 13 13 C 1.34771 * 120.00157 * 239.99783 * 11 2 1 14 14 O 1.21283 * 120.00062 * 0.02562 * 13 11 2 15 15 C 1.50700 * 120.00216 * 179.97438 * 13 11 2 16 16 C 1.52999 * 109.47172 * 179.97438 * 15 13 11 17 17 C 1.50706 * 109.46844 * 180.02562 * 16 15 13 18 18 H 1.07992 * 120.00404 * 359.97438 * 17 16 15 19 19 C 1.37880 * 119.99867 * 180.02562 * 17 16 15 20 20 N 1.31508 * 119.99990 * 180.02562 * 19 17 16 21 21 Si 1.86800 * 119.99712 * 359.97438 * 19 17 16 22 22 H 1.48503 * 109.46851 * 90.00602 * 21 19 17 23 23 H 1.48498 * 109.47028 * 209.99935 * 21 19 17 24 24 H 1.48495 * 109.47776 * 330.00332 * 21 19 17 25 25 H 1.08998 * 109.47314 * 59.99314 * 1 2 3 26 26 H 1.08993 * 109.47015 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.46385 * 299.99595 * 1 2 3 28 28 H 1.08994 * 109.52728 * 299.87199 * 4 2 1 29 29 H 1.09006 * 109.50292 * 302.38137 * 5 4 2 30 30 H 1.08997 * 109.50832 * 62.49772 * 5 4 2 31 31 H 1.08991 * 109.46453 * 299.15977 * 6 5 4 32 32 H 1.09006 * 109.46619 * 179.19100 * 6 5 4 33 33 H 1.08996 * 109.47216 * 184.20649 * 8 7 6 34 34 H 1.09005 * 109.47032 * 304.20445 * 8 7 6 35 35 H 1.08998 * 109.47530 * 64.20756 * 8 7 6 36 36 H 1.09003 * 109.46450 * 301.72523 * 9 7 6 37 37 H 1.09004 * 109.46594 * 181.76081 * 9 7 6 38 38 H 1.08996 * 109.50781 * 180.87738 * 10 9 7 39 39 H 1.09002 * 109.53398 * 60.78116 * 10 9 7 40 40 H 1.09001 * 109.47060 * 90.00688 * 12 11 2 41 41 H 1.09004 * 109.47073 * 210.00177 * 12 11 2 42 42 H 1.09000 * 109.47212 * 330.00260 * 12 11 2 43 43 H 1.09000 * 109.47357 * 300.00116 * 15 13 11 44 44 H 1.08998 * 109.46869 * 60.00030 * 15 13 11 45 45 H 1.09000 * 109.47535 * 299.99991 * 16 15 13 46 46 H 1.08998 * 109.47172 * 60.00248 * 16 15 13 47 47 H 0.97006 * 119.99712 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2494 5 6 3.5711 -0.7150 -1.2546 6 6 4.0746 -1.3835 -2.5358 7 7 3.5604 -0.6565 -3.7035 8 6 4.1345 -1.1856 -4.9479 9 6 2.0930 -0.6893 -3.7454 10 6 1.5302 -0.0002 -2.5003 11 7 2.0184 -0.6907 1.1960 12 6 1.6644 -2.0934 1.4277 13 6 2.7933 -0.0359 2.0832 14 8 3.0860 1.1254 1.8916 15 6 3.2953 -0.7462 3.3138 16 6 4.1460 0.2151 4.1463 17 6 4.6484 -0.4955 5.3767 18 1 4.3868 -1.5292 5.5479 19 6 5.4413 0.1744 6.2842 20 7 5.8801 -0.4459 7.3576 21 14 5.8932 1.9626 5.9883 22 1 4.8699 2.8411 6.6100 23 1 7.2202 2.2442 6.5924 24 1 5.9487 2.2241 4.5277 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3632 0.5138 0.8901 28 1 1.6789 -1.7496 -1.2492 29 1 3.9310 0.3132 -1.2150 30 1 3.9402 -1.2640 -0.3884 31 1 3.7260 -2.4156 -2.5681 32 1 5.1645 -1.3679 -2.5495 33 1 3.7953 -0.5823 -5.7898 34 1 5.2224 -1.1498 -4.8901 35 1 3.8118 -2.2174 -5.0870 36 1 1.7534 -1.7248 -3.7721 37 1 1.7433 -0.1697 -4.6375 38 1 0.4411 -0.0384 -2.5240 39 1 1.8574 1.0394 -2.4799 40 1 2.4157 -2.7379 0.9713 41 1 1.6239 -2.2855 2.4999 42 1 0.6904 -2.3003 0.9844 43 1 2.4474 -1.0885 3.9071 44 1 3.9006 -1.6028 3.0174 45 1 4.9940 0.5570 3.5529 46 1 3.5410 1.0719 4.4428 47 1 6.4383 0.0254 7.9959 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000362125302.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:21 Heat of formation + Delta-G solvation = -48.149626 kcal Electronic energy + Delta-G solvation = -23333.017771 eV Core-core repulsion = 20129.095732 eV Total energy + Delta-G solvation = -3203.922040 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.19662 -38.82431 -36.31472 -33.80075 -33.36416 -31.42791 -31.16129 -30.18797 -26.89280 -26.65346 -26.12740 -23.71627 -23.09952 -21.77600 -20.36207 -19.72668 -18.55770 -17.17733 -16.33395 -16.30087 -15.50114 -15.33427 -15.26027 -14.83374 -14.13344 -14.06793 -13.87985 -13.69357 -13.43297 -12.99905 -12.78374 -12.64586 -12.54425 -12.33524 -12.29144 -12.18980 -11.93868 -11.73615 -11.36858 -11.32676 -11.31993 -10.94176 -10.64439 -10.55045 -10.40779 -10.09985 -9.98717 -9.75033 -9.18089 -9.07680 -8.58638 -8.49165 -8.39939 -6.01099 -3.99533 3.14700 3.25161 3.39911 3.46410 3.57988 3.69709 4.47205 4.53191 4.61682 4.64561 4.89571 5.02548 5.08327 5.14549 5.15715 5.21589 5.27426 5.29397 5.34648 5.37253 5.38550 5.51008 5.52511 5.57167 5.58546 5.62667 5.72869 5.76124 5.83592 5.89792 5.99396 6.09300 6.11747 6.15921 6.17971 6.36760 6.69602 6.79905 6.83902 6.86040 7.40005 7.46968 7.68648 7.82296 8.52163 8.68506 9.02109 9.62320 11.11778 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.022944 B = 0.003737 C = 0.003524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1220.069844 B = 7490.566439 C = 7944.718273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.139 3.861 3 H 0.100 0.900 4 C -0.093 4.093 5 C -0.109 4.109 6 C 0.058 3.942 7 N -0.544 5.544 8 C 0.025 3.975 9 C 0.058 3.942 10 C -0.111 4.111 11 N -0.620 5.620 12 C 0.079 3.921 13 C 0.512 3.488 14 O -0.539 6.539 15 C -0.120 4.120 16 C 0.002 3.998 17 C -0.524 4.524 18 H 0.072 0.928 19 C 0.069 3.931 20 N -0.904 5.904 21 Si 0.877 3.123 22 H -0.277 1.277 23 H -0.288 1.288 24 H -0.261 1.261 25 H 0.066 0.934 26 H 0.056 0.944 27 H 0.059 0.941 28 H 0.067 0.933 29 H 0.073 0.927 30 H 0.069 0.931 31 H 0.030 0.970 32 H 0.074 0.926 33 H 0.067 0.933 34 H 0.068 0.932 35 H 0.022 0.978 36 H 0.030 0.970 37 H 0.073 0.927 38 H 0.070 0.930 39 H 0.074 0.926 40 H 0.051 0.949 41 H 0.077 0.923 42 H 0.065 0.935 43 H 0.084 0.916 44 H 0.084 0.916 45 H 0.023 0.977 46 H 0.018 0.982 47 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.707 -4.359 -23.614 26.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.035 3.965 3 H 0.118 0.882 4 C -0.113 4.113 5 C -0.146 4.146 6 C -0.070 4.070 7 N -0.269 5.269 8 C -0.123 4.123 9 C -0.070 4.070 10 C -0.150 4.150 11 N -0.355 5.355 12 C -0.064 4.064 13 C 0.302 3.698 14 O -0.415 6.415 15 C -0.160 4.160 16 C -0.036 4.036 17 C -0.562 4.562 18 H 0.090 0.910 19 C -0.132 4.132 20 N -0.543 5.543 21 Si 0.704 3.296 22 H -0.203 1.203 23 H -0.215 1.215 24 H -0.185 1.185 25 H 0.085 0.915 26 H 0.075 0.925 27 H 0.078 0.922 28 H 0.086 0.914 29 H 0.092 0.908 30 H 0.088 0.912 31 H 0.049 0.951 32 H 0.092 0.908 33 H 0.085 0.915 34 H 0.086 0.914 35 H 0.041 0.959 36 H 0.049 0.951 37 H 0.091 0.909 38 H 0.089 0.911 39 H 0.092 0.908 40 H 0.070 0.930 41 H 0.095 0.905 42 H 0.084 0.916 43 H 0.102 0.898 44 H 0.102 0.898 45 H 0.041 0.959 46 H 0.036 0.964 47 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -10.285 -3.224 -23.494 25.848 hybrid contribution -0.001 -0.179 -0.120 0.215 sum -10.286 -3.402 -23.614 25.980 Atomic orbital electron populations 1.22182 0.95451 1.01988 1.02365 1.21017 0.93470 0.98229 0.83758 0.88170 1.21517 0.96086 0.99525 0.94156 1.21570 0.94679 1.02269 0.96126 1.22109 0.99850 0.94745 0.90314 1.61920 1.06923 1.55401 1.02643 1.22345 1.00381 0.97524 0.92040 1.22073 0.87355 0.98819 0.98757 1.21675 0.99729 1.00564 0.92994 1.48018 1.52173 1.12405 1.22904 1.21723 1.00229 0.81835 1.02656 1.21526 0.76677 0.87089 0.84498 1.90636 1.57139 1.17309 1.76457 1.21681 1.01023 1.00549 0.92730 1.19371 0.94916 0.94537 0.94801 1.21117 1.31108 0.99670 1.04269 0.90994 1.24969 0.95335 0.98168 0.94765 1.69913 1.35722 1.37113 1.11593 0.86801 0.77729 0.85551 0.79519 1.20259 1.21459 1.18492 0.91481 0.92500 0.92223 0.91431 0.90840 0.91226 0.95148 0.90762 0.91469 0.91365 0.95897 0.95134 0.90881 0.91140 0.90761 0.93012 0.90468 0.91588 0.89773 0.89779 0.95866 0.96355 0.92747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.58 8.82 37.16 0.33 -1.25 16 2 C 0.14 1.69 2.23 -67.93 -0.15 1.53 16 3 H 0.10 1.50 6.90 -51.93 -0.36 1.14 16 4 C -0.09 -0.96 1.70 -90.50 -0.15 -1.11 16 5 C -0.11 -1.30 5.18 -26.65 -0.14 -1.43 16 6 C 0.06 0.60 5.46 -3.83 -0.02 0.58 16 7 N -0.54 -5.44 4.91 -242.96 -1.19 -6.63 16 8 C 0.03 0.20 9.59 60.06 0.58 0.78 16 9 C 0.06 0.50 5.46 -3.84 -0.02 0.48 16 10 C -0.11 -0.99 4.95 -26.65 -0.13 -1.13 16 11 N -0.62 -8.57 2.06 -173.92 -0.36 -8.93 16 12 C 0.08 0.83 9.30 59.85 0.56 1.39 16 13 C 0.51 9.49 7.67 -10.99 -0.08 9.41 16 14 O -0.54 -12.06 15.31 5.55 0.09 -11.97 16 15 C -0.12 -2.37 4.19 -27.88 -0.12 -2.49 16 16 C 0.00 0.04 3.33 -27.88 -0.09 -0.05 16 17 C -0.52 -15.11 9.66 -34.44 -0.33 -15.44 16 18 H 0.07 2.16 7.99 -52.49 -0.42 1.74 16 19 C 0.07 2.05 5.47 -17.82 -0.10 1.96 16 20 N -0.90 -28.23 13.96 55.43 0.77 -27.45 16 21 Si 0.88 22.85 27.47 -169.99 -4.67 18.18 16 22 H -0.28 -7.10 7.11 56.52 0.40 -6.70 16 23 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 24 H -0.26 -6.78 6.54 56.52 0.37 -6.41 16 25 H 0.07 0.55 6.49 -51.93 -0.34 0.21 16 26 H 0.06 0.48 6.66 -51.93 -0.35 0.13 16 27 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 28 H 0.07 0.65 7.67 -51.93 -0.40 0.25 16 29 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 30 H 0.07 0.91 7.70 -51.93 -0.40 0.51 16 31 H 0.03 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.07 0.77 8.09 -51.93 -0.42 0.35 16 33 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.07 0.52 8.09 -51.93 -0.42 0.10 16 35 H 0.02 0.17 8.14 -51.93 -0.42 -0.25 16 36 H 0.03 0.26 8.14 -51.93 -0.42 -0.17 16 37 H 0.07 0.56 8.12 -51.93 -0.42 0.14 16 38 H 0.07 0.52 6.58 -51.93 -0.34 0.18 16 39 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.08 0.83 6.44 -51.93 -0.33 0.49 16 42 H 0.07 0.55 6.43 -51.93 -0.33 0.22 16 43 H 0.08 1.54 7.40 -51.93 -0.38 1.16 16 44 H 0.08 1.55 8.11 -51.93 -0.42 1.13 16 45 H 0.02 0.61 7.16 -51.93 -0.37 0.24 16 46 H 0.02 0.48 7.53 -51.93 -0.39 0.09 16 47 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 LS Contribution 358.28 15.07 5.40 5.40 Total: -1.00 -33.55 358.28 -8.49 -42.04 By element: Atomic # 1 Polarization: 4.79 SS G_CDS: -8.65 Total: -3.85 kcal Atomic # 6 Polarization: -6.89 SS G_CDS: 0.12 Total: -6.77 kcal Atomic # 7 Polarization: -42.24 SS G_CDS: -0.78 Total: -43.02 kcal Atomic # 8 Polarization: -12.06 SS G_CDS: 0.09 Total: -11.97 kcal Atomic # 14 Polarization: 22.85 SS G_CDS: -4.67 Total: 18.18 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -33.55 -8.49 -42.04 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362125302.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.110 kcal (2) G-P(sol) polarization free energy of solvation -33.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.040 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds