Wall clock time and date at job start Tue Mar 31 2020 05:20:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09006 * 109.47218 * 2 1 4 4 C 1.52997 * 109.47362 * 120.00268 * 2 1 3 5 5 C 1.53117 * 109.52405 * 296.39928 * 4 2 1 6 6 C 1.53044 * 109.27713 * 182.50133 * 5 4 2 7 7 N 1.46847 * 109.57399 * 59.08445 * 6 5 4 8 8 C 1.46894 * 111.00023 * 174.19258 * 7 6 5 9 9 C 1.46845 * 111.19715 * 298.29116 * 7 6 5 10 10 C 1.53038 * 109.52668 * 61.74052 * 9 7 6 11 11 N 1.46500 * 109.47206 * 240.00466 * 2 1 3 12 12 C 1.46499 * 120.00307 * 295.58236 * 11 2 1 13 13 C 1.34774 * 120.00068 * 115.58403 * 11 2 1 14 14 O 1.21279 * 120.00334 * 359.72361 * 13 11 2 15 15 C 1.50702 * 119.99952 * 179.97438 * 13 11 2 16 16 C 1.53005 * 109.47044 * 179.72675 * 15 13 11 17 17 C 1.50701 * 109.47144 * 180.02562 * 16 15 13 18 18 H 1.08003 * 119.99707 * 359.97438 * 17 16 15 19 19 C 1.37878 * 119.99982 * 180.02562 * 17 16 15 20 20 N 1.31509 * 119.99970 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 119.99747 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47450 * 59.99940 * 21 19 17 23 23 H 1.48502 * 109.46966 * 179.97438 * 21 19 17 24 24 H 1.48505 * 109.47259 * 299.99654 * 21 19 17 25 25 H 1.09002 * 109.47276 * 59.99603 * 1 2 3 26 26 H 1.09001 * 109.46827 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47302 * 299.99864 * 1 2 3 28 28 H 1.09001 * 109.52003 * 56.52626 * 4 2 1 29 29 H 1.08998 * 109.50514 * 302.37845 * 5 4 2 30 30 H 1.09001 * 109.50157 * 62.49936 * 5 4 2 31 31 H 1.08998 * 109.40939 * 299.06662 * 6 5 4 32 32 H 1.09003 * 109.46095 * 179.13253 * 6 5 4 33 33 H 1.08998 * 109.47364 * 184.20756 * 8 7 6 34 34 H 1.08998 * 109.47564 * 304.21079 * 8 7 6 35 35 H 1.09009 * 109.47341 * 64.20938 * 8 7 6 36 36 H 1.09004 * 109.46123 * 301.72286 * 9 7 6 37 37 H 1.09007 * 109.46371 * 181.75915 * 9 7 6 38 38 H 1.09002 * 109.50333 * 180.87770 * 10 9 7 39 39 H 1.09001 * 109.49636 * 60.76059 * 10 9 7 40 40 H 1.09002 * 109.47618 * 264.84685 * 12 11 2 41 41 H 1.09005 * 109.46644 * 24.83942 * 12 11 2 42 42 H 1.09000 * 109.47291 * 144.83828 * 12 11 2 43 43 H 1.09004 * 109.47206 * 299.72412 * 15 13 11 44 44 H 1.08999 * 109.47283 * 59.72618 * 15 13 11 45 45 H 1.09004 * 109.46905 * 299.99922 * 16 15 13 46 46 H 1.08995 * 109.47360 * 60.00287 * 16 15 13 47 47 H 0.97001 * 119.99587 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6056 0.0499 2.4986 6 6 2.1712 -0.6416 3.7412 7 7 3.6365 -0.6866 3.6552 8 6 4.2204 -1.2197 4.8932 9 6 4.0762 -1.4632 2.4890 10 6 3.5688 -0.7954 1.2089 11 7 2.0183 -0.6905 -1.1962 12 6 1.7460 -2.1181 -1.3805 13 6 2.7181 -0.0124 -2.1272 14 8 2.9393 1.1706 -1.9772 15 6 3.2210 -0.7229 -3.3575 16 6 3.9723 0.2689 -4.2479 17 6 4.4746 -0.4414 -5.4784 18 1 4.2780 -1.4949 -5.6118 19 6 5.1861 0.2535 -6.4334 20 7 5.4259 1.5363 -6.2707 21 14 5.8093 -0.6271 -7.9584 22 1 4.6591 -1.1922 -8.7086 23 1 6.5385 0.3355 -8.8226 24 1 6.7255 -1.7247 -7.5565 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.6272 -1.7296 1.2816 29 1 1.9852 1.0704 2.4467 30 1 0.5172 0.0683 2.5548 31 1 1.7794 -1.6570 3.8006 32 1 1.8766 -0.0861 4.6317 33 1 5.3076 -1.1726 4.8318 34 1 3.8784 -0.6263 5.7412 35 1 3.9084 -2.2557 5.0254 36 1 3.6756 -2.4748 2.5543 37 1 5.1653 -1.5046 2.4699 38 1 3.8822 -1.3806 0.3443 39 1 3.9802 0.2114 1.1361 40 1 2.5942 -2.6995 -1.0190 41 1 0.8522 -2.3927 -0.8201 42 1 1.5887 -2.3244 -2.4392 43 1 3.8937 -1.5282 -3.0625 44 1 2.3767 -1.1380 -3.9079 45 1 3.2996 1.0743 -4.5428 46 1 4.8166 0.6840 -3.6975 47 1 5.9261 2.0252 -6.9427 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000362125303.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:23 Heat of formation + Delta-G solvation = -51.050474 kcal Electronic energy + Delta-G solvation = -23252.725562 eV Core-core repulsion = 20048.677732 eV Total energy + Delta-G solvation = -3204.047830 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.11513 -38.73588 -36.21941 -33.69207 -33.33620 -31.30700 -31.02177 -30.01136 -26.76286 -26.62868 -25.74673 -23.69493 -23.07422 -21.97161 -20.44400 -19.68854 -18.43729 -16.94222 -16.24078 -16.01445 -15.37905 -15.24809 -15.21045 -14.78058 -14.41734 -14.06592 -13.81998 -13.58837 -13.28166 -12.90284 -12.74475 -12.59341 -12.32146 -12.25547 -12.10874 -12.01057 -11.85798 -11.70513 -11.32002 -11.28103 -11.08322 -10.89270 -10.61181 -10.57887 -10.46418 -10.36316 -9.90434 -9.58179 -9.12760 -8.91356 -8.54721 -8.33245 -8.27088 -5.93059 -3.97422 3.29192 3.34087 3.35994 3.40866 3.42858 3.72833 4.48917 4.52539 4.66310 4.68284 4.93964 5.07018 5.12570 5.19696 5.21427 5.26491 5.32870 5.33356 5.41631 5.42436 5.48960 5.54089 5.58999 5.60567 5.62787 5.66401 5.78845 5.80049 5.87442 5.94952 6.06594 6.20076 6.21870 6.28063 6.29280 6.42384 6.84839 6.86647 6.89189 6.97211 7.77246 7.82313 7.90687 8.10971 8.42204 8.82408 9.11143 9.65819 11.17874 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.025252 B = 0.003431 C = 0.003248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1108.545069 B = 8158.764272 C = 8619.087105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.139 3.861 3 H 0.100 0.900 4 C -0.093 4.093 5 C -0.111 4.111 6 C 0.058 3.942 7 N -0.544 5.544 8 C 0.026 3.974 9 C 0.058 3.942 10 C -0.109 4.109 11 N -0.622 5.622 12 C 0.082 3.918 13 C 0.512 3.488 14 O -0.533 6.533 15 C -0.127 4.127 16 C 0.038 3.962 17 C -0.527 4.527 18 H 0.054 0.946 19 C 0.058 3.942 20 N -0.890 5.890 21 Si 0.892 3.108 22 H -0.277 1.277 23 H -0.287 1.287 24 H -0.277 1.277 25 H 0.059 0.941 26 H 0.054 0.946 27 H 0.065 0.935 28 H 0.066 0.934 29 H 0.074 0.926 30 H 0.070 0.930 31 H 0.030 0.970 32 H 0.073 0.927 33 H 0.068 0.932 34 H 0.066 0.934 35 H 0.022 0.978 36 H 0.030 0.970 37 H 0.074 0.926 38 H 0.070 0.930 39 H 0.073 0.927 40 H 0.051 0.949 41 H 0.065 0.935 42 H 0.072 0.928 43 H 0.077 0.923 44 H 0.078 0.922 45 H 0.022 0.978 46 H 0.023 0.977 47 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.124 -8.870 20.991 24.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.036 3.964 3 H 0.118 0.882 4 C -0.112 4.112 5 C -0.150 4.150 6 C -0.070 4.070 7 N -0.269 5.269 8 C -0.123 4.123 9 C -0.070 4.070 10 C -0.147 4.147 11 N -0.358 5.358 12 C -0.061 4.061 13 C 0.302 3.698 14 O -0.409 6.409 15 C -0.167 4.167 16 C 0.000 4.000 17 C -0.565 4.565 18 H 0.073 0.927 19 C -0.143 4.143 20 N -0.528 5.528 21 Si 0.720 3.280 22 H -0.203 1.203 23 H -0.213 1.213 24 H -0.203 1.203 25 H 0.078 0.922 26 H 0.073 0.927 27 H 0.084 0.916 28 H 0.085 0.915 29 H 0.093 0.907 30 H 0.088 0.912 31 H 0.048 0.952 32 H 0.091 0.909 33 H 0.087 0.913 34 H 0.085 0.915 35 H 0.041 0.959 36 H 0.048 0.952 37 H 0.092 0.908 38 H 0.089 0.911 39 H 0.092 0.908 40 H 0.069 0.931 41 H 0.083 0.917 42 H 0.091 0.909 43 H 0.096 0.904 44 H 0.096 0.904 45 H 0.041 0.959 46 H 0.041 0.959 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -8.737 -7.587 20.905 23.894 hybrid contribution 0.051 -1.478 -0.712 1.641 sum -8.685 -9.064 20.193 23.777 Atomic orbital electron populations 1.22177 0.95610 1.01825 1.02300 1.21000 0.93397 0.98282 0.83767 0.88181 1.21516 0.96224 0.99275 0.94222 1.21668 0.99945 1.00334 0.93020 1.22072 0.87256 0.98922 0.98728 1.61908 1.08560 1.53444 1.02948 1.22343 1.00377 0.97456 0.92092 1.22110 1.00229 0.94254 0.90393 1.21580 0.94699 1.02290 0.96092 1.48057 1.56312 1.09991 1.21402 1.21665 1.00546 0.81389 1.02517 1.21550 0.76362 0.87524 0.84371 1.90652 1.56581 1.15993 1.77642 1.21874 1.00851 1.00984 0.93019 1.18892 0.95248 0.93235 0.92611 1.21189 1.34952 0.95663 1.04738 0.92731 1.25020 0.96193 0.94833 0.98303 1.69988 1.40159 1.07586 1.35089 0.86666 0.78964 0.79362 0.83003 1.20283 1.21295 1.20259 0.92222 0.92681 0.91633 0.91511 0.90706 0.91171 0.95193 0.90885 0.91348 0.91502 0.95938 0.95201 0.90780 0.91138 0.90822 0.93093 0.91661 0.90915 0.90437 0.90416 0.95924 0.95870 0.92914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.70 8.98 37.15 0.33 -1.37 16 2 C 0.14 1.79 2.20 -67.94 -0.15 1.64 16 3 H 0.10 1.59 6.91 -51.93 -0.36 1.23 16 4 C -0.09 -0.99 1.55 -90.50 -0.14 -1.13 16 5 C -0.11 -1.05 5.04 -26.65 -0.13 -1.18 16 6 C 0.06 0.52 5.46 -3.83 -0.02 0.50 16 7 N -0.54 -5.57 4.91 -242.95 -1.19 -6.76 16 8 C 0.03 0.21 9.59 60.06 0.58 0.78 16 9 C 0.06 0.61 5.46 -3.83 -0.02 0.59 16 10 C -0.11 -1.32 5.14 -26.65 -0.14 -1.46 16 11 N -0.62 -9.07 1.93 -173.94 -0.34 -9.41 16 12 C 0.08 0.91 8.98 59.85 0.54 1.45 16 13 C 0.51 10.08 7.67 -10.99 -0.08 9.99 16 14 O -0.53 -12.76 15.32 5.56 0.09 -12.68 16 15 C -0.13 -2.64 4.26 -27.88 -0.12 -2.76 16 16 C 0.04 1.03 4.26 -27.88 -0.12 0.91 16 17 C -0.53 -15.11 9.11 -34.44 -0.31 -15.42 16 18 H 0.05 1.47 7.74 -52.48 -0.41 1.06 16 19 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 20 N -0.89 -27.70 13.29 55.43 0.74 -26.97 16 21 Si 0.89 21.83 29.54 -169.99 -5.02 16.81 16 22 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 23 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 24 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 25 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.05 0.50 6.87 -51.93 -0.36 0.15 16 27 H 0.06 0.58 6.58 -51.93 -0.34 0.24 16 28 H 0.07 0.66 7.60 -51.93 -0.39 0.26 16 29 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.07 0.55 6.66 -51.93 -0.35 0.20 16 31 H 0.03 0.26 8.14 -51.93 -0.42 -0.16 16 32 H 0.07 0.58 8.09 -51.93 -0.42 0.16 16 33 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 34 H 0.07 0.48 8.09 -51.93 -0.42 0.06 16 35 H 0.02 0.17 8.14 -51.92 -0.42 -0.25 16 36 H 0.03 0.30 8.14 -51.93 -0.42 -0.13 16 37 H 0.07 0.78 8.12 -51.93 -0.42 0.35 16 38 H 0.07 0.92 7.09 -51.93 -0.37 0.56 16 39 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 40 H 0.05 0.52 7.76 -51.93 -0.40 0.12 16 41 H 0.06 0.57 6.56 -51.93 -0.34 0.23 16 42 H 0.07 0.81 6.65 -51.93 -0.35 0.46 16 43 H 0.08 1.48 8.11 -51.93 -0.42 1.06 16 44 H 0.08 1.48 7.40 -51.93 -0.38 1.10 16 45 H 0.02 0.67 8.10 -51.93 -0.42 0.25 16 46 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 47 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 LS Contribution 361.21 15.07 5.44 5.44 Total: -1.00 -33.59 361.21 -8.84 -42.43 By element: Atomic # 1 Polarization: 5.64 SS G_CDS: -8.66 Total: -3.02 kcal Atomic # 6 Polarization: -5.96 SS G_CDS: 0.11 Total: -5.85 kcal Atomic # 7 Polarization: -42.35 SS G_CDS: -0.79 Total: -43.14 kcal Atomic # 8 Polarization: -12.76 SS G_CDS: 0.09 Total: -12.68 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -33.59 -8.84 -42.43 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362125303.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.618 kcal (2) G-P(sol) polarization free energy of solvation -33.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.432 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds