Wall clock time and date at job start Tue Mar 31 2020 05:57:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46906 * 109.46936 * 2 1 4 4 C 1.46928 * 110.98641 * 289.71166 * 3 2 1 5 5 C 1.53036 * 109.47799 * 174.17777 * 4 3 2 6 6 C 1.53119 * 109.30907 * 59.16463 * 5 4 3 7 7 H 1.09000 * 109.52618 * 62.28762 * 6 5 4 8 8 N 1.46503 * 109.52362 * 182.41981 * 6 5 4 9 9 C 1.46502 * 119.99895 * 59.99664 * 8 6 5 10 10 C 1.34773 * 119.99931 * 239.99511 * 8 6 5 11 11 O 1.21283 * 120.00109 * 0.02562 * 10 8 6 12 12 C 1.50702 * 120.00021 * 179.97438 * 10 8 6 13 13 C 1.52997 * 109.47279 * 180.02562 * 12 10 8 14 14 C 1.50693 * 109.47214 * 179.97438 * 13 12 10 15 15 H 1.08000 * 119.99970 * 359.97438 * 14 13 12 16 16 C 1.37877 * 120.00010 * 180.02562 * 14 13 12 17 17 N 1.31513 * 120.00238 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 120.00068 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.47650 * 89.99615 * 18 16 14 20 20 H 1.48504 * 109.47154 * 209.99650 * 18 16 14 21 21 H 1.48507 * 109.47210 * 329.99470 * 18 16 14 22 22 C 1.53128 * 109.15870 * 302.32000 * 6 5 4 23 23 C 1.46846 * 110.99751 * 165.48234 * 3 2 1 24 24 H 1.08998 * 109.46028 * 65.82822 * 23 3 2 25 25 C 1.52999 * 109.46494 * 305.85712 * 23 3 2 26 26 H 1.09001 * 109.46995 * 299.99787 * 1 2 3 27 27 H 1.08996 * 109.47186 * 59.99840 * 1 2 3 28 28 H 1.08998 * 109.46838 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46995 * 240.00212 * 2 1 3 30 30 H 1.08996 * 109.47186 * 120.00160 * 2 1 3 31 31 H 1.09002 * 109.51847 * 54.15755 * 4 3 2 32 32 H 1.08998 * 109.45466 * 294.16366 * 4 3 2 33 33 H 1.08998 * 109.50315 * 299.19997 * 5 4 3 34 34 H 1.09007 * 109.50047 * 179.11940 * 5 4 3 35 35 H 1.09001 * 109.47265 * 89.99978 * 9 8 6 36 36 H 1.09002 * 109.47120 * 210.00453 * 9 8 6 37 37 H 1.09002 * 109.47217 * 329.99857 * 9 8 6 38 38 H 1.09005 * 109.46766 * 300.00167 * 12 10 8 39 39 H 1.08995 * 109.47267 * 60.00037 * 12 10 8 40 40 H 1.08995 * 109.47208 * 300.00242 * 13 12 10 41 41 H 1.09006 * 109.46743 * 59.99926 * 13 12 10 42 42 H 0.97001 * 120.00189 * 180.02562 * 17 16 14 43 43 H 1.08995 * 109.49991 * 177.59456 * 22 6 5 44 44 H 1.08991 * 109.50369 * 297.67944 * 22 6 5 45 45 H 1.09002 * 109.46978 * 307.26285 * 25 23 3 46 46 H 1.08993 * 109.47041 * 67.26265 * 25 23 3 47 47 H 1.08995 * 109.47202 * 187.26510 * 25 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3851 0.0000 4 6 1.7588 2.0354 -1.2914 5 6 2.1484 3.5129 -1.2067 6 6 3.6326 3.6253 -0.8474 7 1 4.2335 3.1698 -1.6346 8 7 3.9971 5.0374 -0.7083 9 6 3.3274 5.8716 0.2926 10 6 4.9486 5.5690 -1.5011 11 8 5.5028 4.8785 -2.3300 12 6 5.3232 7.0218 -1.3584 13 6 6.4184 7.3678 -2.3692 14 6 6.7924 8.8206 -2.2269 15 1 6.2981 9.4358 -1.4896 16 6 7.7650 9.3647 -3.0387 17 7 8.3666 8.6158 -3.9369 18 14 8.2292 11.1654 -2.8619 19 1 9.3301 11.2983 -1.8743 20 1 8.6769 11.6926 -4.1761 21 1 7.0495 11.9372 -2.3949 22 6 3.8857 2.8988 0.4765 23 6 3.4463 1.4388 0.3437 24 1 4.0274 0.9547 -0.4412 25 6 3.6787 0.7137 1.6707 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8899 31 1 0.6992 1.9526 -1.5335 32 1 2.3478 1.5485 -2.0686 33 1 1.5500 4.0036 -0.4391 34 1 1.9697 3.9922 -2.1693 35 1 3.8785 5.8253 1.2318 36 1 3.2931 6.9031 -0.0582 37 1 2.3120 5.5072 0.4487 38 1 4.4471 7.6429 -1.5456 39 1 5.6894 7.2051 -0.3484 40 1 7.2944 6.7467 -2.1825 41 1 6.0516 7.1846 -3.3792 42 1 9.0511 8.9985 -4.5078 43 1 4.9482 2.9386 0.7162 44 1 3.3152 3.3802 1.2706 45 1 3.0024 1.1133 2.4264 46 1 3.4894 -0.3517 1.5405 47 1 4.7099 0.8631 1.9906 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000362194923.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:59 Heat of formation + Delta-G solvation = -47.107622 kcal Electronic energy + Delta-G solvation = -23018.702096 eV Core-core repulsion = 19814.825241 eV Total energy + Delta-G solvation = -3203.876855 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.18897 -38.77012 -35.75745 -33.55304 -33.21892 -32.60286 -30.91978 -29.46773 -27.29361 -26.63640 -25.84689 -24.18590 -22.20548 -21.90802 -20.63462 -19.69124 -18.45815 -16.90908 -16.43699 -15.91626 -15.79380 -15.32971 -15.13972 -14.59866 -14.42263 -14.37409 -13.88612 -13.48465 -13.17914 -12.97158 -12.61069 -12.37601 -12.22571 -12.15287 -12.11341 -12.08260 -12.01110 -11.91082 -11.37692 -11.16290 -11.08582 -10.95996 -10.91279 -10.60063 -10.51859 -10.46362 -9.92176 -9.59271 -9.13648 -8.93840 -8.52914 -8.35338 -8.28487 -5.94245 -3.98522 3.25694 3.30776 3.34411 3.40587 3.43342 3.61194 4.48454 4.58803 4.62161 4.70071 4.86313 4.95556 5.06253 5.17478 5.18168 5.23951 5.28118 5.36733 5.40597 5.41015 5.44905 5.50138 5.56579 5.58027 5.63595 5.72072 5.73453 5.82927 5.84763 5.92274 5.94912 6.03086 6.10182 6.25125 6.27921 6.31325 6.80980 6.90404 6.92171 6.95410 7.76468 7.80238 7.89094 8.09583 8.40984 8.79180 9.10155 9.64842 11.16766 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.040654 B = 0.002954 C = 0.002946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 688.581644 B = 9477.205079 C = 9500.850343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.043 3.957 3 N -0.534 5.534 4 C 0.058 3.942 5 C -0.124 4.124 6 C 0.138 3.862 7 H 0.095 0.905 8 N -0.624 5.624 9 C 0.081 3.919 10 C 0.511 3.489 11 O -0.536 6.536 12 C -0.127 4.127 13 C 0.037 3.963 14 C -0.526 4.526 15 H 0.055 0.945 16 C 0.057 3.943 17 N -0.890 5.890 18 Si 0.893 3.107 19 H -0.281 1.281 20 H -0.287 1.287 21 H -0.274 1.274 22 C -0.117 4.117 23 C 0.083 3.917 24 H 0.042 0.958 25 C -0.146 4.146 26 H 0.062 0.938 27 H 0.053 0.947 28 H 0.055 0.945 29 H 0.031 0.969 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.034 0.966 33 H 0.074 0.926 34 H 0.070 0.930 35 H 0.051 0.949 36 H 0.075 0.925 37 H 0.067 0.933 38 H 0.079 0.921 39 H 0.078 0.922 40 H 0.023 0.977 41 H 0.023 0.977 42 H 0.261 0.739 43 H 0.070 0.930 44 H 0.074 0.926 45 H 0.065 0.935 46 H 0.055 0.945 47 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.300 -15.984 11.621 25.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.085 4.085 3 N -0.259 5.259 4 C -0.071 4.071 5 C -0.163 4.163 6 C 0.034 3.966 7 H 0.113 0.887 8 N -0.359 5.359 9 C -0.063 4.063 10 C 0.302 3.698 11 O -0.412 6.412 12 C -0.167 4.167 13 C -0.001 4.001 14 C -0.564 4.564 15 H 0.074 0.926 16 C -0.144 4.144 17 N -0.529 5.529 18 Si 0.720 3.280 19 H -0.207 1.207 20 H -0.212 1.212 21 H -0.199 1.199 22 C -0.156 4.156 23 C -0.025 4.025 24 H 0.060 0.940 25 C -0.204 4.204 26 H 0.081 0.919 27 H 0.072 0.928 28 H 0.074 0.926 29 H 0.050 0.950 30 H 0.098 0.902 31 H 0.097 0.903 32 H 0.053 0.947 33 H 0.092 0.908 34 H 0.089 0.911 35 H 0.070 0.930 36 H 0.094 0.906 37 H 0.085 0.915 38 H 0.097 0.903 39 H 0.097 0.903 40 H 0.041 0.959 41 H 0.041 0.959 42 H 0.070 0.930 43 H 0.088 0.912 44 H 0.092 0.908 45 H 0.084 0.916 46 H 0.074 0.926 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -16.099 -16.070 11.375 25.433 hybrid contribution 0.686 0.577 -0.516 1.034 sum -15.413 -15.492 10.859 24.403 Atomic orbital electron populations 1.21779 0.94965 1.01254 1.02457 1.22176 0.96068 0.89171 1.01038 1.62056 1.16555 1.16431 1.30906 1.22087 1.01083 0.94355 0.89531 1.21939 0.96255 0.95754 1.02360 1.21002 0.95416 0.82147 0.98067 0.88670 1.48067 1.40068 1.09831 1.37892 1.21710 0.97171 0.95731 0.91666 1.21611 0.77542 0.91355 0.79342 1.90646 1.52395 1.62946 1.35165 1.21875 1.02179 0.89252 1.03379 1.18903 0.92058 0.95830 0.93289 1.21223 1.20751 0.95367 1.19081 0.92626 1.25029 0.96278 0.97835 0.95281 1.70000 1.25699 1.35725 1.21463 0.86594 0.78732 0.85260 0.77374 1.20678 1.21235 1.19888 1.21964 1.01464 0.94032 0.98092 1.21562 0.87770 0.96066 0.97131 0.94019 1.21913 1.02031 0.99634 0.96808 0.91915 0.92757 0.92552 0.95050 0.90215 0.90292 0.94730 0.90759 0.91109 0.93026 0.90609 0.91470 0.90298 0.90325 0.95901 0.95896 0.92972 0.91162 0.90771 0.91601 0.92614 0.91949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.01 9.93 37.16 0.37 -0.65 16 2 C 0.04 0.34 5.47 -3.82 -0.02 0.32 16 3 N -0.53 -5.08 4.46 -226.62 -1.01 -6.09 16 4 C 0.06 0.57 5.31 -3.79 -0.02 0.55 16 5 C -0.12 -1.40 5.40 -26.65 -0.14 -1.54 16 6 C 0.14 1.86 2.59 -67.80 -0.18 1.68 16 7 H 0.10 1.57 6.90 -51.93 -0.36 1.21 16 8 N -0.62 -9.45 2.77 -173.78 -0.48 -9.93 16 9 C 0.08 0.92 9.25 59.85 0.55 1.47 16 10 C 0.51 10.27 7.67 -10.99 -0.08 10.18 16 11 O -0.54 -13.01 15.31 5.55 0.09 -12.92 16 12 C -0.13 -2.65 4.19 -27.88 -0.12 -2.77 16 13 C 0.04 1.01 4.26 -27.89 -0.12 0.89 16 14 C -0.53 -15.10 9.11 -34.44 -0.31 -15.41 16 15 H 0.06 1.50 7.74 -52.49 -0.41 1.10 16 16 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 17 N -0.89 -27.75 13.29 55.43 0.74 -27.01 16 18 Si 0.89 21.84 29.54 -169.99 -5.02 16.82 16 19 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 20 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 21 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 22 C -0.12 -1.33 4.69 -26.64 -0.12 -1.45 16 23 C 0.08 0.84 2.44 -67.72 -0.17 0.67 16 24 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 25 C -0.15 -1.20 8.56 37.16 0.32 -0.88 16 26 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.05 0.38 6.59 -51.93 -0.34 0.04 16 28 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.03 0.26 8.07 -51.93 -0.42 -0.16 16 30 H 0.08 0.58 5.61 -51.93 -0.29 0.29 16 31 H 0.08 0.70 6.42 -51.93 -0.33 0.36 16 32 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.07 0.78 6.58 -51.93 -0.34 0.44 16 34 H 0.07 0.86 8.14 -51.92 -0.42 0.43 16 35 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.08 0.86 6.44 -51.93 -0.33 0.53 16 37 H 0.07 0.63 6.39 -51.93 -0.33 0.30 16 38 H 0.08 1.51 7.40 -51.93 -0.38 1.12 16 39 H 0.08 1.51 8.11 -51.93 -0.42 1.09 16 40 H 0.02 0.68 8.10 -51.93 -0.42 0.26 16 41 H 0.02 0.68 8.10 -51.93 -0.42 0.26 16 42 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 43 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 44 H 0.07 0.80 7.59 -51.93 -0.39 0.40 16 45 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 46 H 0.05 0.40 6.46 -51.93 -0.34 0.07 16 47 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 LS Contribution 359.12 15.07 5.41 5.41 Total: -1.00 -33.45 359.12 -8.89 -42.35 By element: Atomic # 1 Polarization: 5.17 SS G_CDS: -8.47 Total: -3.30 kcal Atomic # 6 Polarization: -5.19 SS G_CDS: -0.14 Total: -5.33 kcal Atomic # 7 Polarization: -42.27 SS G_CDS: -0.75 Total: -43.03 kcal Atomic # 8 Polarization: -13.01 SS G_CDS: 0.09 Total: -12.92 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -33.45 -8.89 -42.35 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362194923.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.760 kcal (2) G-P(sol) polarization free energy of solvation -33.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.347 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds