Wall clock time and date at job start Tue Mar 31 2020 05:58:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46898 * 109.47012 * 2 1 4 4 C 1.46851 * 111.00219 * 295.07433 * 3 2 1 5 5 C 1.53040 * 109.52188 * 174.16011 * 4 3 2 6 6 C 1.53117 * 109.27871 * 59.17948 * 5 4 3 7 7 H 1.09000 * 109.52462 * 182.37583 * 6 5 4 8 8 N 1.46503 * 109.52380 * 62.24734 * 6 5 4 9 9 C 1.46497 * 119.99844 * 359.89036 * 8 6 5 10 10 C 1.34771 * 120.00186 * 179.88505 * 8 6 5 11 11 O 1.21282 * 120.00242 * 0.02562 * 10 8 6 12 12 C 1.50705 * 120.00308 * 180.02562 * 10 8 6 13 13 C 1.52988 * 109.47333 * 180.02562 * 12 10 8 14 14 C 1.50705 * 109.47333 * 180.02562 * 13 12 10 15 15 H 1.07995 * 119.99711 * 359.97438 * 14 13 12 16 16 C 1.37875 * 119.99988 * 180.02562 * 14 13 12 17 17 N 1.31505 * 120.00506 * 359.97438 * 16 14 13 18 18 Si 1.86807 * 119.99578 * 179.97438 * 16 14 13 19 19 H 1.48492 * 109.47030 * 59.99911 * 18 16 14 20 20 H 1.48501 * 109.46981 * 180.02562 * 18 16 14 21 21 H 1.48504 * 109.47195 * 299.99668 * 18 16 14 22 22 C 1.53122 * 109.16033 * 302.34526 * 6 5 4 23 23 C 1.46847 * 110.99984 * 170.86459 * 3 2 1 24 24 H 1.09004 * 109.46300 * 65.82290 * 23 3 2 25 25 C 1.53005 * 109.46133 * 305.85778 * 23 3 2 26 26 H 1.09002 * 109.46717 * 299.99362 * 1 2 3 27 27 H 1.08994 * 109.47487 * 59.99697 * 1 2 3 28 28 H 1.08998 * 109.47164 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.46717 * 240.00638 * 2 1 3 30 30 H 1.08994 * 109.47487 * 120.00303 * 2 1 3 31 31 H 1.08990 * 109.46014 * 54.14643 * 4 3 2 32 32 H 1.08994 * 109.46218 * 294.17854 * 4 3 2 33 33 H 1.08997 * 109.50414 * 299.24002 * 5 4 3 34 34 H 1.08999 * 109.50324 * 179.11961 * 5 4 3 35 35 H 1.09004 * 109.47020 * 264.31935 * 9 8 6 36 36 H 1.08999 * 109.47557 * 24.31719 * 9 8 6 37 37 H 1.09004 * 109.47415 * 144.31654 * 9 8 6 38 38 H 1.08999 * 109.46724 * 300.00454 * 12 10 8 39 39 H 1.09004 * 109.47138 * 59.99555 * 12 10 8 40 40 H 1.08999 * 109.47537 * 299.99896 * 13 12 10 41 41 H 1.09004 * 109.47421 * 59.99668 * 13 12 10 42 42 H 0.96999 * 120.00634 * 180.02562 * 17 16 14 43 43 H 1.09011 * 109.50165 * 177.59481 * 22 6 5 44 44 H 1.08994 * 109.50512 * 297.70719 * 22 6 5 45 45 H 1.08997 * 109.46999 * 55.50143 * 25 23 3 46 46 H 1.09006 * 109.46992 * 175.49941 * 25 23 3 47 47 H 1.08994 * 109.47131 * 295.49912 * 25 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6473 2.0749 -1.2418 5 6 2.0443 3.5498 -1.1462 6 6 3.5546 3.6529 -0.9161 7 1 3.8355 4.7002 -0.8053 8 7 4.2646 3.0738 -2.0593 9 6 3.5099 2.5137 -3.1830 10 6 5.6121 3.0566 -2.0772 11 8 6.2370 3.5200 -1.1468 12 6 6.3426 2.4614 -3.2534 13 6 7.8513 2.5670 -3.0233 14 6 8.5818 1.9724 -4.1998 15 1 8.0254 1.5601 -5.0285 16 6 9.9603 1.9539 -4.2177 17 7 10.6378 2.4555 -3.2084 18 14 10.8656 1.2162 -5.6757 19 1 10.5007 1.9558 -6.9106 20 1 12.3301 1.3177 -5.4519 21 1 10.4857 -0.2118 -5.8233 22 6 3.9226 2.8856 0.3568 23 6 3.4712 1.4300 0.2177 24 1 3.9800 0.9714 -0.6303 25 6 3.8190 0.6640 1.4957 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0276 0.0005 29 1 1.8933 -0.5138 -0.8901 30 1 1.8934 -0.5138 0.8899 31 1 0.5705 1.9976 -1.3912 32 1 2.1646 1.6133 -2.0828 33 1 1.5168 4.0154 -0.3137 34 1 1.7820 4.0581 -2.0740 35 1 3.4042 1.4371 -3.0490 36 1 2.5224 2.9735 -3.2228 37 1 4.0414 2.7136 -4.1134 38 1 6.0642 1.4131 -3.3613 39 1 6.0741 3.0037 -4.1601 40 1 8.1300 3.6152 -2.9152 41 1 8.1195 2.0244 -2.1167 42 1 11.6077 2.4428 -3.2211 43 1 5.0024 2.9194 0.5028 44 1 3.4248 3.3408 1.2129 45 1 3.4278 -0.3511 1.4287 46 1 4.9020 0.6289 1.6149 47 1 3.3752 1.1685 2.3538 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000362194924.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:02 Heat of formation + Delta-G solvation = -25.610631 kcal Electronic energy + Delta-G solvation = -23845.443909 eV Core-core repulsion = 20642.499233 eV Total energy + Delta-G solvation = -3202.944675 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.62416 -38.43687 -35.70750 -33.64552 -33.18439 -32.27824 -30.85867 -29.74584 -27.76971 -25.99600 -25.73430 -24.31875 -22.06687 -21.95945 -20.70944 -19.65637 -18.29501 -16.84224 -16.34792 -16.00959 -15.66847 -15.53140 -15.04247 -14.63426 -14.43642 -14.08930 -13.82448 -13.64080 -13.17385 -12.96499 -12.36446 -12.26090 -12.19898 -12.10270 -12.01698 -11.85163 -11.84243 -11.75430 -11.51383 -11.14992 -11.08057 -10.92284 -10.84705 -10.60525 -10.31415 -10.25598 -9.92214 -9.59602 -9.13485 -8.88070 -8.34463 -8.30045 -8.26603 -5.95052 -3.99536 3.26626 3.31240 3.34482 3.39365 3.41273 3.77443 4.47300 4.58996 4.69556 4.83781 4.89593 5.07124 5.11186 5.16298 5.22348 5.31957 5.34952 5.39581 5.40870 5.47236 5.52415 5.54586 5.68851 5.71637 5.74759 5.77829 5.81653 5.87549 5.94488 5.99494 6.09670 6.11669 6.18705 6.25584 6.26230 6.42841 6.84624 6.94069 7.05108 7.09407 7.74949 7.79503 7.88014 8.08477 8.40044 8.79922 9.08873 9.63844 11.15841 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.024802 B = 0.003776 C = 0.003754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1128.676600 B = 7413.121406 C = 7457.462318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.043 3.957 3 N -0.533 5.533 4 C 0.030 3.970 5 C -0.122 4.122 6 C 0.149 3.851 7 H 0.073 0.927 8 N -0.624 5.624 9 C 0.074 3.926 10 C 0.511 3.489 11 O -0.530 6.530 12 C -0.127 4.127 13 C 0.038 3.962 14 C -0.528 4.528 15 H 0.054 0.946 16 C 0.059 3.941 17 N -0.890 5.890 18 Si 0.892 3.108 19 H -0.277 1.277 20 H -0.287 1.287 21 H -0.277 1.277 22 C -0.126 4.126 23 C 0.087 3.913 24 H 0.042 0.958 25 C -0.149 4.149 26 H 0.061 0.939 27 H 0.053 0.947 28 H 0.055 0.945 29 H 0.029 0.971 30 H 0.080 0.920 31 H 0.074 0.926 32 H 0.057 0.943 33 H 0.082 0.918 34 H 0.073 0.927 35 H 0.051 0.949 36 H 0.076 0.924 37 H 0.070 0.930 38 H 0.075 0.925 39 H 0.077 0.923 40 H 0.023 0.977 41 H 0.022 0.978 42 H 0.261 0.739 43 H 0.092 0.908 44 H 0.073 0.927 45 H 0.056 0.944 46 H 0.062 0.938 47 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.395 -2.423 4.925 23.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.084 4.084 3 N -0.259 5.259 4 C -0.097 4.097 5 C -0.159 4.159 6 C 0.045 3.955 7 H 0.091 0.909 8 N -0.360 5.360 9 C -0.069 4.069 10 C 0.302 3.698 11 O -0.405 6.405 12 C -0.167 4.167 13 C 0.001 3.999 14 C -0.566 4.566 15 H 0.072 0.928 16 C -0.143 4.143 17 N -0.528 5.528 18 Si 0.720 3.280 19 H -0.202 1.202 20 H -0.213 1.213 21 H -0.203 1.203 22 C -0.165 4.165 23 C -0.021 4.021 24 H 0.060 0.940 25 C -0.206 4.206 26 H 0.080 0.920 27 H 0.072 0.928 28 H 0.074 0.926 29 H 0.048 0.952 30 H 0.098 0.902 31 H 0.092 0.908 32 H 0.075 0.925 33 H 0.101 0.899 34 H 0.091 0.909 35 H 0.069 0.931 36 H 0.094 0.906 37 H 0.089 0.911 38 H 0.094 0.906 39 H 0.096 0.904 40 H 0.041 0.959 41 H 0.041 0.959 42 H 0.071 0.929 43 H 0.110 0.890 44 H 0.091 0.909 45 H 0.075 0.925 46 H 0.081 0.919 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -22.080 -1.891 5.888 22.930 hybrid contribution 0.828 -0.867 -1.539 1.951 sum -21.252 -2.758 4.349 21.867 Atomic orbital electron populations 1.21798 0.95137 1.01266 1.02270 1.22169 0.95720 0.89528 1.01029 1.62000 1.13529 1.14865 1.35485 1.22692 1.00837 0.94349 0.91860 1.21866 0.94920 0.96581 1.02579 1.20956 0.91015 0.97300 0.86192 0.90932 1.48137 1.06243 1.61900 1.19769 1.22021 0.97355 0.97804 0.89678 1.21487 0.80696 0.78284 0.89361 1.90627 1.66348 1.45830 1.37695 1.21875 1.00396 1.00034 0.94421 1.18882 0.85784 0.98181 0.97065 1.21185 0.91437 1.39626 1.04348 0.92755 1.25014 0.97753 0.95507 0.96030 1.69981 1.06999 1.45296 1.30538 0.86666 0.78695 0.79663 0.82986 1.20249 1.21267 1.20278 1.22040 1.03409 0.93961 0.97092 1.21506 0.86702 0.96516 0.97411 0.94004 1.21950 1.01663 0.99608 0.97388 0.91995 0.92802 0.92576 0.95248 0.90154 0.90778 0.92510 0.89904 0.90890 0.93075 0.90563 0.91098 0.90646 0.90433 0.95877 0.95922 0.92901 0.88990 0.90877 0.92540 0.91941 0.92007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 9.82 37.16 0.36 -0.77 16 2 C 0.04 0.41 5.39 -3.82 -0.02 0.39 16 3 N -0.53 -5.75 4.50 -226.69 -1.02 -6.77 16 4 C 0.03 0.29 4.67 -3.83 -0.02 0.27 16 5 C -0.12 -1.19 5.08 -26.65 -0.14 -1.33 16 6 C 0.15 1.97 2.94 -67.81 -0.20 1.77 16 7 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 8 N -0.62 -9.21 2.35 -173.79 -0.41 -9.62 16 9 C 0.07 0.84 8.04 59.85 0.48 1.32 16 10 C 0.51 10.03 7.38 -10.99 -0.08 9.95 16 11 O -0.53 -12.39 14.10 5.56 0.08 -12.31 16 12 C -0.13 -2.65 4.26 -27.89 -0.12 -2.77 16 13 C 0.04 1.05 4.26 -27.89 -0.12 0.93 16 14 C -0.53 -15.10 9.11 -34.44 -0.31 -15.41 16 15 H 0.05 1.46 7.74 -52.49 -0.41 1.06 16 16 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 17 N -0.89 -27.60 13.29 55.43 0.74 -26.86 16 18 Si 0.89 21.78 29.54 -169.99 -5.02 16.76 16 19 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 20 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 21 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 22 C -0.13 -1.76 4.71 -26.65 -0.13 -1.88 16 23 C 0.09 1.10 2.30 -67.72 -0.16 0.95 16 24 H 0.04 0.63 7.69 -51.93 -0.40 0.23 16 25 C -0.15 -1.73 8.95 37.16 0.33 -1.40 16 26 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 27 H 0.05 0.40 6.40 -51.93 -0.33 0.07 16 28 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.03 0.29 8.13 -51.93 -0.42 -0.13 16 30 H 0.08 0.75 5.60 -51.93 -0.29 0.46 16 31 H 0.07 0.62 6.18 -51.93 -0.32 0.30 16 32 H 0.06 0.57 3.90 -51.93 -0.20 0.37 16 33 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.07 0.62 6.79 -51.93 -0.35 0.27 16 35 H 0.05 0.56 6.76 -51.93 -0.35 0.21 16 36 H 0.08 0.67 4.93 -51.93 -0.26 0.41 16 37 H 0.07 0.80 6.68 -51.93 -0.35 0.45 16 38 H 0.08 1.46 8.11 -51.93 -0.42 1.04 16 39 H 0.08 1.48 7.42 -51.93 -0.39 1.10 16 40 H 0.02 0.69 8.10 -51.93 -0.42 0.26 16 41 H 0.02 0.67 8.10 -51.93 -0.42 0.25 16 42 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 43 H 0.09 1.59 6.15 -51.92 -0.32 1.27 16 44 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 45 H 0.06 0.59 5.87 -51.93 -0.31 0.28 16 46 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 47 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 347.33 15.07 5.23 5.23 Total: -1.00 -32.91 347.33 -8.65 -41.56 By element: Atomic # 1 Polarization: 6.41 SS G_CDS: -8.05 Total: -1.63 kcal Atomic # 6 Polarization: -6.16 SS G_CDS: -0.21 Total: -6.37 kcal Atomic # 7 Polarization: -42.55 SS G_CDS: -0.69 Total: -43.24 kcal Atomic # 8 Polarization: -12.39 SS G_CDS: 0.08 Total: -12.31 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -32.91 -8.65 -41.56 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362194924.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.952 kcal (2) G-P(sol) polarization free energy of solvation -32.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.563 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds