Wall clock time and date at job start Tue Mar 31 2020 05:58:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46900 * 109.47131 * 2 1 4 4 C 1.46845 * 111.00168 * 45.78732 * 3 2 1 5 5 C 1.53033 * 109.52530 * 185.83701 * 4 3 2 6 6 C 1.53111 * 109.27998 * 300.82670 * 5 4 3 7 7 H 1.09000 * 109.57380 * 177.58905 * 6 5 4 8 8 N 1.46503 * 109.52317 * 297.74662 * 6 5 4 9 9 C 1.46495 * 120.00020 * 119.59745 * 8 6 5 10 10 C 1.34780 * 119.99994 * 299.60117 * 8 6 5 11 11 O 1.21284 * 120.00015 * 0.02562 * 10 8 6 12 12 C 1.50695 * 120.00049 * 179.97438 * 10 8 6 13 13 C 1.53008 * 109.47118 * 180.02562 * 12 10 8 14 14 C 1.50695 * 109.47118 * 180.02562 * 13 12 10 15 15 H 1.08005 * 120.00030 * 359.97438 * 14 13 12 16 16 C 1.37874 * 120.00254 * 179.97438 * 14 13 12 17 17 N 1.31521 * 119.99782 * 0.02562 * 16 14 13 18 18 Si 1.86805 * 120.00435 * 179.97438 * 16 14 13 19 19 H 1.48493 * 109.47301 * 270.00368 * 18 16 14 20 20 H 1.48504 * 109.46666 * 30.00445 * 18 16 14 21 21 H 1.48495 * 109.47254 * 150.00060 * 18 16 14 22 22 C 1.53119 * 109.16210 * 57.65205 * 6 5 4 23 23 C 1.46839 * 110.99864 * 170.00184 * 3 2 1 24 24 H 1.09004 * 109.46551 * 294.17257 * 23 3 2 25 25 C 1.52999 * 109.45588 * 54.14831 * 23 3 2 26 26 H 1.08998 * 109.46910 * 300.00236 * 1 2 3 27 27 H 1.09000 * 109.47118 * 60.00029 * 1 2 3 28 28 H 1.09005 * 109.46874 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.46910 * 239.99764 * 2 1 3 30 30 H 1.09000 * 109.47118 * 119.99970 * 2 1 3 31 31 H 1.09003 * 109.46354 * 305.85794 * 4 3 2 32 32 H 1.09009 * 109.45809 * 65.82497 * 4 3 2 33 33 H 1.09004 * 109.50362 * 180.87852 * 5 4 3 34 34 H 1.09000 * 109.49721 * 60.76837 * 5 4 3 35 35 H 1.09000 * 109.47353 * 264.46973 * 9 8 6 36 36 H 1.08996 * 109.47281 * 24.47825 * 9 8 6 37 37 H 1.09005 * 109.46828 * 144.46765 * 9 8 6 38 38 H 1.09002 * 109.47269 * 60.00236 * 12 10 8 39 39 H 1.08998 * 109.47273 * 300.00105 * 12 10 8 40 40 H 1.09002 * 109.46998 * 59.99899 * 13 12 10 41 41 H 1.08998 * 109.46555 * 299.99800 * 13 12 10 42 42 H 0.96994 * 119.99492 * 359.97438 * 17 16 14 43 43 H 1.09001 * 109.50148 * 62.29016 * 22 6 5 44 44 H 1.09000 * 109.50236 * 182.40548 * 22 6 5 45 45 H 1.09000 * 109.47209 * 180.02562 * 25 23 3 46 46 H 1.08994 * 109.47383 * 300.04779 * 25 23 3 47 47 H 1.09005 * 109.46989 * 60.04863 * 25 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.2939 2.1998 0.9826 5 6 1.7265 3.6621 0.8540 6 6 3.2354 3.7657 1.0921 7 1 3.5560 4.7990 0.9595 8 7 3.5473 3.3274 2.4548 9 6 4.4392 2.1855 2.6710 10 6 3.0135 3.9747 3.5096 11 8 2.2746 4.9197 3.3307 12 6 3.3337 3.5236 4.9114 13 6 2.6049 4.4199 5.9147 14 6 2.9257 3.9691 7.3164 15 1 3.5832 3.1273 7.4758 16 6 2.3797 4.6313 8.3954 17 7 1.5786 5.6562 8.2014 18 14 2.7768 4.0722 10.1331 19 1 1.7810 3.0596 10.5669 20 1 4.1358 3.4742 10.1622 21 1 2.7293 5.2382 11.0513 22 6 3.9655 2.8704 0.0871 23 6 3.4680 1.4311 0.2380 24 1 3.6818 1.0768 1.2464 25 6 4.1802 0.5363 -0.7784 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 0.2223 2.1206 0.7995 32 1 1.5179 1.8419 1.9876 33 1 1.1991 4.2641 1.5939 34 1 1.4902 4.0247 -0.1464 35 1 3.8457 1.2809 2.8034 36 1 5.0940 2.0675 1.8078 37 1 5.0415 2.3588 3.5629 38 1 4.4089 3.5906 5.0779 39 1 3.0091 2.4915 5.0440 40 1 1.5298 4.3525 5.7480 41 1 2.9292 5.4520 5.7821 42 1 1.3722 5.9462 7.2991 43 1 3.7645 3.2207 -0.9253 44 1 5.0378 2.9068 0.2792 45 1 5.2552 0.5699 -0.6016 46 1 3.8260 -0.4889 -0.6710 47 1 3.9668 0.8907 -1.7869 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000362194925.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:06 Heat of formation + Delta-G solvation = -30.134354 kcal Electronic energy + Delta-G solvation = -23880.803352 eV Core-core repulsion = 20677.662513 eV Total energy + Delta-G solvation = -3203.140839 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.74119 -38.57910 -35.75661 -33.86444 -33.11641 -32.82175 -30.69316 -29.43779 -27.49362 -26.87670 -25.34900 -24.05665 -22.29777 -21.88284 -20.86476 -19.81398 -18.42036 -17.00908 -16.53405 -15.99529 -15.73276 -15.58679 -15.34328 -14.62932 -14.34804 -13.94210 -13.79765 -13.66728 -13.17315 -13.08023 -12.67155 -12.35920 -12.31830 -12.23071 -12.04685 -11.96174 -11.86791 -11.77119 -11.57416 -11.41506 -11.18737 -10.87349 -10.81803 -10.47144 -10.31049 -10.12194 -10.08009 -9.90387 -9.10053 -8.51655 -8.40552 -8.31838 -8.27020 -6.31104 -4.01096 3.15687 3.23411 3.44940 3.48991 3.64542 3.72494 4.50423 4.57762 4.59184 4.76262 4.94670 4.96598 5.01152 5.12627 5.14519 5.27309 5.29897 5.35025 5.36601 5.45905 5.46635 5.50585 5.55984 5.59642 5.63199 5.65364 5.80695 5.84261 5.88270 5.93069 5.98235 6.05975 6.08281 6.13556 6.14237 6.33381 6.72216 6.83032 6.99465 7.03179 7.53102 7.58566 7.69428 8.21029 8.50886 8.68509 8.93434 9.72621 11.09922 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.024126 B = 0.003801 C = 0.003726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1160.318409 B = 7365.594339 C = 7512.979538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.051 3.949 3 N -0.533 5.533 4 C 0.055 3.945 5 C -0.133 4.133 6 C 0.148 3.852 7 H 0.073 0.927 8 N -0.622 5.622 9 C 0.074 3.926 10 C 0.511 3.489 11 O -0.533 6.533 12 C -0.120 4.120 13 C 0.025 3.975 14 C -0.608 4.608 15 H 0.048 0.952 16 C 0.015 3.985 17 N -0.911 5.911 18 Si 1.072 2.928 19 H -0.288 1.288 20 H -0.289 1.289 21 H -0.284 1.284 22 C -0.116 4.116 23 C 0.057 3.943 24 H 0.066 0.934 25 C -0.147 4.147 26 H 0.059 0.941 27 H 0.063 0.937 28 H 0.057 0.943 29 H 0.075 0.925 30 H 0.030 0.970 31 H 0.079 0.921 32 H 0.033 0.967 33 H 0.090 0.910 34 H 0.073 0.927 35 H 0.052 0.948 36 H 0.077 0.923 37 H 0.071 0.929 38 H 0.079 0.921 39 H 0.077 0.923 40 H 0.013 0.987 41 H 0.014 0.986 42 H 0.272 0.728 43 H 0.084 0.916 44 H 0.073 0.927 45 H 0.058 0.942 46 H 0.055 0.945 47 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.899 -12.397 -19.790 23.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.076 4.076 3 N -0.259 5.259 4 C -0.072 4.072 5 C -0.171 4.171 6 C 0.045 3.955 7 H 0.091 0.909 8 N -0.359 5.359 9 C -0.069 4.069 10 C 0.302 3.698 11 O -0.409 6.409 12 C -0.160 4.160 13 C -0.013 4.013 14 C -0.646 4.646 15 H 0.067 0.933 16 C -0.189 4.189 17 N -0.547 5.547 18 Si 0.901 3.099 19 H -0.215 1.215 20 H -0.215 1.215 21 H -0.210 1.210 22 C -0.154 4.154 23 C -0.051 4.051 24 H 0.083 0.917 25 C -0.204 4.204 26 H 0.078 0.922 27 H 0.082 0.918 28 H 0.077 0.923 29 H 0.093 0.907 30 H 0.048 0.952 31 H 0.097 0.903 32 H 0.052 0.948 33 H 0.109 0.891 34 H 0.092 0.908 35 H 0.070 0.930 36 H 0.096 0.904 37 H 0.089 0.911 38 H 0.097 0.903 39 H 0.095 0.905 40 H 0.032 0.968 41 H 0.032 0.968 42 H 0.083 0.917 43 H 0.102 0.898 44 H 0.091 0.909 45 H 0.077 0.923 46 H 0.074 0.926 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 4.123 -11.359 -18.749 22.306 hybrid contribution 0.533 -0.845 -0.910 1.351 sum 4.656 -12.204 -19.659 23.603 Atomic orbital electron populations 1.21956 0.95181 1.01736 1.02634 1.22075 0.95576 0.89538 1.00442 1.62061 1.03370 1.10225 1.50232 1.22114 0.98538 0.93352 0.93205 1.22002 0.95899 0.96246 1.02987 1.20968 0.95307 0.97951 0.81236 0.90912 1.48111 1.49124 1.32865 1.05750 1.22035 0.93808 0.88504 1.02598 1.21472 0.79093 0.82022 0.87244 1.90617 1.36038 1.27989 1.86219 1.21730 1.02283 1.01989 0.90015 1.19013 0.95258 0.94343 0.92641 1.22053 1.32823 1.18088 0.91668 0.93330 1.25839 0.94100 0.94481 1.04485 1.70705 1.33556 1.24859 1.25608 0.83509 0.75692 0.75828 0.74908 1.21503 1.21531 1.20980 1.21912 0.99378 0.94321 0.99797 1.22224 0.87931 0.95552 0.99377 0.91673 1.21896 0.99658 0.99189 0.99693 0.92195 0.91841 0.92349 0.90695 0.95216 0.90276 0.94839 0.89119 0.90807 0.93013 0.90449 0.91061 0.90256 0.90461 0.96830 0.96774 0.91702 0.89792 0.90854 0.92299 0.92586 0.91932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.40 9.16 37.16 0.34 -1.06 16 2 C 0.05 0.48 5.08 -3.82 -0.02 0.46 16 3 N -0.53 -5.71 4.64 -226.69 -1.05 -6.76 16 4 C 0.06 0.70 4.70 -3.84 -0.02 0.69 16 5 C -0.13 -1.83 5.43 -26.66 -0.14 -1.97 16 6 C 0.15 1.96 2.94 -67.81 -0.20 1.76 16 7 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 8 N -0.62 -9.18 2.36 -173.80 -0.41 -9.59 16 9 C 0.07 0.83 8.05 59.84 0.48 1.31 16 10 C 0.51 10.02 7.38 -10.99 -0.08 9.94 16 11 O -0.53 -12.37 14.10 5.55 0.08 -12.29 16 12 C -0.12 -2.52 4.26 -27.88 -0.12 -2.64 16 13 C 0.02 0.68 3.57 -27.88 -0.10 0.58 16 14 C -0.61 -17.66 9.11 -34.44 -0.31 -17.97 16 15 H 0.05 1.35 7.74 -52.48 -0.41 0.94 16 16 C 0.02 0.45 5.46 -17.82 -0.10 0.36 16 17 N -0.91 -29.03 13.65 55.43 0.76 -28.27 16 18 Si 1.07 25.68 29.90 -169.99 -5.08 20.60 16 19 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 20 H -0.29 -6.51 7.11 56.52 0.40 -6.10 16 21 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 22 C -0.12 -1.14 4.36 -26.65 -0.12 -1.26 16 23 C 0.06 0.55 1.79 -67.73 -0.12 0.43 16 24 H 0.07 0.67 3.90 -51.93 -0.20 0.47 16 25 C -0.15 -1.12 8.78 37.16 0.33 -0.80 16 26 H 0.06 0.59 6.21 -51.93 -0.32 0.27 16 27 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 28 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.07 0.63 6.84 -51.93 -0.36 0.27 16 30 H 0.03 0.29 8.08 -51.93 -0.42 -0.13 16 31 H 0.08 0.97 5.81 -51.93 -0.30 0.67 16 32 H 0.03 0.49 7.69 -51.92 -0.40 0.09 16 33 H 0.09 1.55 6.15 -51.93 -0.32 1.23 16 34 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.05 0.57 6.74 -51.93 -0.35 0.22 16 36 H 0.08 0.69 4.95 -51.93 -0.26 0.43 16 37 H 0.07 0.81 6.67 -51.93 -0.35 0.46 16 38 H 0.08 1.55 7.41 -51.93 -0.38 1.16 16 39 H 0.08 1.52 8.11 -51.93 -0.42 1.10 16 40 H 0.01 0.39 7.97 -51.93 -0.41 -0.02 16 41 H 0.01 0.41 7.97 -51.93 -0.41 0.00 16 42 H 0.27 8.82 7.22 -40.82 -0.29 8.52 16 43 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 44 H 0.07 0.63 6.79 -51.93 -0.35 0.28 16 45 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 46 H 0.06 0.41 6.55 -51.93 -0.34 0.07 16 47 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 LS Contribution 345.84 15.07 5.21 5.21 Total: -1.00 -33.53 345.84 -8.73 -42.26 By element: Atomic # 1 Polarization: 7.07 SS G_CDS: -8.06 Total: -0.98 kcal Atomic # 6 Polarization: -10.00 SS G_CDS: -0.18 Total: -10.18 kcal Atomic # 7 Polarization: -43.92 SS G_CDS: -0.70 Total: -44.62 kcal Atomic # 8 Polarization: -12.37 SS G_CDS: 0.08 Total: -12.29 kcal Atomic # 14 Polarization: 25.68 SS G_CDS: -5.08 Total: 20.60 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -33.53 -8.73 -42.26 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362194925.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.130 kcal (2) G-P(sol) polarization free energy of solvation -33.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.264 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds