Wall clock time and date at job start Tue Mar 31 2020 05:58:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46897 * 109.46975 * 2 1 4 4 C 1.46841 * 111.00326 * 45.78773 * 3 2 1 5 5 C 1.53040 * 109.52469 * 185.83788 * 4 3 2 6 6 C 1.53115 * 109.27851 * 300.82175 * 5 4 3 7 7 H 1.09000 * 109.57260 * 297.71468 * 6 5 4 8 8 N 1.46507 * 109.52188 * 177.56001 * 6 5 4 9 9 C 1.46496 * 119.99734 * 300.31840 * 8 6 5 10 10 C 1.34769 * 120.00057 * 120.31438 * 8 6 5 11 11 O 1.21283 * 120.00330 * 359.97438 * 10 8 6 12 12 C 1.50695 * 120.00194 * 179.97438 * 10 8 6 13 13 C 1.53004 * 109.47535 * 180.02562 * 12 10 8 14 14 C 1.50700 * 109.47208 * 180.02562 * 13 12 10 15 15 H 1.08002 * 119.99770 * 0.02562 * 14 13 12 16 16 C 1.37871 * 120.00083 * 180.02562 * 14 13 12 17 17 N 1.31514 * 120.00147 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 120.00278 * 180.02562 * 16 14 13 19 19 H 1.48494 * 109.47228 * 179.97438 * 18 16 14 20 20 H 1.48501 * 109.46793 * 300.00001 * 18 16 14 21 21 H 1.48500 * 109.47000 * 60.00094 * 18 16 14 22 22 C 1.53106 * 109.16351 * 57.65302 * 6 5 4 23 23 C 1.46849 * 111.00051 * 169.99782 * 3 2 1 24 24 H 1.09005 * 109.46399 * 294.17995 * 23 3 2 25 25 C 1.53009 * 109.45273 * 54.14817 * 23 3 2 26 26 H 1.08999 * 109.47089 * 60.00507 * 1 2 3 27 27 H 1.09003 * 109.47112 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.47687 * 300.00364 * 1 2 3 29 29 H 1.08998 * 109.47322 * 239.99703 * 2 1 3 30 30 H 1.09009 * 109.46986 * 119.99477 * 2 1 3 31 31 H 1.08999 * 109.46521 * 305.85383 * 4 3 2 32 32 H 1.09001 * 109.46250 * 65.83753 * 4 3 2 33 33 H 1.09003 * 109.50446 * 180.87918 * 5 4 3 34 34 H 1.08994 * 109.50250 * 60.76514 * 5 4 3 35 35 H 1.09001 * 109.47017 * 269.99774 * 9 8 6 36 36 H 1.08999 * 109.47701 * 29.99502 * 9 8 6 37 37 H 1.08997 * 109.47346 * 150.00087 * 9 8 6 38 38 H 1.09000 * 109.47335 * 60.00047 * 12 10 8 39 39 H 1.08998 * 109.47423 * 300.00242 * 12 10 8 40 40 H 1.08994 * 109.47074 * 60.00312 * 13 12 10 41 41 H 1.08998 * 109.47285 * 300.00147 * 13 12 10 42 42 H 0.97005 * 119.99661 * 359.97438 * 17 16 14 43 43 H 1.09005 * 109.50571 * 62.28757 * 22 6 5 44 44 H 1.08996 * 109.50769 * 182.36044 * 22 6 5 45 45 H 1.08999 * 109.46571 * 180.02562 * 25 23 3 46 46 H 1.08994 * 109.46729 * 300.04842 * 25 23 3 47 47 H 1.08992 * 109.47141 * 60.04831 * 25 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.2937 2.1998 0.9826 5 6 1.7264 3.6621 0.8539 6 6 3.2353 3.7657 1.0921 7 1 3.4681 3.4404 2.1061 8 7 3.6651 5.1548 0.9129 9 6 3.4579 5.8254 -0.3730 10 6 4.2509 5.8157 1.9309 11 8 4.4219 5.2606 2.9956 12 6 4.6934 7.2443 1.7464 13 6 5.3232 7.7549 3.0439 14 6 5.7652 9.1838 2.8595 15 1 5.6118 9.6784 1.9117 16 6 6.3654 9.8596 3.9006 17 7 6.5526 9.2571 5.0546 18 14 6.9126 11.6310 3.6723 19 1 7.5239 12.1264 4.9316 20 1 7.9106 11.7032 2.5750 21 1 5.7376 12.4717 3.3289 22 6 3.9654 2.8705 0.0872 23 6 3.4679 1.4311 0.2381 24 1 3.6817 1.0768 1.2465 25 6 4.1802 0.5363 -0.7783 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3635 0.5139 0.8900 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 0.2221 2.1207 0.7994 32 1 1.5178 1.8421 1.9875 33 1 1.1989 4.2642 1.5938 34 1 1.4901 4.0248 -0.1464 35 1 4.3276 5.6657 -1.0103 36 1 2.5719 5.4156 -0.8580 37 1 3.3200 6.8939 -0.2075 38 1 3.8317 7.8618 1.4928 39 1 5.4270 7.2964 0.9418 40 1 6.1851 7.1374 3.2969 41 1 4.5901 7.7027 3.8488 42 1 6.2681 8.3373 5.1732 43 1 3.7645 3.2207 -0.9253 44 1 5.0378 2.9075 0.2788 45 1 5.2552 0.5701 -0.6014 46 1 3.8259 -0.4888 -0.6709 47 1 3.9668 0.8906 -1.7867 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000362194926.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:09 Heat of formation + Delta-G solvation = -49.920292 kcal Electronic energy + Delta-G solvation = -23080.694252 eV Core-core repulsion = 19876.695430 eV Total energy + Delta-G solvation = -3203.998821 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.27950 -38.88433 -35.86469 -33.82868 -33.43331 -32.62760 -30.79101 -29.35922 -27.33203 -26.69525 -25.55552 -24.29791 -22.22965 -21.89537 -20.81236 -19.73348 -18.58480 -17.09445 -16.51426 -16.07964 -15.82445 -15.43669 -15.29059 -14.93519 -14.32247 -14.04582 -13.69555 -13.57781 -13.35678 -13.17960 -12.65582 -12.40170 -12.35560 -12.21280 -12.10031 -11.99243 -11.97204 -11.92452 -11.52851 -11.46025 -11.21736 -11.00917 -10.81241 -10.58017 -10.54208 -10.11553 -10.07969 -9.86713 -9.18973 -8.54983 -8.50086 -8.41626 -8.26389 -6.30043 -3.99940 3.15018 3.23318 3.46212 3.48787 3.58118 3.67598 4.53963 4.58637 4.59997 4.66680 4.82185 4.87094 4.98703 5.09988 5.12759 5.16381 5.23460 5.31740 5.34760 5.39964 5.45193 5.47624 5.52642 5.54564 5.60988 5.66135 5.70170 5.75493 5.79015 5.84633 5.89049 5.98663 6.04723 6.12472 6.16042 6.25074 6.71102 6.81286 6.86443 6.88287 7.54453 7.59849 7.70436 8.22008 8.51682 8.68020 8.94237 9.73801 11.10923 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.039461 B = 0.002985 C = 0.002970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 709.391467 B = 9378.416854 C = 9426.867446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.050 3.950 3 N -0.534 5.534 4 C 0.053 3.947 5 C -0.125 4.125 6 C 0.137 3.863 7 H 0.095 0.905 8 N -0.622 5.622 9 C 0.080 3.920 10 C 0.511 3.489 11 O -0.539 6.539 12 C -0.120 4.120 13 C 0.024 3.976 14 C -0.608 4.608 15 H 0.049 0.951 16 C 0.014 3.986 17 N -0.911 5.911 18 Si 1.070 2.930 19 H -0.282 1.282 20 H -0.288 1.288 21 H -0.288 1.288 22 C -0.117 4.117 23 C 0.084 3.916 24 H 0.042 0.958 25 C -0.146 4.146 26 H 0.064 0.936 27 H 0.058 0.942 28 H 0.058 0.942 29 H 0.077 0.923 30 H 0.031 0.969 31 H 0.085 0.915 32 H 0.034 0.966 33 H 0.070 0.930 34 H 0.074 0.926 35 H 0.052 0.948 36 H 0.068 0.932 37 H 0.075 0.925 38 H 0.081 0.919 39 H 0.080 0.920 40 H 0.014 0.986 41 H 0.014 0.986 42 H 0.272 0.728 43 H 0.074 0.926 44 H 0.070 0.930 45 H 0.060 0.940 46 H 0.055 0.945 47 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.397 -17.894 -15.020 25.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.078 4.078 3 N -0.260 5.260 4 C -0.075 4.075 5 C -0.163 4.163 6 C 0.033 3.967 7 H 0.113 0.887 8 N -0.357 5.357 9 C -0.063 4.063 10 C 0.301 3.699 11 O -0.415 6.415 12 C -0.160 4.160 13 C -0.013 4.013 14 C -0.646 4.646 15 H 0.067 0.933 16 C -0.190 4.190 17 N -0.547 5.547 18 Si 0.898 3.102 19 H -0.208 1.208 20 H -0.215 1.215 21 H -0.215 1.215 22 C -0.156 4.156 23 C -0.025 4.025 24 H 0.060 0.940 25 C -0.203 4.203 26 H 0.083 0.917 27 H 0.077 0.923 28 H 0.077 0.923 29 H 0.095 0.905 30 H 0.050 0.950 31 H 0.103 0.897 32 H 0.052 0.948 33 H 0.089 0.911 34 H 0.093 0.907 35 H 0.071 0.929 36 H 0.087 0.913 37 H 0.094 0.906 38 H 0.099 0.901 39 H 0.098 0.902 40 H 0.032 0.968 41 H 0.032 0.968 42 H 0.083 0.917 43 H 0.093 0.907 44 H 0.088 0.912 45 H 0.079 0.921 46 H 0.074 0.926 47 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -10.657 -16.696 -14.117 24.324 hybrid contribution -0.625 -1.659 -0.171 1.781 sum -11.282 -18.355 -14.289 25.853 Atomic orbital electron populations 1.21959 0.95139 1.01817 1.02560 1.22103 0.95529 0.89399 1.00764 1.62071 1.03543 1.10397 1.49969 1.22162 0.99003 0.92964 0.93388 1.21948 0.95734 0.95829 1.02821 1.21018 0.93239 0.81696 1.00707 0.88702 1.48043 1.61682 1.12594 1.13366 1.21724 1.01146 0.98347 0.85127 1.21589 0.75788 0.89722 0.82766 1.90636 1.54910 1.69574 1.26394 1.21731 1.01206 0.89572 1.03479 1.19020 0.95541 0.95971 0.90801 1.22031 1.43950 0.97804 1.00817 0.93293 1.25852 0.94662 1.05667 0.92794 1.70736 1.44614 1.14714 1.24651 0.83540 0.76329 0.74535 0.75774 1.20777 1.21467 1.21474 1.21962 0.99941 0.93351 1.00326 1.21590 0.87272 0.95766 0.97839 0.94005 1.21880 0.99955 0.98893 0.99587 0.91740 0.92287 0.92295 0.90454 0.95046 0.89714 0.94791 0.91127 0.90719 0.92945 0.91335 0.90621 0.90122 0.90151 0.96809 0.96816 0.91745 0.90737 0.91175 0.92066 0.92562 0.91709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.05 9.16 37.15 0.34 -0.71 16 2 C 0.05 0.39 5.08 -3.83 -0.02 0.37 16 3 N -0.53 -5.05 4.64 -226.69 -1.05 -6.10 16 4 C 0.05 0.52 4.85 -3.84 -0.02 0.50 16 5 C -0.12 -1.39 5.40 -26.65 -0.14 -1.54 16 6 C 0.14 1.85 2.59 -67.81 -0.18 1.68 16 7 H 0.09 1.56 6.90 -51.93 -0.36 1.20 16 8 N -0.62 -9.43 2.77 -173.81 -0.48 -9.91 16 9 C 0.08 0.92 9.26 59.84 0.55 1.47 16 10 C 0.51 10.27 7.67 -10.99 -0.08 10.18 16 11 O -0.54 -12.99 15.31 5.55 0.09 -12.91 16 12 C -0.12 -2.54 4.19 -27.88 -0.12 -2.65 16 13 C 0.02 0.66 3.57 -27.88 -0.10 0.56 16 14 C -0.61 -17.73 9.11 -34.44 -0.31 -18.04 16 15 H 0.05 1.36 7.74 -52.49 -0.41 0.95 16 16 C 0.01 0.43 5.46 -17.82 -0.10 0.33 16 17 N -0.91 -29.19 13.65 55.43 0.76 -28.43 16 18 Si 1.07 25.70 29.90 -169.99 -5.08 20.62 16 19 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 20 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 21 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 22 C -0.12 -1.33 4.69 -26.66 -0.13 -1.46 16 23 C 0.08 0.84 2.40 -67.72 -0.16 0.68 16 24 H 0.04 0.47 8.14 -51.93 -0.42 0.04 16 25 C -0.15 -1.20 8.78 37.16 0.33 -0.88 16 26 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.06 0.40 6.21 -51.93 -0.32 0.08 16 29 H 0.08 0.56 6.84 -51.93 -0.36 0.21 16 30 H 0.03 0.26 8.08 -51.92 -0.42 -0.16 16 31 H 0.08 0.72 5.81 -51.93 -0.30 0.42 16 32 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 34 H 0.07 0.78 6.57 -51.93 -0.34 0.44 16 35 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.07 0.64 6.37 -51.93 -0.33 0.31 16 37 H 0.08 0.87 6.44 -51.93 -0.33 0.53 16 38 H 0.08 1.57 7.40 -51.93 -0.38 1.19 16 39 H 0.08 1.58 8.11 -51.93 -0.42 1.16 16 40 H 0.01 0.40 7.96 -51.93 -0.41 -0.01 16 41 H 0.01 0.40 7.97 -51.93 -0.41 -0.01 16 42 H 0.27 8.85 7.22 -40.82 -0.29 8.56 16 43 H 0.07 0.80 7.60 -51.93 -0.39 0.41 16 44 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 45 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 46 H 0.06 0.41 6.55 -51.93 -0.34 0.07 16 47 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 LS Contribution 356.88 15.07 5.38 5.38 Total: -1.00 -34.15 356.88 -8.97 -43.12 By element: Atomic # 1 Polarization: 6.17 SS G_CDS: -8.43 Total: -2.27 kcal Atomic # 6 Polarization: -9.36 SS G_CDS: -0.14 Total: -9.50 kcal Atomic # 7 Polarization: -43.67 SS G_CDS: -0.78 Total: -44.44 kcal Atomic # 8 Polarization: -12.99 SS G_CDS: 0.09 Total: -12.91 kcal Atomic # 14 Polarization: 25.70 SS G_CDS: -5.08 Total: 20.62 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -34.15 -8.97 -43.12 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362194926.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.805 kcal (2) G-P(sol) polarization free energy of solvation -34.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.115 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds