Wall clock time and date at job start Tue Mar 31 2020 05:24:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53000 * 109.47409 * 2 1 4 4 C 1.52994 * 109.47209 * 120.00339 * 2 1 3 5 5 C 1.53003 * 109.47420 * 64.99501 * 4 2 1 6 6 C 1.52994 * 109.47420 * 179.97438 * 5 4 2 7 7 H 1.09004 * 109.46901 * 55.00375 * 6 5 4 8 8 C 1.53000 * 109.47212 * 175.00039 * 6 5 4 9 9 N 1.46506 * 109.47251 * 295.00339 * 6 5 4 10 10 C 1.34780 * 119.99745 * 154.99889 * 9 6 5 11 11 O 1.21590 * 119.99993 * 359.97438 * 10 9 6 12 12 N 1.34777 * 119.99704 * 180.02562 * 10 9 6 13 13 C 1.46498 * 119.99966 * 180.02562 * 12 10 9 14 14 C 1.53000 * 109.47299 * 184.79547 * 13 12 10 15 15 C 1.50704 * 115.54588 * 294.81766 * 14 13 12 16 16 H 1.07995 * 120.00086 * 95.20380 * 15 14 13 17 17 C 1.37877 * 119.99726 * 274.92551 * 15 14 13 18 18 N 1.31515 * 120.00084 * 355.41881 * 17 15 14 19 19 Si 1.86796 * 120.00102 * 175.42113 * 17 15 14 20 20 H 1.48498 * 109.47239 * 90.00025 * 19 17 15 21 21 H 1.48493 * 109.47332 * 210.00070 * 19 17 15 22 22 H 1.48499 * 109.47076 * 330.00113 * 19 17 15 23 23 C 1.53000 * 117.50122 * 80.48247 * 14 13 12 24 24 C 1.52994 * 117.50156 * 149.14359 * 14 13 12 25 25 H 1.09007 * 109.47334 * 59.99735 * 1 2 3 26 26 H 1.09003 * 109.47498 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47306 * 300.00048 * 1 2 3 28 28 H 1.09004 * 109.47088 * 240.00101 * 2 1 3 29 29 H 1.09005 * 109.47146 * 180.02562 * 3 2 1 30 30 H 1.09001 * 109.47110 * 299.99944 * 3 2 1 31 31 H 1.08996 * 109.46926 * 59.99719 * 3 2 1 32 32 H 1.09000 * 109.47216 * 304.99595 * 4 2 1 33 33 H 1.09003 * 109.47727 * 184.99878 * 4 2 1 34 34 H 1.09006 * 109.46868 * 60.00342 * 5 4 2 35 35 H 1.08995 * 109.47253 * 300.00833 * 5 4 2 36 36 H 1.09004 * 109.46913 * 60.00344 * 8 6 5 37 37 H 1.09007 * 109.47088 * 179.97438 * 8 6 5 38 38 H 1.08991 * 109.46941 * 300.00099 * 8 6 5 39 39 H 0.96991 * 119.99780 * 334.99818 * 9 6 5 40 40 H 0.96999 * 119.99492 * 359.97438 * 12 10 9 41 41 H 1.09001 * 109.47302 * 64.79393 * 13 12 10 42 42 H 1.09005 * 109.46853 * 304.79585 * 13 12 10 43 43 H 0.96997 * 120.00397 * 184.99696 * 18 17 15 44 44 H 1.08997 * 117.50142 * 215.00458 * 23 14 13 45 45 H 1.09000 * 117.49511 * 0.02905 * 23 14 13 46 46 H 1.08996 * 117.49909 * 359.97438 * 24 14 13 47 47 H 1.09006 * 117.50020 * 144.97002 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 1.2491 5 6 1.6351 -2.1955 1.1879 6 6 2.1457 -2.9170 2.4368 7 1 1.7827 -2.4032 3.3270 8 6 1.6356 -4.3594 2.4368 9 7 3.6107 -2.9170 2.4361 10 6 4.2851 -3.0189 3.5986 11 8 3.6775 -3.1103 4.6479 12 7 5.6328 -3.0184 3.5981 13 6 6.3659 -3.1297 4.8616 14 6 7.8656 -2.9846 4.5956 15 6 8.4873 -4.0784 3.7659 16 1 8.6014 -3.9488 2.6998 17 6 8.9156 -5.2420 4.3687 18 7 8.8649 -5.3619 5.6774 19 14 9.5681 -6.6484 3.3267 20 1 11.0343 -6.4940 3.1490 21 1 9.2847 -7.9391 4.0039 22 1 8.9038 -6.6299 1.9986 23 6 8.4195 -1.5684 4.4269 24 6 8.7220 -2.3623 5.7002 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 3.1301 1.4424 -0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6767 1.9563 0.8899 32 1 1.6054 -0.2618 2.1369 33 1 3.1263 -0.6444 1.2951 34 1 2.0697 -2.6551 0.3001 35 1 0.5488 -2.2724 1.1419 36 1 1.9986 -4.8732 1.5466 37 1 1.9998 -4.8736 3.3264 38 1 0.5457 -4.3594 2.4373 39 1 4.0953 -2.8436 1.5991 40 1 6.1174 -2.9450 2.7610 41 1 6.1691 -4.1029 5.3113 42 1 6.0396 -2.3426 5.5414 43 1 9.2326 -6.1500 6.1069 44 1 9.2335 -1.4278 3.7158 45 1 7.7155 -0.7400 4.5058 46 1 8.2170 -2.0558 6.6161 47 1 9.7350 -2.7443 5.8271 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000362331993.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:31 Heat of formation + Delta-G solvation = -42.821375 kcal Electronic energy + Delta-G solvation = -22670.518860 eV Core-core repulsion = 19466.827871 eV Total energy + Delta-G solvation = -3203.690989 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.57087 -37.59809 -36.66038 -35.10887 -33.22150 -31.94919 -31.06668 -29.02714 -27.38986 -26.16683 -25.06553 -23.95813 -21.28778 -20.92587 -20.23815 -20.03479 -19.35293 -17.69443 -16.35365 -15.85853 -15.34790 -14.82854 -14.65551 -14.51794 -14.31275 -14.10411 -13.81089 -13.25172 -13.18663 -12.83900 -12.60155 -12.58701 -12.38945 -12.02244 -11.81221 -11.70261 -11.54346 -11.50388 -10.98548 -10.97274 -10.90708 -10.79201 -10.67973 -10.52274 -10.44689 -10.21199 -9.65702 -9.41352 -9.01645 -8.77152 -8.46280 -8.20347 -7.93880 -6.05426 -4.15035 3.26155 3.29667 3.34457 3.35652 3.86178 4.36158 4.46518 4.69126 4.71682 4.86934 5.01891 5.09313 5.21831 5.22740 5.40804 5.41151 5.44380 5.54101 5.57163 5.62838 5.67131 5.72404 5.82308 5.83711 5.93106 6.02775 6.05716 6.13107 6.20910 6.26274 6.37181 6.37978 6.51511 6.62993 6.73512 6.89449 6.92898 7.14808 7.38230 7.45292 7.50317 7.67601 7.82873 8.36527 8.72861 8.86210 9.27428 9.51805 11.01754 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.019098 B = 0.003619 C = 0.003434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1465.807747 B = 7735.472614 C = 8152.722608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.098 4.098 3 C -0.148 4.148 4 C -0.115 4.115 5 C -0.127 4.127 6 C 0.162 3.838 7 H 0.084 0.916 8 C -0.164 4.164 9 N -0.748 5.748 10 C 0.698 3.302 11 O -0.605 6.605 12 N -0.722 5.722 13 C 0.183 3.817 14 C 0.025 3.975 15 C -0.499 4.499 16 H 0.059 0.941 17 C 0.073 3.927 18 N -0.874 5.874 19 Si 0.890 3.110 20 H -0.281 1.281 21 H -0.286 1.286 22 H -0.274 1.274 23 C -0.211 4.211 24 C -0.142 4.142 25 H 0.050 0.950 26 H 0.057 0.943 27 H 0.053 0.947 28 H 0.068 0.932 29 H 0.055 0.945 30 H 0.051 0.949 31 H 0.053 0.947 32 H 0.062 0.938 33 H 0.066 0.934 34 H 0.065 0.935 35 H 0.077 0.923 36 H 0.053 0.947 37 H 0.063 0.937 38 H 0.059 0.941 39 H 0.392 0.608 40 H 0.396 0.604 41 H 0.063 0.937 42 H 0.037 0.963 43 H 0.261 0.739 44 H 0.077 0.923 45 H 0.064 0.936 46 H 0.063 0.937 47 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.620 8.403 -11.308 19.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.116 4.116 3 C -0.206 4.206 4 C -0.152 4.152 5 C -0.164 4.164 6 C 0.056 3.944 7 H 0.102 0.898 8 C -0.223 4.223 9 N -0.404 5.404 10 C 0.398 3.602 11 O -0.485 6.485 12 N -0.374 5.374 13 C 0.059 3.941 14 C 0.024 3.976 15 C -0.536 4.536 16 H 0.077 0.923 17 C -0.131 4.131 18 N -0.510 5.510 19 Si 0.718 3.282 20 H -0.207 1.207 21 H -0.212 1.212 22 H -0.199 1.199 23 C -0.248 4.248 24 C -0.180 4.180 25 H 0.069 0.931 26 H 0.076 0.924 27 H 0.073 0.927 28 H 0.086 0.914 29 H 0.074 0.926 30 H 0.070 0.930 31 H 0.072 0.928 32 H 0.081 0.919 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.095 0.905 36 H 0.072 0.928 37 H 0.082 0.918 38 H 0.078 0.922 39 H 0.225 0.775 40 H 0.229 0.771 41 H 0.082 0.918 42 H 0.055 0.945 43 H 0.071 0.929 44 H 0.095 0.905 45 H 0.082 0.918 46 H 0.082 0.918 47 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -14.183 8.153 -10.140 19.247 hybrid contribution 0.950 -0.828 -1.222 1.755 sum -13.233 7.325 -11.362 18.917 Atomic orbital electron populations 1.21898 0.95478 1.01759 1.01498 1.21132 0.95744 0.96188 0.98543 1.21844 1.01125 0.96082 1.01510 1.21656 1.01416 0.94628 0.97549 1.21959 1.01498 0.95428 0.97561 1.20710 0.79293 0.95715 0.98676 0.89752 1.22209 1.00487 0.97038 1.02555 1.45211 1.06401 1.81000 1.07818 1.16074 0.82312 0.78023 0.83822 1.90859 1.68257 1.58751 1.30640 1.45161 1.03468 1.77215 1.11599 1.20823 0.90712 1.00073 0.82472 1.19048 0.89350 0.90189 0.98980 1.20336 1.41053 0.98872 0.93381 0.92307 1.24985 0.95158 0.98058 0.94896 1.69989 1.44030 1.28838 1.08181 0.86627 0.79024 0.82041 0.80505 1.20741 1.21206 1.19859 1.23005 1.03618 0.95934 1.02261 1.22462 1.01671 1.03116 0.90794 0.93092 0.92444 0.92743 0.91370 0.92618 0.92980 0.92751 0.91887 0.91559 0.91581 0.90484 0.92785 0.91816 0.92249 0.77521 0.77092 0.91846 0.94510 0.92903 0.90492 0.91760 0.91825 0.89553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 8.95 37.15 0.33 -0.73 16 2 C -0.10 -0.77 2.92 -90.63 -0.26 -1.03 16 3 C -0.15 -1.16 9.19 37.16 0.34 -0.82 16 4 C -0.11 -1.05 4.57 -26.73 -0.12 -1.18 16 5 C -0.13 -1.13 4.51 -26.73 -0.12 -1.25 16 6 C 0.16 1.99 2.57 -67.93 -0.17 1.81 16 7 H 0.08 1.22 7.58 -51.93 -0.39 0.82 16 8 C -0.16 -1.99 9.48 37.16 0.35 -1.64 16 9 N -0.75 -10.55 4.53 -58.67 -0.27 -10.82 16 10 C 0.70 13.38 8.53 -86.91 -0.74 12.64 16 11 O -0.61 -13.98 16.00 5.29 0.08 -13.90 16 12 N -0.72 -14.24 5.48 -65.22 -0.36 -14.60 16 13 C 0.18 4.23 5.50 -4.04 -0.02 4.21 16 14 C 0.03 0.59 1.47 -155.66 -0.23 0.37 16 15 C -0.50 -12.86 8.59 -34.44 -0.30 -13.16 16 16 H 0.06 1.48 7.82 -52.49 -0.41 1.07 16 17 C 0.07 1.95 5.43 -17.82 -0.10 1.85 16 18 N -0.87 -24.39 12.65 55.43 0.70 -23.69 16 19 Si 0.89 20.64 29.54 -169.99 -5.02 15.62 16 20 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 21 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 22 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 23 C -0.21 -4.44 9.96 -26.69 -0.27 -4.70 16 24 C -0.14 -3.30 9.14 -26.70 -0.24 -3.54 16 25 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 26 H 0.06 0.39 6.57 -51.93 -0.34 0.05 16 27 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 28 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 29 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 31 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.07 0.67 7.75 -51.93 -0.40 0.27 16 34 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 35 H 0.08 0.61 6.56 -51.93 -0.34 0.26 16 36 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 38 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.39 4.59 8.62 -40.82 -0.35 4.23 16 40 H 0.40 7.11 8.34 -40.82 -0.34 6.77 16 41 H 0.06 1.68 8.14 -51.93 -0.42 1.25 16 42 H 0.04 0.85 8.09 -51.93 -0.42 0.43 16 43 H 0.26 7.01 8.32 -40.82 -0.34 6.67 16 44 H 0.08 1.59 8.14 -51.93 -0.42 1.16 16 45 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 46 H 0.06 1.41 8.14 -51.93 -0.42 0.99 16 47 H 0.09 2.14 8.14 -51.93 -0.42 1.72 16 LS Contribution 380.27 15.07 5.73 5.73 Total: -1.00 -29.75 380.27 -9.58 -39.33 By element: Atomic # 1 Polarization: 18.40 SS G_CDS: -8.90 Total: 9.50 kcal Atomic # 6 Polarization: -5.62 SS G_CDS: -1.55 Total: -7.18 kcal Atomic # 7 Polarization: -49.19 SS G_CDS: 0.08 Total: -49.11 kcal Atomic # 8 Polarization: -13.98 SS G_CDS: 0.08 Total: -13.90 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.62 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -29.75 -9.58 -39.33 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362331993.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.495 kcal (2) G-P(sol) polarization free energy of solvation -29.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.326 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds