Wall clock time and date at job start Tue Mar 31 2020 05:27:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.47325 * 2 1 4 4 C 1.52995 * 109.46890 * 239.99792 * 2 1 3 5 5 H 1.09004 * 109.47180 * 60.00514 * 4 2 1 6 6 C 1.53005 * 109.47493 * 300.00089 * 4 2 1 7 7 C 1.50705 * 109.47434 * 179.97438 * 4 2 1 8 8 O 1.21283 * 119.99498 * 0.02562 * 7 4 2 9 9 N 1.34768 * 120.00534 * 180.02562 * 7 4 2 10 10 C 1.46504 * 120.00371 * 179.97438 * 9 7 4 11 11 C 1.52995 * 109.47271 * 179.97438 * 10 9 7 12 12 C 1.53043 * 109.46206 * 295.02951 * 11 10 9 13 13 C 1.53194 * 109.31174 * 178.60184 * 12 11 10 14 14 N 1.46922 * 108.76723 * 54.65482 * 13 12 11 15 15 C 1.36937 * 120.63260 * 126.36111 * 14 13 12 16 16 H 1.08000 * 120.00068 * 331.86966 * 15 14 13 17 17 C 1.38812 * 119.99964 * 151.86337 * 15 14 13 18 18 N 1.31615 * 120.00123 * 343.06158 * 17 15 14 19 19 Si 1.86807 * 119.99739 * 163.06443 * 17 15 14 20 20 H 1.48500 * 109.47130 * 0.02562 * 19 17 15 21 21 H 1.48502 * 109.46958 * 119.99822 * 19 17 15 22 22 H 1.48500 * 109.46875 * 239.99966 * 19 17 15 23 23 C 1.46927 * 118.73727 * 306.38309 * 14 13 12 24 24 C 1.53041 * 109.46273 * 174.97413 * 11 10 9 25 25 H 1.08994 * 109.47322 * 59.99847 * 1 2 3 26 26 H 1.09002 * 109.47437 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.46852 * 299.99840 * 1 2 3 28 28 H 1.09004 * 109.47309 * 119.99987 * 2 1 3 29 29 H 1.09004 * 109.46916 * 300.00227 * 3 2 1 30 30 H 1.09000 * 109.47025 * 60.00265 * 3 2 1 31 31 H 1.08997 * 109.47180 * 180.02562 * 3 2 1 32 32 H 1.09004 * 109.46929 * 299.99942 * 6 4 2 33 33 H 1.08997 * 109.46981 * 59.99966 * 6 4 2 34 34 H 1.09000 * 109.47212 * 179.97438 * 6 4 2 35 35 H 0.97011 * 119.99893 * 0.02562 * 9 7 4 36 36 H 1.08996 * 109.46943 * 300.00261 * 10 9 7 37 37 H 1.09004 * 109.46495 * 60.00168 * 10 9 7 38 38 H 1.09001 * 109.45992 * 55.00482 * 11 10 9 39 39 H 1.08996 * 109.49469 * 298.56491 * 12 11 10 40 40 H 1.09004 * 109.49704 * 58.66598 * 12 11 10 41 41 H 1.09008 * 109.59759 * 294.86827 * 13 12 11 42 42 H 1.08998 * 109.70258 * 174.50991 * 13 12 11 43 43 H 0.97003 * 119.99811 * 180.02562 * 18 17 15 44 44 H 1.08993 * 109.58796 * 293.82082 * 23 14 13 45 45 H 1.09008 * 109.70027 * 173.46539 * 23 14 13 46 46 H 1.09002 * 109.49542 * 301.33924 * 24 11 10 47 47 H 1.08997 * 109.49452 * 61.40164 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2492 5 1 1.6766 -0.2074 -2.1392 6 6 1.5299 -2.1638 -1.2492 7 6 3.5469 -0.7208 -1.2496 8 8 4.1534 -0.1957 -0.3400 9 7 4.2208 -1.3039 -2.2607 10 6 5.6858 -1.3029 -2.2614 11 6 6.1957 -2.0243 -3.5105 12 6 5.7911 -3.4989 -3.4485 13 6 6.2730 -4.2102 -4.7169 14 7 7.7176 -3.9868 -4.8643 15 6 8.5752 -5.0435 -5.0159 16 1 8.3250 -6.0066 -4.5960 17 6 9.7660 -4.8770 -5.7095 18 7 9.9292 -3.8345 -6.4962 19 14 11.1370 -6.1327 -5.5265 20 1 10.7063 -7.2030 -4.5915 21 1 11.4432 -6.7279 -6.8521 22 1 12.3508 -5.4657 -4.9909 23 6 8.2247 -2.6079 -4.8454 24 6 7.7208 -1.9146 -3.5758 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.6766 1.9563 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 3.1300 1.4424 -0.0005 32 1 1.8932 -2.6777 -0.3592 33 1 0.4399 -2.1638 -1.2492 34 1 1.8928 -2.6775 -2.1394 35 1 3.7357 -1.7236 -2.9885 36 1 6.0484 -0.2750 -2.2614 37 1 6.0498 -1.8166 -1.3715 38 1 5.7604 -1.5652 -4.3981 39 1 6.2466 -3.9647 -2.5747 40 1 4.7061 -3.5759 -3.3785 41 1 5.7504 -3.8057 -5.5839 42 1 6.0748 -5.2790 -4.6367 43 1 10.7612 -3.7184 -6.9811 44 1 7.8613 -2.0729 -5.7227 45 1 9.3148 -2.6172 -4.8486 46 1 8.0094 -0.8637 -3.5962 47 1 8.1579 -2.3950 -2.7004 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000362529774.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:57 Heat of formation + Delta-G solvation = -47.904498 kcal Electronic energy + Delta-G solvation = -22959.608266 eV Core-core repulsion = 19755.696856 eV Total energy + Delta-G solvation = -3203.911410 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.19533 -37.98745 -36.29223 -34.91981 -32.96686 -31.26782 -30.47833 -29.67268 -27.54439 -26.73666 -24.65912 -23.77908 -22.25906 -21.31673 -20.77678 -19.75725 -19.04220 -17.30014 -16.70460 -15.97967 -15.33931 -14.92349 -14.80876 -14.43552 -14.09223 -13.95067 -13.63696 -13.50064 -13.25457 -12.96200 -12.50379 -12.38738 -12.32158 -12.28483 -12.18055 -11.90758 -11.70613 -11.35418 -11.13687 -10.99356 -10.90216 -10.75611 -10.73893 -10.50304 -10.24421 -10.19688 -9.94104 -9.64284 -9.54127 -9.36861 -8.92450 -8.47727 -6.67409 -5.79576 -3.21997 2.66789 3.24553 3.36693 3.44739 3.46866 4.42498 4.49226 4.59621 4.66960 4.99075 5.10377 5.14313 5.21401 5.24025 5.30972 5.37979 5.41665 5.47713 5.56545 5.60165 5.62278 5.68291 5.75105 5.87151 5.89761 5.93879 6.00972 6.05095 6.14358 6.19734 6.31247 6.33751 6.44473 6.54146 6.59917 6.69660 6.76202 6.80901 6.97265 7.36350 7.56284 7.65505 7.79405 8.27934 8.44853 9.21113 9.84636 10.41283 11.28963 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.042841 B = 0.003011 C = 0.002921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 653.428420 B = 9298.445066 C = 9582.805779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.075 4.075 3 C -0.160 4.160 4 C -0.108 4.108 5 H 0.095 0.905 6 C -0.147 4.147 7 C 0.513 3.487 8 O -0.541 6.541 9 N -0.725 5.725 10 C 0.123 3.877 11 C -0.090 4.090 12 C -0.126 4.126 13 C 0.145 3.855 14 N -0.593 5.593 15 C -0.251 4.251 16 H 0.065 0.935 17 C 0.001 3.999 18 N -0.903 5.903 19 Si 0.901 3.099 20 H -0.278 1.278 21 H -0.290 1.290 22 H -0.289 1.289 23 C 0.172 3.828 24 C -0.133 4.133 25 H 0.054 0.946 26 H 0.057 0.943 27 H 0.055 0.945 28 H 0.075 0.925 29 H 0.045 0.955 30 H 0.049 0.951 31 H 0.083 0.917 32 H 0.061 0.939 33 H 0.069 0.931 34 H 0.061 0.939 35 H 0.399 0.601 36 H 0.062 0.938 37 H 0.064 0.936 38 H 0.068 0.932 39 H 0.059 0.941 40 H 0.046 0.954 41 H 0.016 0.984 42 H 0.052 0.948 43 H 0.253 0.747 44 H 0.017 0.983 45 H 0.088 0.912 46 H 0.050 0.950 47 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.520 6.983 9.224 20.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.094 4.094 3 C -0.217 4.217 4 C -0.129 4.129 5 H 0.113 0.887 6 C -0.204 4.204 7 C 0.300 3.700 8 O -0.418 6.418 9 N -0.376 5.376 10 C 0.000 4.000 11 C -0.109 4.109 12 C -0.166 4.166 13 C 0.019 3.981 14 N -0.315 5.315 15 C -0.381 4.381 16 H 0.083 0.917 17 C -0.197 4.197 18 N -0.548 5.548 19 Si 0.731 3.269 20 H -0.203 1.203 21 H -0.217 1.217 22 H -0.215 1.215 23 C 0.046 3.954 24 C -0.173 4.173 25 H 0.073 0.927 26 H 0.076 0.924 27 H 0.074 0.926 28 H 0.093 0.907 29 H 0.064 0.936 30 H 0.068 0.932 31 H 0.102 0.898 32 H 0.080 0.920 33 H 0.088 0.912 34 H 0.080 0.920 35 H 0.234 0.766 36 H 0.081 0.919 37 H 0.083 0.917 38 H 0.086 0.914 39 H 0.078 0.922 40 H 0.065 0.935 41 H 0.034 0.966 42 H 0.071 0.929 43 H 0.063 0.937 44 H 0.035 0.965 45 H 0.106 0.894 46 H 0.069 0.931 47 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -16.914 7.377 9.765 20.877 hybrid contribution 0.521 -0.775 -0.414 1.021 sum -16.393 6.602 9.352 19.994 Atomic orbital electron populations 1.21929 0.95143 1.01784 1.01813 1.20883 0.94947 0.96743 0.96814 1.22077 1.04048 0.94837 1.00713 1.21405 0.91971 0.98572 1.00990 0.88738 1.21847 1.01870 0.94012 1.02704 1.20633 0.89922 0.77710 0.81756 1.90623 1.70475 1.44776 1.35953 1.46154 1.08011 1.58315 1.25110 1.21564 0.78535 1.00597 0.99330 1.21307 0.97848 0.95911 0.95824 1.22067 0.98399 0.95109 1.00982 1.20888 0.86409 0.97571 0.93250 1.44056 1.00261 1.02664 1.84559 1.19225 0.99552 0.91413 1.27917 0.91719 1.25047 1.00178 0.97964 0.96515 1.70037 1.25486 1.30387 1.28856 0.86241 0.82371 0.80881 0.77393 1.20267 1.21745 1.21540 1.20755 1.00267 0.83492 0.90883 1.22176 0.93032 0.99728 1.02326 0.92722 0.92377 0.92571 0.90653 0.93604 0.93188 0.89793 0.92026 0.91187 0.92019 0.76608 0.91929 0.91727 0.91388 0.92206 0.93526 0.96649 0.92908 0.93692 0.96485 0.89420 0.93102 0.92419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 8.84 37.16 0.33 -0.73 16 2 C -0.07 -0.70 2.15 -90.63 -0.19 -0.89 16 3 C -0.16 -1.63 8.87 37.16 0.33 -1.30 16 4 C -0.11 -0.99 2.32 -91.77 -0.21 -1.20 16 5 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 6 C -0.15 -1.12 8.74 37.16 0.32 -0.79 16 7 C 0.51 6.45 6.86 -10.99 -0.08 6.37 16 8 O -0.54 -8.69 13.66 5.56 0.08 -8.61 16 9 N -0.72 -8.65 5.16 -60.29 -0.31 -8.96 16 10 C 0.12 1.74 5.06 -4.04 -0.02 1.72 16 11 C -0.09 -1.40 2.19 -90.58 -0.20 -1.60 16 12 C -0.13 -2.05 5.25 -26.61 -0.14 -2.19 16 13 C 0.15 2.93 6.52 -3.71 -0.02 2.91 16 14 N -0.59 -14.61 2.99 -172.32 -0.52 -15.12 16 15 C -0.25 -6.86 9.58 -15.06 -0.14 -7.00 16 16 H 0.07 1.74 7.89 -52.49 -0.41 1.33 16 17 C 0.00 0.04 4.92 -17.43 -0.09 -0.05 16 18 N -0.90 -26.10 11.19 55.49 0.62 -25.48 16 19 Si 0.90 21.64 29.59 -169.99 -5.03 16.61 16 20 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 21 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 22 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 23 C 0.17 4.02 5.30 -3.71 -0.02 4.00 16 24 C -0.13 -2.45 5.36 -26.61 -0.14 -2.60 16 25 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 26 H 0.06 0.36 6.43 -51.93 -0.33 0.03 16 27 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.08 0.80 8.10 -51.93 -0.42 0.38 16 29 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.08 1.09 5.51 -51.93 -0.29 0.80 16 32 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.07 0.43 6.43 -51.93 -0.33 0.09 16 34 H 0.06 0.43 7.57 -51.93 -0.39 0.04 16 35 H 0.40 3.96 7.07 -40.82 -0.29 3.67 16 36 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 37 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 38 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 39 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 40 H 0.05 0.62 7.15 -51.93 -0.37 0.25 16 41 H 0.02 0.31 8.14 -51.92 -0.42 -0.11 16 42 H 0.05 1.05 7.93 -51.93 -0.41 0.64 16 43 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 44 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 45 H 0.09 2.32 6.06 -51.92 -0.31 2.00 16 46 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 47 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 LS Contribution 358.31 15.07 5.40 5.40 Total: -1.00 -30.54 358.31 -8.66 -39.19 By element: Atomic # 1 Polarization: 8.96 SS G_CDS: -8.62 Total: 0.33 kcal Atomic # 6 Polarization: -3.08 SS G_CDS: -0.27 Total: -3.36 kcal Atomic # 7 Polarization: -49.36 SS G_CDS: -0.21 Total: -49.56 kcal Atomic # 8 Polarization: -8.69 SS G_CDS: 0.08 Total: -8.61 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.03 Total: 16.61 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -30.54 -8.66 -39.19 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362529774.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.711 kcal (2) G-P(sol) polarization free energy of solvation -30.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.193 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds