Wall clock time and date at job start Tue Mar 31 2020 05:53:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53005 * 109.47559 * 2 1 4 4 C 1.53002 * 109.47320 * 120.00661 * 2 1 3 5 5 N 1.46494 * 109.47001 * 64.99504 * 4 2 1 6 6 C 1.34784 * 119.99635 * 180.02562 * 5 4 2 7 7 O 1.21279 * 119.99925 * 359.97438 * 6 5 4 8 8 C 1.50700 * 119.99961 * 180.02562 * 6 5 4 9 9 H 1.09004 * 109.46932 * 300.00223 * 8 6 5 10 10 C 1.53002 * 109.47318 * 59.99577 * 8 6 5 11 11 N 1.46895 * 109.47051 * 180.02562 * 8 6 5 12 12 C 1.46848 * 110.99669 * 299.20378 * 11 8 6 13 13 C 1.53042 * 109.52140 * 174.16561 * 12 11 8 14 14 C 1.53114 * 109.28083 * 59.17953 * 13 12 11 15 15 C 1.50700 * 109.52395 * 182.43930 * 14 13 12 16 16 H 1.08004 * 119.99858 * 119.68540 * 15 14 13 17 17 C 1.37878 * 119.99964 * 299.68856 * 15 14 13 18 18 N 1.31510 * 120.00120 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 119.99586 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47370 * 90.00190 * 19 17 15 21 21 H 1.48509 * 109.47025 * 209.99669 * 19 17 15 22 22 H 1.48499 * 109.47463 * 329.99443 * 19 17 15 23 23 C 1.53112 * 109.16186 * 302.34672 * 14 13 12 24 24 C 1.46852 * 110.99884 * 175.00242 * 11 8 6 25 25 H 1.09008 * 109.47216 * 59.99593 * 1 2 3 26 26 H 1.08995 * 109.47420 * 179.97438 * 1 2 3 27 27 H 1.09006 * 109.46819 * 299.99918 * 1 2 3 28 28 H 1.09006 * 109.46819 * 240.00082 * 2 1 3 29 29 H 1.08998 * 109.47409 * 180.02562 * 3 2 1 30 30 H 1.08998 * 109.47086 * 300.00417 * 3 2 1 31 31 H 1.09000 * 109.46623 * 59.99966 * 3 2 1 32 32 H 1.09005 * 109.46767 * 304.99570 * 4 2 1 33 33 H 1.09002 * 109.47113 * 184.99910 * 4 2 1 34 34 H 0.96995 * 120.00292 * 0.27801 * 5 4 2 35 35 H 1.08996 * 109.46948 * 180.02562 * 10 8 6 36 36 H 1.08996 * 109.46989 * 300.00583 * 10 8 6 37 37 H 1.09002 * 109.46768 * 59.99928 * 10 8 6 38 38 H 1.09001 * 109.46553 * 294.17768 * 12 11 8 39 39 H 1.09000 * 109.45975 * 54.15261 * 12 11 8 40 40 H 1.09004 * 109.49911 * 299.23681 * 13 12 11 41 41 H 1.08998 * 109.50330 * 179.12604 * 13 12 11 42 42 H 1.08998 * 109.51898 * 62.25149 * 14 13 12 43 43 H 0.97002 * 120.00287 * 179.97438 * 18 17 15 44 44 H 1.09000 * 109.50497 * 297.71400 * 23 14 13 45 45 H 1.09003 * 109.50649 * 177.58812 * 23 14 13 46 46 H 1.09002 * 109.45938 * 305.84868 * 24 11 8 47 47 H 1.08998 * 109.46499 * 65.81482 * 24 11 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7214 1.2492 5 7 1.6524 -2.1329 1.1904 6 6 1.9955 -2.9682 2.1910 7 8 2.6256 -2.5513 3.1397 8 6 1.5973 -4.4203 2.1303 9 1 0.5110 -4.4975 2.0836 10 6 2.2082 -5.0651 0.8845 11 7 2.0859 -5.1126 3.3302 12 6 3.5503 -5.0453 3.4170 13 6 4.0120 -5.6466 4.7464 14 6 3.5432 -7.1016 4.8331 15 6 3.9432 -7.6810 6.1656 16 1 3.1868 -8.0462 6.8446 17 6 5.2746 -7.7449 6.5179 18 7 6.1957 -7.3006 5.6910 19 14 5.7703 -8.4637 8.1692 20 1 5.9945 -9.9247 8.0260 21 1 7.0216 -7.8145 8.6362 22 1 4.6891 -8.2234 9.1584 23 6 2.0194 -7.1480 4.6916 24 6 1.6154 -6.5033 3.3637 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8901 28 1 1.8932 -0.5139 -0.8901 29 1 3.1301 1.4425 -0.0005 30 1 1.6767 1.9564 -0.8899 31 1 1.6767 1.9563 0.8900 32 1 1.6054 -0.2619 2.1370 33 1 3.1263 -0.6445 1.2950 34 1 1.1519 -2.4671 0.4297 35 1 1.9198 -6.1153 0.8404 36 1 1.8453 -4.5513 -0.0056 37 1 3.2945 -4.9879 0.9311 38 1 3.9891 -5.6071 2.5924 39 1 3.8701 -4.0049 3.3583 40 1 3.5845 -5.0767 5.5715 41 1 5.0999 -5.6106 4.8037 42 1 4.0013 -7.6803 4.0310 43 1 7.1324 -7.3452 5.9389 44 1 1.5605 -6.6018 5.5158 45 1 1.6835 -8.1849 4.7096 46 1 0.5299 -6.5218 3.2664 47 1 2.0633 -7.0582 2.5394 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397215470.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:11 Heat of formation + Delta-G solvation = -50.605424 kcal Electronic energy + Delta-G solvation = -23259.106897 eV Core-core repulsion = 20055.078366 eV Total energy + Delta-G solvation = -3204.028531 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.12153 -38.02717 -36.62373 -34.32757 -33.34406 -31.80836 -29.66667 -29.15974 -27.54002 -26.50794 -25.62432 -23.69820 -22.04795 -21.36642 -20.75996 -19.73939 -18.26237 -16.76362 -16.44729 -16.20609 -15.65661 -15.13385 -14.55134 -14.46615 -14.15260 -13.99391 -13.68780 -13.60425 -13.10613 -12.83230 -12.68500 -12.51302 -12.39131 -12.15150 -11.96679 -11.65181 -11.50445 -11.46421 -11.24831 -11.14050 -11.00968 -10.86520 -10.64486 -10.43178 -10.03778 -9.83889 -9.52832 -9.22302 -9.02137 -8.85800 -8.47040 -8.17797 -7.62010 -5.87511 -3.92470 2.85153 3.14597 3.37453 3.44028 3.48038 4.42569 4.47958 4.53669 4.54107 4.68581 4.85531 5.15061 5.20114 5.20503 5.27739 5.37313 5.42720 5.47473 5.53006 5.62030 5.64057 5.69780 5.77036 5.84099 5.91329 5.96785 5.97736 6.07977 6.26500 6.37769 6.40008 6.53241 6.75275 6.88566 6.98362 7.17128 7.29067 7.46142 7.61476 7.72936 7.82209 7.94529 8.18124 8.29410 8.43812 8.59631 9.11086 9.71189 11.18637 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.031965 B = 0.003399 C = 0.003215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 875.748029 B = 8234.770932 C = 8707.991419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.108 4.108 3 C -0.145 4.145 4 C 0.124 3.876 5 N -0.737 5.737 6 C 0.517 3.483 7 O -0.509 6.509 8 C 0.063 3.937 9 H 0.099 0.901 10 C -0.183 4.183 11 N -0.512 5.512 12 C 0.046 3.954 13 C -0.100 4.100 14 C 0.047 3.953 15 C -0.509 4.509 16 H 0.053 0.947 17 C 0.060 3.940 18 N -0.891 5.891 19 Si 0.889 3.111 20 H -0.283 1.283 21 H -0.287 1.287 22 H -0.275 1.275 23 C -0.106 4.106 24 C 0.060 3.940 25 H 0.056 0.944 26 H 0.055 0.945 27 H 0.058 0.942 28 H 0.075 0.925 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.058 0.942 32 H 0.066 0.934 33 H 0.065 0.935 34 H 0.396 0.604 35 H 0.069 0.931 36 H 0.057 0.943 37 H 0.066 0.934 38 H 0.017 0.983 39 H 0.082 0.918 40 H 0.043 0.957 41 H 0.090 0.910 42 H 0.019 0.981 43 H 0.258 0.742 44 H 0.057 0.943 45 H 0.049 0.951 46 H 0.056 0.944 47 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.135 12.600 -15.455 22.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.127 4.127 3 C -0.203 4.203 4 C 0.000 4.000 5 N -0.392 5.392 6 C 0.303 3.697 7 O -0.383 6.383 8 C -0.049 4.049 9 H 0.117 0.883 10 C -0.242 4.242 11 N -0.236 5.236 12 C -0.081 4.081 13 C -0.138 4.138 14 C 0.029 3.971 15 C -0.547 4.547 16 H 0.072 0.928 17 C -0.141 4.141 18 N -0.531 5.531 19 Si 0.717 3.283 20 H -0.209 1.209 21 H -0.213 1.213 22 H -0.200 1.200 23 C -0.143 4.143 24 C -0.068 4.068 25 H 0.075 0.925 26 H 0.074 0.926 27 H 0.077 0.923 28 H 0.094 0.906 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.085 0.915 33 H 0.084 0.916 34 H 0.230 0.770 35 H 0.088 0.912 36 H 0.076 0.924 37 H 0.085 0.915 38 H 0.035 0.965 39 H 0.100 0.900 40 H 0.061 0.939 41 H 0.108 0.892 42 H 0.037 0.963 43 H 0.068 0.932 44 H 0.075 0.925 45 H 0.068 0.932 46 H 0.074 0.926 47 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -10.653 13.167 -14.313 22.174 hybrid contribution 0.397 -0.959 -0.278 1.075 sum -10.256 12.208 -14.591 21.613 Atomic orbital electron populations 1.21870 0.94730 1.01942 1.02058 1.21355 0.96428 0.96936 0.97978 1.21764 1.01354 0.95017 1.02173 1.21376 1.00060 0.80708 0.97821 1.46046 1.59512 1.09589 1.24035 1.20643 0.79198 0.88004 0.81881 1.90689 1.37811 1.77302 1.32457 1.21627 1.00806 0.91094 0.91403 0.88293 1.22420 1.02672 1.02002 0.97139 1.62022 1.13221 1.14837 1.33554 1.22569 0.84634 1.01431 0.99467 1.21596 1.02730 0.96851 0.92609 1.18699 0.88798 0.93009 0.96618 1.21214 0.91837 1.39449 1.02215 0.92830 1.24968 0.96762 0.95519 0.96817 1.69887 1.00421 1.47021 1.35749 0.86646 0.77971 0.79037 0.84623 1.20896 1.21337 1.19981 1.21670 1.00325 0.97816 0.94525 1.22173 0.98046 0.87484 0.99088 0.92519 0.92582 0.92338 0.90647 0.92286 0.92273 0.92273 0.91537 0.91633 0.76986 0.91162 0.92406 0.91481 0.96474 0.90003 0.93860 0.89198 0.96309 0.93197 0.92458 0.93199 0.92565 0.95468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.92 9.07 37.15 0.34 -0.58 16 2 C -0.11 -0.74 2.95 -90.62 -0.27 -1.01 16 3 C -0.15 -0.91 9.19 37.16 0.34 -0.57 16 4 C 0.12 1.24 5.06 -4.04 -0.02 1.22 16 5 N -0.74 -7.85 5.17 -60.29 -0.31 -8.16 16 6 C 0.52 7.81 6.84 -10.98 -0.08 7.73 16 7 O -0.51 -10.11 13.90 5.56 0.08 -10.03 16 8 C 0.06 0.91 2.77 -68.87 -0.19 0.72 16 9 H 0.10 1.21 8.08 -51.93 -0.42 0.79 16 10 C -0.18 -2.24 8.40 37.16 0.31 -1.93 16 11 N -0.51 -9.67 4.44 -228.07 -1.01 -10.68 16 12 C 0.05 0.99 4.48 -3.83 -0.02 0.97 16 13 C -0.10 -2.55 5.12 -26.65 -0.14 -2.69 16 14 C 0.05 1.23 2.16 -91.65 -0.20 1.03 16 15 C -0.51 -14.50 8.56 -34.44 -0.29 -14.80 16 16 H 0.05 1.51 7.74 -52.48 -0.41 1.10 16 17 C 0.06 1.72 5.31 -17.82 -0.09 1.62 16 18 N -0.89 -26.33 11.37 55.43 0.63 -25.70 16 19 Si 0.89 22.02 29.54 -169.99 -5.02 17.00 16 20 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 21 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 22 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 23 C -0.11 -2.30 5.32 -26.65 -0.14 -2.44 16 24 C 0.06 1.08 5.02 -3.83 -0.02 1.07 16 25 H 0.06 0.30 8.14 -51.92 -0.42 -0.12 16 26 H 0.06 0.33 7.19 -51.93 -0.37 -0.04 16 27 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 30 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 32 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 34 H 0.40 3.06 7.07 -40.82 -0.29 2.77 16 35 H 0.07 0.86 6.65 -51.93 -0.35 0.51 16 36 H 0.06 0.52 7.56 -51.93 -0.39 0.12 16 37 H 0.07 0.95 6.53 -51.93 -0.34 0.62 16 38 H 0.02 0.37 6.62 -51.93 -0.34 0.02 16 39 H 0.08 1.84 5.31 -51.93 -0.28 1.57 16 40 H 0.04 1.16 8.14 -51.93 -0.42 0.74 16 41 H 0.09 2.54 6.17 -51.93 -0.32 2.22 16 42 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 43 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 44 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 45 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 46 H 0.06 0.88 8.08 -51.93 -0.42 0.46 16 47 H 0.03 0.49 6.73 -51.93 -0.35 0.14 16 LS Contribution 355.75 15.07 5.36 5.36 Total: -1.00 -32.28 355.75 -9.22 -41.51 By element: Atomic # 1 Polarization: 8.84 SS G_CDS: -8.48 Total: 0.35 kcal Atomic # 6 Polarization: -9.18 SS G_CDS: -0.47 Total: -9.65 kcal Atomic # 7 Polarization: -43.85 SS G_CDS: -0.69 Total: -44.54 kcal Atomic # 8 Polarization: -10.11 SS G_CDS: 0.08 Total: -10.03 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -32.28 -9.22 -41.51 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397215470.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.100 kcal (2) G-P(sol) polarization free energy of solvation -32.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.506 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds