Wall clock time and date at job start Tue Mar 31 2020 05:53:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52998 * 109.47172 * 2 1 4 4 C 1.52998 * 109.47270 * 119.99631 * 2 1 3 5 5 N 1.46498 * 109.46941 * 65.00073 * 4 2 1 6 6 C 1.34782 * 120.00445 * 179.97438 * 5 4 2 7 7 O 1.21274 * 119.99626 * 0.02562 * 6 5 4 8 8 C 1.50700 * 120.00369 * 179.97438 * 6 5 4 9 9 H 1.09003 * 109.46795 * 31.84732 * 8 6 5 10 10 C 1.52999 * 109.47080 * 271.84704 * 8 6 5 11 11 N 1.46899 * 109.46992 * 151.84226 * 8 6 5 12 12 C 1.46844 * 111.00305 * 306.50330 * 11 8 6 13 13 C 1.53035 * 109.52398 * 185.83845 * 12 11 8 14 14 C 1.53119 * 109.27806 * 300.81944 * 13 12 11 15 15 C 1.50699 * 109.52249 * 177.55620 * 14 13 12 16 16 H 1.08004 * 120.00222 * 0.02562 * 15 14 13 17 17 C 1.37877 * 120.00023 * 179.97438 * 15 14 13 18 18 N 1.31510 * 119.99692 * 0.02562 * 17 15 14 19 19 Si 1.86796 * 120.00030 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.47350 * 0.02562 * 19 17 15 21 21 H 1.48498 * 109.47289 * 120.00613 * 19 17 15 22 22 H 1.48501 * 109.47327 * 240.00728 * 19 17 15 23 23 C 1.53121 * 109.16192 * 57.65470 * 14 13 12 24 24 C 1.46851 * 110.99609 * 70.71088 * 11 8 6 25 25 H 1.09006 * 109.47396 * 300.00216 * 1 2 3 26 26 H 1.09004 * 109.47241 * 59.99933 * 1 2 3 27 27 H 1.09004 * 109.47292 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47334 * 239.99753 * 2 1 3 29 29 H 1.09002 * 109.47527 * 179.97438 * 3 2 1 30 30 H 1.08998 * 109.47424 * 299.99890 * 3 2 1 31 31 H 1.09007 * 109.47334 * 60.00138 * 3 2 1 32 32 H 1.09001 * 109.47062 * 305.00517 * 4 2 1 33 33 H 1.08998 * 109.47417 * 184.99858 * 4 2 1 34 34 H 0.97004 * 120.00333 * 0.02562 * 5 4 2 35 35 H 1.09000 * 109.46764 * 179.97438 * 10 8 6 36 36 H 1.08994 * 109.47113 * 299.99563 * 10 8 6 37 37 H 1.08998 * 109.47416 * 60.00126 * 10 8 6 38 38 H 1.08995 * 109.46457 * 65.81956 * 12 11 8 39 39 H 1.09007 * 109.45033 * 305.84555 * 12 11 8 40 40 H 1.09003 * 109.50317 * 180.87472 * 13 12 11 41 41 H 1.09009 * 109.50186 * 60.76009 * 13 12 11 42 42 H 1.08992 * 109.52145 * 297.74953 * 14 13 12 43 43 H 0.97001 * 119.99505 * 179.97438 * 18 17 15 44 44 H 1.08997 * 109.50178 * 62.28426 * 23 14 13 45 45 H 1.08993 * 109.50117 * 182.40450 * 23 14 13 46 46 H 1.09000 * 109.46263 * 294.17497 * 24 11 8 47 47 H 1.08999 * 109.45834 * 54.14384 * 24 11 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 1.6524 -2.1327 1.1906 6 6 1.9964 -2.9682 2.1908 7 8 2.6264 -2.5513 3.1395 8 6 1.5972 -4.4201 2.1307 9 1 1.5733 -4.7477 1.0913 10 6 0.2100 -4.5938 2.7522 11 7 2.5724 -5.2273 2.8761 12 6 3.9392 -4.9677 2.4063 13 6 4.9092 -5.9267 3.1000 14 6 4.8233 -5.7243 4.6153 15 6 5.7322 -6.7073 5.3071 16 1 6.3139 -7.4069 4.7251 17 6 5.8220 -6.7130 6.6829 18 7 5.1140 -5.8608 7.3915 19 14 6.9491 -7.9311 7.5403 20 1 7.6308 -8.7739 6.5254 21 1 7.9648 -7.1925 8.3328 22 1 6.1482 -8.7949 8.4445 23 6 3.3798 -5.9532 5.0719 24 6 2.4541 -4.9934 4.3210 25 1 -0.3634 0.5139 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8933 -0.5138 -0.8899 29 1 3.1300 1.4425 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6766 1.9564 0.8900 32 1 1.6053 -0.2616 2.1370 33 1 3.1263 -0.6443 1.2952 34 1 1.1488 -2.4664 0.4317 35 1 -0.0789 -5.6439 2.7084 36 1 0.2339 -4.2663 3.7915 37 1 -0.5135 -3.9949 2.1991 38 1 4.2148 -3.9396 2.6410 39 1 3.9873 -5.1194 1.3279 40 1 5.9256 -5.7234 2.7627 41 1 4.6425 -6.9548 2.8545 42 1 5.1274 -4.7078 4.8648 43 1 5.1769 -5.8651 8.3595 44 1 3.0891 -6.9816 4.8574 45 1 3.3036 -5.7688 6.1434 46 1 2.7367 -3.9651 4.5468 47 1 1.4238 -5.1636 4.6333 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397215472.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:13 Heat of formation + Delta-G solvation = -52.091843 kcal Electronic energy + Delta-G solvation = -23481.963227 eV Core-core repulsion = 20277.870240 eV Total energy + Delta-G solvation = -3204.092987 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.29262 -37.85649 -36.50360 -34.23359 -33.33573 -31.93543 -29.74738 -29.26794 -27.53743 -26.61586 -25.50770 -23.39592 -21.86019 -21.38881 -20.77246 -19.67494 -18.59868 -16.85869 -16.47534 -16.19243 -15.60022 -15.15015 -14.64800 -14.32168 -14.28716 -14.04355 -13.62958 -13.29663 -13.10273 -12.71486 -12.62299 -12.46558 -12.38874 -12.06569 -11.98766 -11.82374 -11.44899 -11.28710 -11.18880 -11.04646 -10.87919 -10.84816 -10.62821 -10.33557 -10.13256 -9.86630 -9.79010 -9.29053 -9.02598 -8.82550 -8.53573 -8.17535 -7.51170 -5.85483 -3.90792 2.79863 3.23299 3.37051 3.44642 3.48946 4.40162 4.43797 4.54238 4.54636 4.68944 4.93349 5.14753 5.21066 5.27462 5.28315 5.37997 5.44130 5.47680 5.56388 5.60976 5.64378 5.77584 5.83546 5.90689 5.93235 5.98078 6.10705 6.19267 6.28036 6.39716 6.49204 6.62793 6.76117 6.86318 7.05769 7.18893 7.29433 7.45254 7.60327 7.72423 7.78086 7.94282 8.20842 8.30221 8.40180 8.61252 9.13467 9.72716 11.20514 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.030426 B = 0.003578 C = 0.003447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 920.033493 B = 7823.727157 C = 8120.135536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.108 4.108 3 C -0.145 4.145 4 C 0.121 3.879 5 N -0.736 5.736 6 C 0.482 3.518 7 O -0.522 6.522 8 C 0.064 3.936 9 H 0.093 0.907 10 C -0.142 4.142 11 N -0.505 5.505 12 C 0.049 3.951 13 C -0.103 4.103 14 C 0.049 3.951 15 C -0.508 4.508 16 H 0.053 0.947 17 C 0.059 3.941 18 N -0.890 5.890 19 Si 0.888 3.112 20 H -0.274 1.274 21 H -0.286 1.286 22 H -0.285 1.285 23 C -0.101 4.101 24 C 0.036 3.964 25 H 0.057 0.943 26 H 0.056 0.944 27 H 0.055 0.945 28 H 0.075 0.925 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.058 0.942 32 H 0.065 0.935 33 H 0.065 0.935 34 H 0.396 0.604 35 H 0.076 0.924 36 H 0.068 0.932 37 H 0.056 0.944 38 H 0.042 0.958 39 H 0.050 0.950 40 H 0.048 0.952 41 H 0.054 0.946 42 H 0.022 0.978 43 H 0.257 0.743 44 H 0.038 0.962 45 H 0.091 0.909 46 H 0.060 0.940 47 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.803 10.260 -16.176 22.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.127 4.127 3 C -0.203 4.203 4 C -0.003 4.003 5 N -0.390 5.390 6 C 0.267 3.733 7 O -0.397 6.397 8 C -0.049 4.049 9 H 0.111 0.889 10 C -0.199 4.199 11 N -0.229 5.229 12 C -0.079 4.079 13 C -0.141 4.141 14 C 0.030 3.970 15 C -0.547 4.547 16 H 0.072 0.928 17 C -0.141 4.141 18 N -0.529 5.529 19 Si 0.716 3.284 20 H -0.199 1.199 21 H -0.212 1.212 22 H -0.211 1.211 23 C -0.140 4.140 24 C -0.090 4.090 25 H 0.076 0.924 26 H 0.075 0.925 27 H 0.074 0.926 28 H 0.094 0.906 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.230 0.770 35 H 0.095 0.905 36 H 0.087 0.913 37 H 0.075 0.925 38 H 0.060 0.940 39 H 0.068 0.932 40 H 0.066 0.934 41 H 0.073 0.927 42 H 0.040 0.960 43 H 0.067 0.933 44 H 0.057 0.943 45 H 0.109 0.891 46 H 0.078 0.922 47 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -11.454 10.103 -15.347 21.651 hybrid contribution 0.553 0.130 0.212 0.606 sum -10.900 10.233 -15.135 21.274 Atomic orbital electron populations 1.21865 0.94743 1.01907 1.02029 1.21349 0.96402 0.96940 0.97978 1.21765 1.01375 0.95034 1.02144 1.21386 1.00060 0.81099 0.97738 1.46327 1.58657 1.09615 1.24381 1.22450 0.79217 0.89567 0.82026 1.90717 1.38722 1.77645 1.32629 1.21953 0.95470 0.87009 1.00470 0.88914 1.21845 0.93210 1.03181 1.01708 1.62572 1.04157 1.50253 1.05919 1.22269 0.88505 0.99588 0.97537 1.21636 0.95685 0.97747 0.98988 1.18667 0.92805 0.96881 0.88647 1.21264 1.24243 1.17825 0.91346 0.92830 1.24977 0.95812 0.95697 0.97627 1.69912 1.40862 1.36388 1.05775 0.86602 0.80781 0.81365 0.79607 1.19897 1.21224 1.21147 1.21630 0.95242 0.95981 1.01105 1.22639 0.99647 1.01332 0.85430 0.92403 0.92501 0.92589 0.90640 0.92289 0.92258 0.92316 0.91694 0.91697 0.77001 0.90530 0.91295 0.92484 0.93962 0.93153 0.93375 0.92711 0.95988 0.93269 0.94322 0.89094 0.92188 0.92668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.95 9.07 37.15 0.34 -0.61 16 2 C -0.11 -0.78 2.96 -90.63 -0.27 -1.05 16 3 C -0.15 -0.98 9.19 37.16 0.34 -0.63 16 4 C 0.12 1.28 5.06 -4.04 -0.02 1.26 16 5 N -0.74 -8.09 5.28 -60.30 -0.32 -8.41 16 6 C 0.48 7.33 6.02 -10.98 -0.07 7.27 16 7 O -0.52 -10.49 12.45 5.56 0.07 -10.42 16 8 C 0.06 0.92 2.95 -68.87 -0.20 0.71 16 9 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 10 C -0.14 -1.74 8.57 37.16 0.32 -1.42 16 11 N -0.51 -9.43 4.73 -228.08 -1.08 -10.50 16 12 C 0.05 0.96 4.89 -3.84 -0.02 0.94 16 13 C -0.10 -2.32 5.32 -26.65 -0.14 -2.46 16 14 C 0.05 1.29 2.16 -91.65 -0.20 1.09 16 15 C -0.51 -14.63 8.56 -34.44 -0.29 -14.92 16 16 H 0.05 1.52 7.74 -52.48 -0.41 1.12 16 17 C 0.06 1.71 5.31 -17.82 -0.09 1.62 16 18 N -0.89 -26.52 11.37 55.43 0.63 -25.89 16 19 Si 0.89 22.04 29.54 -169.99 -5.02 17.02 16 20 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 21 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 22 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 23 C -0.10 -2.55 5.12 -26.65 -0.14 -2.69 16 24 C 0.04 0.77 4.62 -3.83 -0.02 0.76 16 25 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 27 H 0.06 0.34 7.18 -51.93 -0.37 -0.03 16 28 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 31 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.40 3.15 7.66 -40.82 -0.31 2.84 16 35 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.07 0.98 6.19 -51.93 -0.32 0.66 16 37 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.04 0.92 6.09 -51.93 -0.32 0.60 16 39 H 0.05 0.86 8.12 -51.93 -0.42 0.44 16 40 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 41 H 0.05 1.23 8.14 -51.92 -0.42 0.81 16 42 H 0.02 0.66 8.14 -51.93 -0.42 0.23 16 43 H 0.26 7.29 8.31 -40.82 -0.34 6.96 16 44 H 0.04 0.98 8.14 -51.93 -0.42 0.55 16 45 H 0.09 2.54 6.17 -51.93 -0.32 2.22 16 46 H 0.06 1.44 5.67 -51.93 -0.29 1.14 16 47 H 0.05 1.08 5.82 -51.93 -0.30 0.77 16 LS Contribution 355.58 15.07 5.36 5.36 Total: -1.00 -32.46 355.58 -9.37 -41.82 By element: Atomic # 1 Polarization: 9.71 SS G_CDS: -8.54 Total: 1.17 kcal Atomic # 6 Polarization: -9.68 SS G_CDS: -0.46 Total: -10.15 kcal Atomic # 7 Polarization: -44.03 SS G_CDS: -0.77 Total: -44.80 kcal Atomic # 8 Polarization: -10.49 SS G_CDS: 0.07 Total: -10.42 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -32.46 -9.37 -41.82 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397215472.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.268 kcal (2) G-P(sol) polarization free energy of solvation -32.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.824 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds