Wall clock time and date at job start Tue Mar 31 2020 05:30:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.47291 * 2 1 4 4 C 1.52995 * 109.47249 * 119.99625 * 2 1 3 5 5 H 1.08995 * 109.47536 * 185.00099 * 4 2 1 6 6 C 1.53000 * 109.47680 * 305.00253 * 4 2 1 7 7 N 1.46506 * 109.47011 * 65.00021 * 4 2 1 8 8 C 1.34773 * 119.99968 * 154.99680 * 7 4 2 9 9 O 1.21283 * 120.00360 * 359.73034 * 8 7 4 10 10 C 1.50706 * 120.00081 * 180.02562 * 8 7 4 11 11 N 1.46895 * 109.47182 * 179.72734 * 10 8 7 12 12 C 1.46845 * 111.00008 * 294.20837 * 11 10 8 13 13 C 1.53043 * 109.52532 * 174.16172 * 12 11 10 14 14 C 1.53125 * 109.27406 * 59.17768 * 13 12 11 15 15 C 1.50700 * 109.57017 * 182.40840 * 14 13 12 16 16 H 1.08012 * 119.99626 * 119.72030 * 15 14 13 17 17 C 1.37868 * 120.00373 * 299.71357 * 15 14 13 18 18 N 1.31511 * 120.00100 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00238 * 180.02562 * 17 15 14 20 20 H 1.48504 * 109.47238 * 0.02562 * 19 17 15 21 21 H 1.48497 * 109.47429 * 120.00434 * 19 17 15 22 22 H 1.48500 * 109.47295 * 240.00671 * 19 17 15 23 23 C 1.53117 * 109.16422 * 302.34705 * 14 13 12 24 24 C 1.46846 * 110.99740 * 170.00152 * 11 10 8 25 25 H 1.08996 * 109.46806 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.46982 * 299.99919 * 1 2 3 27 27 H 1.08992 * 109.47156 * 59.99882 * 1 2 3 28 28 H 1.08997 * 109.47657 * 240.00245 * 2 1 3 29 29 H 1.08994 * 109.47744 * 179.97438 * 3 2 1 30 30 H 1.09001 * 109.46945 * 300.00361 * 3 2 1 31 31 H 1.09000 * 109.47052 * 59.99564 * 3 2 1 32 32 H 1.09001 * 109.47185 * 59.99504 * 6 4 2 33 33 H 1.08996 * 109.47804 * 179.97438 * 6 4 2 34 34 H 1.09002 * 109.46963 * 299.99945 * 6 4 2 35 35 H 0.96998 * 119.99507 * 335.00535 * 7 4 2 36 36 H 1.09001 * 109.46564 * 299.73030 * 10 8 7 37 37 H 1.08998 * 109.47012 * 59.72084 * 10 8 7 38 38 H 1.08995 * 109.46328 * 294.17818 * 12 11 10 39 39 H 1.09000 * 109.46501 * 54.14569 * 12 11 10 40 40 H 1.09001 * 109.50123 * 299.24169 * 13 12 11 41 41 H 1.08998 * 109.50462 * 179.11725 * 13 12 11 42 42 H 1.09000 * 109.52105 * 62.25559 * 14 13 12 43 43 H 0.97005 * 120.00394 * 179.97438 * 18 17 15 44 44 H 1.08996 * 109.50405 * 297.71532 * 23 14 13 45 45 H 1.08996 * 109.50721 * 177.59700 * 23 14 13 46 46 H 1.09005 * 109.46391 * 305.84951 * 24 11 10 47 47 H 1.08991 * 109.46661 * 65.83346 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7211 1.2492 5 1 3.1263 -0.6442 1.2952 6 6 1.4300 -0.0762 2.4954 7 7 1.6524 -2.1328 1.1906 8 6 2.3686 -3.0566 1.8614 9 8 3.3369 -2.7201 2.5096 10 6 1.9703 -4.5088 1.8007 11 7 2.9059 -5.3072 2.6038 12 6 4.2530 -5.2843 2.0198 13 6 5.2286 -6.0016 2.9557 14 6 4.7643 -7.4467 3.1586 15 6 5.6872 -8.1423 4.1258 16 1 5.2981 -8.5422 5.0507 17 6 7.0279 -8.2683 3.8302 18 7 7.5016 -7.7811 2.7043 19 14 8.1716 -9.1312 5.0289 20 1 7.3973 -9.5860 6.2117 21 1 8.7925 -10.3044 4.3633 22 1 9.2340 -8.1895 5.4645 23 6 3.3407 -7.4428 3.7222 24 6 2.4200 -6.6836 2.7640 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 1.8934 -0.5138 -0.8899 29 1 3.1300 1.4426 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6767 1.9564 0.8899 32 1 0.3437 -0.1531 2.4495 33 1 1.7930 -0.5902 3.3853 34 1 1.7183 0.9741 2.5390 35 1 0.8804 -2.4024 0.6689 36 1 0.9611 -4.6255 2.1957 37 1 1.9970 -4.8499 0.7658 38 1 4.2388 -5.7891 1.0539 39 1 4.5728 -4.2511 1.8846 40 1 5.2537 -5.4891 3.9174 41 1 6.2253 -5.9982 2.5146 42 1 4.7763 -7.9706 2.2028 43 1 8.4450 -7.8694 2.4964 44 1 3.3361 -6.9530 4.6959 45 1 2.9887 -8.4688 3.8288 46 1 1.4083 -6.6668 3.1696 47 1 2.4145 -7.1820 1.7948 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397217936.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:31 Heat of formation + Delta-G solvation = -51.978943 kcal Electronic energy + Delta-G solvation = -23047.476368 eV Core-core repulsion = 19843.388276 eV Total energy + Delta-G solvation = -3204.088091 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.99543 -38.14965 -36.96740 -33.75951 -33.29446 -31.37045 -29.71003 -29.60178 -27.63761 -27.30063 -25.01435 -23.87879 -22.00447 -21.48933 -20.20748 -19.62627 -18.51512 -16.93685 -16.39408 -16.20910 -15.49256 -15.12243 -14.89132 -14.43569 -14.32218 -13.83601 -13.78055 -13.33035 -13.21403 -12.79621 -12.62812 -12.39458 -12.31343 -12.27967 -12.14026 -11.68626 -11.51160 -11.42919 -11.21247 -10.91910 -10.89422 -10.77821 -10.66994 -10.44145 -10.11924 -9.88288 -9.56139 -9.28060 -9.03906 -8.87800 -8.52419 -8.19996 -7.68301 -5.88631 -3.93589 2.87186 3.13668 3.36285 3.44067 3.48318 4.41865 4.50989 4.54121 4.54697 4.71210 4.94938 5.13331 5.17335 5.25852 5.33553 5.40235 5.41457 5.45522 5.50245 5.56968 5.60292 5.73190 5.77472 5.81043 5.87133 5.94037 6.00848 6.18396 6.22263 6.30295 6.40479 6.55018 6.72272 6.83090 6.94518 7.15077 7.26476 7.46115 7.60559 7.71034 7.79044 7.92813 8.16453 8.27367 8.46212 8.58232 9.10183 9.70290 11.17605 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.032988 B = 0.003209 C = 0.003064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 848.580952 B = 8723.738085 C = 9137.149496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.104 4.104 3 C -0.147 4.147 4 C 0.147 3.853 5 H 0.087 0.913 6 C -0.166 4.166 7 N -0.736 5.736 8 C 0.513 3.487 9 O -0.509 6.509 10 C 0.035 3.965 11 N -0.518 5.518 12 C 0.054 3.946 13 C -0.100 4.100 14 C 0.046 3.954 15 C -0.508 4.508 16 H 0.054 0.946 17 C 0.059 3.941 18 N -0.892 5.892 19 Si 0.889 3.111 20 H -0.274 1.274 21 H -0.286 1.286 22 H -0.285 1.285 23 C -0.106 4.106 24 C 0.061 3.939 25 H 0.053 0.947 26 H 0.062 0.938 27 H 0.056 0.944 28 H 0.075 0.925 29 H 0.058 0.942 30 H 0.057 0.943 31 H 0.060 0.940 32 H 0.058 0.942 33 H 0.061 0.939 34 H 0.064 0.936 35 H 0.395 0.605 36 H 0.095 0.905 37 H 0.054 0.946 38 H 0.015 0.985 39 H 0.074 0.926 40 H 0.044 0.956 41 H 0.091 0.909 42 H 0.019 0.981 43 H 0.258 0.742 44 H 0.057 0.943 45 H 0.050 0.950 46 H 0.057 0.943 47 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.991 15.241 -7.485 23.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.123 4.123 3 C -0.204 4.204 4 C 0.042 3.958 5 H 0.105 0.895 6 C -0.224 4.224 7 N -0.391 5.391 8 C 0.298 3.702 9 O -0.383 6.383 10 C -0.096 4.096 11 N -0.243 5.243 12 C -0.073 4.073 13 C -0.138 4.138 14 C 0.028 3.972 15 C -0.546 4.546 16 H 0.073 0.927 17 C -0.141 4.141 18 N -0.531 5.531 19 Si 0.717 3.283 20 H -0.199 1.199 21 H -0.212 1.212 22 H -0.211 1.211 23 C -0.143 4.143 24 C -0.066 4.066 25 H 0.072 0.928 26 H 0.081 0.919 27 H 0.075 0.925 28 H 0.093 0.907 29 H 0.077 0.923 30 H 0.076 0.924 31 H 0.079 0.921 32 H 0.077 0.923 33 H 0.080 0.920 34 H 0.083 0.917 35 H 0.229 0.771 36 H 0.113 0.887 37 H 0.072 0.928 38 H 0.033 0.967 39 H 0.092 0.908 40 H 0.063 0.937 41 H 0.109 0.891 42 H 0.037 0.963 43 H 0.068 0.932 44 H 0.076 0.924 45 H 0.069 0.931 46 H 0.076 0.924 47 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -15.054 15.689 -6.618 22.729 hybrid contribution 0.174 -0.938 -0.533 1.092 sum -14.881 14.752 -7.151 22.140 Atomic orbital electron populations 1.21932 0.95003 1.01702 1.02197 1.21379 0.96263 0.96851 0.97826 1.21843 1.01396 0.95114 1.02091 1.20905 1.00440 0.80068 0.94372 0.89523 1.22274 1.01011 1.00765 0.98384 1.46157 1.33004 1.07094 1.52807 1.20746 0.82887 0.87813 0.78711 1.90712 1.26362 1.81512 1.39681 1.21935 0.98559 0.91262 0.97887 1.61752 1.02192 1.11667 1.48719 1.22428 0.87955 1.00962 0.95962 1.21603 0.98650 0.96118 0.97448 1.18713 0.89617 0.92940 0.95944 1.21246 0.92969 1.35646 1.04766 0.92740 1.24971 0.98227 0.95672 0.95232 1.69896 1.13820 1.46145 1.23247 0.86585 0.80976 0.79309 0.81398 1.19858 1.21221 1.21098 1.21669 0.97308 0.97169 0.98189 1.22155 0.98135 0.87586 0.98749 0.92799 0.91914 0.92541 0.90659 0.92318 0.92401 0.92108 0.92293 0.91954 0.91734 0.77092 0.88698 0.92782 0.96714 0.90812 0.93723 0.89124 0.96260 0.93235 0.92392 0.93120 0.92442 0.95763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.89 8.58 37.16 0.32 -0.57 16 2 C -0.10 -0.76 2.85 -90.62 -0.26 -1.02 16 3 C -0.15 -0.97 8.95 37.16 0.33 -0.63 16 4 C 0.15 1.47 2.35 -67.93 -0.16 1.31 16 5 H 0.09 1.09 7.57 -51.93 -0.39 0.69 16 6 C -0.17 -1.59 8.75 37.16 0.33 -1.26 16 7 N -0.74 -7.79 5.01 -53.80 -0.27 -8.06 16 8 C 0.51 7.65 7.47 -10.98 -0.08 7.56 16 9 O -0.51 -9.98 13.99 5.56 0.08 -9.90 16 10 C 0.04 0.51 5.45 -4.98 -0.03 0.48 16 11 N -0.52 -9.85 4.40 -236.11 -1.04 -10.89 16 12 C 0.05 1.17 5.10 -3.83 -0.02 1.15 16 13 C -0.10 -2.55 5.13 -26.64 -0.14 -2.69 16 14 C 0.05 1.20 2.16 -91.65 -0.20 1.00 16 15 C -0.51 -14.45 8.56 -34.44 -0.29 -14.75 16 16 H 0.05 1.53 7.75 -52.48 -0.41 1.13 16 17 C 0.06 1.70 5.31 -17.82 -0.09 1.61 16 18 N -0.89 -26.28 11.37 55.43 0.63 -25.65 16 19 Si 0.89 21.97 29.54 -169.99 -5.02 16.95 16 20 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 21 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 22 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 23 C -0.11 -2.30 5.32 -26.65 -0.14 -2.44 16 24 C 0.06 1.12 5.46 -3.83 -0.02 1.10 16 25 H 0.05 0.29 6.77 -51.93 -0.35 -0.06 16 26 H 0.06 0.37 6.35 -51.93 -0.33 0.04 16 27 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 28 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 31 H 0.06 0.38 6.57 -51.93 -0.34 0.04 16 32 H 0.06 0.49 6.35 -51.93 -0.33 0.16 16 33 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.06 0.53 6.57 -51.93 -0.34 0.19 16 35 H 0.39 3.04 7.18 -40.82 -0.29 2.75 16 36 H 0.09 1.11 7.99 -51.93 -0.41 0.69 16 37 H 0.05 0.70 8.12 -51.93 -0.42 0.28 16 38 H 0.01 0.32 8.14 -51.93 -0.42 -0.11 16 39 H 0.07 1.64 5.78 -51.93 -0.30 1.34 16 40 H 0.04 1.20 8.14 -51.93 -0.42 0.77 16 41 H 0.09 2.55 6.17 -51.93 -0.32 2.23 16 42 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 44 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 45 H 0.05 1.05 8.14 -51.93 -0.42 0.62 16 46 H 0.06 0.89 8.02 -51.93 -0.42 0.48 16 47 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 LS Contribution 356.10 15.07 5.37 5.37 Total: -1.00 -32.25 356.10 -9.16 -41.41 By element: Atomic # 1 Polarization: 8.37 SS G_CDS: -8.44 Total: -0.07 kcal Atomic # 6 Polarization: -8.69 SS G_CDS: -0.46 Total: -9.15 kcal Atomic # 7 Polarization: -43.92 SS G_CDS: -0.68 Total: -44.60 kcal Atomic # 8 Polarization: -9.98 SS G_CDS: 0.08 Total: -9.90 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -32.25 -9.16 -41.41 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397217936.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.572 kcal (2) G-P(sol) polarization free energy of solvation -32.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.407 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds