Wall clock time and date at job start Tue Mar 31 2020 05:53:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08992 * 109.47242 * 2 1 4 4 C 1.50698 * 109.47369 * 120.00477 * 2 1 3 5 5 O 1.21278 * 120.00629 * 105.27569 * 4 2 1 6 6 N 1.34780 * 119.99778 * 285.27518 * 4 2 1 7 7 C 1.46498 * 120.00214 * 179.72418 * 6 4 2 8 8 C 1.53004 * 109.46885 * 59.99945 * 7 6 4 9 9 C 1.52995 * 109.47398 * 179.97438 * 7 6 4 10 10 C 1.53006 * 109.47224 * 300.00432 * 7 6 4 11 11 N 1.46904 * 109.46639 * 240.00188 * 2 1 3 12 12 C 1.46840 * 111.00055 * 76.44096 * 11 2 1 13 13 C 1.53034 * 109.52535 * 174.15940 * 12 11 2 14 14 C 1.53113 * 109.27906 * 59.17757 * 13 12 11 15 15 C 1.50700 * 109.52575 * 182.44302 * 14 13 12 16 16 H 1.08002 * 120.00117 * 119.67852 * 15 14 13 17 17 C 1.37879 * 119.99925 * 299.68654 * 15 14 13 18 18 N 1.31517 * 120.00086 * 179.97438 * 17 15 14 19 19 Si 1.86795 * 119.99868 * 359.97438 * 17 15 14 20 20 H 1.48498 * 109.47279 * 90.00648 * 19 17 15 21 21 H 1.48509 * 109.47229 * 210.00135 * 19 17 15 22 22 H 1.48493 * 109.47410 * 330.00302 * 19 17 15 23 23 C 1.53119 * 109.16128 * 302.34431 * 14 13 12 24 24 C 1.46843 * 110.99905 * 312.22728 * 11 2 1 25 25 H 1.09008 * 109.46801 * 299.99595 * 1 2 3 26 26 H 1.08997 * 109.47361 * 59.99512 * 1 2 3 27 27 H 1.09002 * 109.47015 * 180.02562 * 1 2 3 28 28 H 0.97003 * 120.00071 * 0.02562 * 6 4 2 29 29 H 1.09000 * 109.47369 * 59.99920 * 8 7 6 30 30 H 1.09000 * 109.47295 * 180.02562 * 8 7 6 31 31 H 1.09000 * 109.47181 * 300.00074 * 8 7 6 32 32 H 1.08997 * 109.47215 * 60.00420 * 9 7 6 33 33 H 1.09002 * 109.47299 * 180.02562 * 9 7 6 34 34 H 1.09004 * 109.47376 * 300.00134 * 9 7 6 35 35 H 1.09000 * 109.46855 * 59.99642 * 10 7 6 36 36 H 1.08998 * 109.46726 * 179.97438 * 10 7 6 37 37 H 1.09000 * 109.46290 * 299.99735 * 10 7 6 38 38 H 1.09003 * 109.46692 * 294.17625 * 12 11 2 39 39 H 1.09002 * 109.46629 * 54.14226 * 12 11 2 40 40 H 1.09007 * 109.50092 * 299.23682 * 13 12 11 41 41 H 1.09001 * 109.50866 * 179.12246 * 13 12 11 42 42 H 1.08998 * 109.52549 * 62.25046 * 14 13 12 43 43 H 0.96994 * 119.99850 * 179.97438 * 18 17 15 44 44 H 1.08993 * 109.50495 * 297.71779 * 23 14 13 45 45 H 1.09004 * 109.50587 * 177.59264 * 23 14 13 46 46 H 1.08996 * 109.46794 * 305.85421 * 24 11 2 47 47 H 1.09003 * 109.46439 * 65.82994 * 24 11 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 1.2304 5 8 2.4955 -1.8277 1.1390 6 7 1.9671 -0.1043 2.4324 7 6 2.4499 -0.7973 3.6294 8 6 3.9342 -1.1290 3.4628 9 6 2.2634 0.1047 4.8510 10 6 1.6570 -2.0913 3.8244 11 7 2.0196 -0.6925 -1.1995 12 6 1.8919 0.1600 -2.3883 13 6 2.5421 -0.5337 -3.5874 14 6 1.8543 -1.8807 -3.8262 15 6 2.5294 -2.5955 -4.9683 16 1 2.9881 -3.5597 -4.8062 17 6 2.5615 -2.0184 -6.2201 18 7 3.1511 -2.6420 -7.2167 19 14 1.7677 -0.3509 -6.5004 20 1 2.7660 0.7204 -6.2536 21 1 1.2831 -0.2626 -7.9014 22 1 0.6230 -0.1848 -5.5693 23 6 1.9596 -2.7307 -2.5569 24 6 1.3263 -1.9732 -1.3876 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 1.5964 0.7891 2.5056 29 1 4.4992 -0.2073 3.3239 30 1 4.2934 -1.6450 4.3532 31 1 4.0675 -1.7715 2.5924 32 1 1.2061 0.3414 4.9699 33 1 2.6231 -0.4107 5.7416 34 1 2.8287 1.0263 4.7119 35 1 1.7903 -2.7337 2.9539 36 1 2.0166 -2.6070 4.7147 37 1 0.5996 -1.8549 3.9430 38 1 0.8367 0.3350 -2.5982 39 1 2.3888 1.1131 -2.2068 40 1 3.6005 -0.6965 -3.3838 41 1 2.4335 0.0923 -4.4731 42 1 0.8044 -1.7159 -4.0681 43 1 3.1734 -2.2361 -8.0974 44 1 3.0088 -2.9280 -2.3371 45 1 1.4347 -3.6743 -2.7062 46 1 1.4123 -2.5697 -0.4793 47 1 0.2737 -1.7883 -1.6022 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397238865.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:18 Heat of formation + Delta-G solvation = -37.418603 kcal Electronic energy + Delta-G solvation = -23861.201912 eV Core-core repulsion = 20657.745205 eV Total energy + Delta-G solvation = -3203.456707 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.44132 -38.50984 -36.40843 -34.49260 -32.47652 -31.59365 -30.17081 -29.30635 -27.62455 -27.37096 -25.92024 -24.21023 -22.61033 -21.57342 -20.31052 -19.59771 -18.52780 -17.07155 -16.58339 -16.23421 -15.40040 -15.13973 -14.50360 -14.48352 -14.13497 -14.10260 -13.66653 -13.54242 -13.18835 -12.74900 -12.65966 -12.58824 -12.29523 -12.24151 -12.17459 -11.95512 -11.83008 -11.61811 -11.61157 -11.26296 -11.21837 -11.13209 -10.81249 -10.34180 -10.01237 -9.84295 -9.54942 -9.46640 -9.11337 -8.88899 -8.76900 -8.44955 -7.83991 -5.99187 -3.96706 2.75954 3.01894 3.30594 3.40026 3.43001 4.28161 4.47208 4.49207 4.69709 4.79554 4.87162 5.00261 5.06253 5.27014 5.31432 5.39595 5.47147 5.52865 5.57325 5.60296 5.62238 5.64273 5.77405 5.80922 5.82013 5.83150 6.02124 6.06350 6.18521 6.23245 6.26488 6.32201 6.48312 6.53471 6.61686 6.83476 6.95938 7.01070 7.34648 7.37464 7.57078 7.62557 7.74908 7.87668 8.36956 8.63575 9.06646 9.63999 11.14613 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.035494 B = 0.003957 C = 0.003804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 788.686897 B = 7074.323947 C = 7358.724672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.062 3.938 3 H 0.097 0.903 4 C 0.525 3.475 5 O -0.510 6.510 6 N -0.731 5.731 7 C 0.170 3.830 8 C -0.164 4.164 9 C -0.154 4.154 10 C -0.164 4.164 11 N -0.511 5.511 12 C 0.056 3.944 13 C -0.115 4.115 14 C 0.013 3.987 15 C -0.507 4.507 16 H 0.073 0.927 17 C 0.066 3.934 18 N -0.905 5.905 19 Si 0.888 3.112 20 H -0.279 1.279 21 H -0.299 1.299 22 H -0.268 1.268 23 C -0.093 4.093 24 C 0.052 3.948 25 H 0.059 0.941 26 H 0.068 0.932 27 H 0.068 0.932 28 H 0.395 0.605 29 H 0.052 0.948 30 H 0.059 0.941 31 H 0.082 0.918 32 H 0.060 0.940 33 H 0.071 0.929 34 H 0.061 0.939 35 H 0.080 0.920 36 H 0.060 0.940 37 H 0.051 0.949 38 H 0.027 0.973 39 H 0.061 0.939 40 H 0.069 0.931 41 H 0.048 0.952 42 H 0.020 0.980 43 H 0.262 0.738 44 H 0.063 0.937 45 H 0.055 0.945 46 H 0.083 0.917 47 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.121 9.162 23.608 25.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.051 4.051 3 H 0.115 0.885 4 C 0.311 3.689 5 O -0.383 6.383 6 N -0.385 5.385 7 C 0.085 3.915 8 C -0.222 4.222 9 C -0.212 4.212 10 C -0.222 4.222 11 N -0.235 5.235 12 C -0.072 4.072 13 C -0.153 4.153 14 C -0.006 4.006 15 C -0.545 4.545 16 H 0.091 0.909 17 C -0.134 4.134 18 N -0.543 5.543 19 Si 0.718 3.282 20 H -0.206 1.206 21 H -0.227 1.227 22 H -0.193 1.193 23 C -0.131 4.131 24 C -0.075 4.075 25 H 0.078 0.922 26 H 0.087 0.913 27 H 0.087 0.913 28 H 0.229 0.771 29 H 0.072 0.928 30 H 0.078 0.922 31 H 0.101 0.899 32 H 0.079 0.921 33 H 0.090 0.910 34 H 0.080 0.920 35 H 0.099 0.901 36 H 0.079 0.921 37 H 0.070 0.930 38 H 0.045 0.955 39 H 0.079 0.921 40 H 0.088 0.912 41 H 0.066 0.934 42 H 0.038 0.962 43 H 0.072 0.928 44 H 0.082 0.918 45 H 0.074 0.926 46 H 0.102 0.898 47 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -4.218 8.219 23.403 25.161 hybrid contribution -1.392 1.737 -0.377 2.258 sum -5.610 9.956 23.026 25.706 Atomic orbital electron populations 1.22379 0.95531 1.03386 1.02589 1.21626 0.94048 0.98477 0.90940 0.88544 1.20536 0.77944 0.86607 0.83842 1.90615 1.43285 1.18985 1.85435 1.46198 1.65536 1.19945 1.06840 1.20278 0.94505 0.92542 0.84220 1.22230 0.94138 1.02337 1.03532 1.22082 1.02167 0.99724 0.97199 1.22227 0.99241 0.97466 1.03243 1.61838 1.56487 1.04214 1.00954 1.22237 0.98566 0.95472 0.90890 1.22004 1.01294 0.98329 0.93626 1.19194 0.95681 0.91737 0.94006 1.21098 1.35516 1.05848 0.92008 0.90872 1.25039 0.94913 0.97373 0.96098 1.69909 1.44308 1.38785 1.01341 0.86839 0.80162 0.84985 0.76174 1.20615 1.22681 1.19278 1.21459 1.00773 0.97532 0.93369 1.22382 0.94469 0.90042 1.00629 0.92151 0.91344 0.91296 0.77106 0.92842 0.92210 0.89918 0.92120 0.91005 0.92034 0.90128 0.92126 0.92958 0.95501 0.92075 0.91213 0.93422 0.96182 0.92830 0.91798 0.92601 0.89849 0.95845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.00 8.30 37.16 0.31 -1.69 16 2 C 0.06 0.80 2.70 -68.86 -0.19 0.61 16 3 H 0.10 1.06 7.86 -51.93 -0.41 0.66 16 4 C 0.52 6.90 6.39 -10.99 -0.07 6.83 16 5 O -0.51 -8.54 10.52 5.56 0.06 -8.48 16 6 N -0.73 -6.94 5.11 -47.61 -0.24 -7.18 16 7 C 0.17 1.54 1.06 -131.82 -0.14 1.40 16 8 C -0.16 -1.70 8.40 37.16 0.31 -1.39 16 9 C -0.15 -0.94 8.59 37.16 0.32 -0.63 16 10 C -0.16 -1.61 8.40 37.16 0.31 -1.30 16 11 N -0.51 -8.76 4.35 -228.08 -0.99 -9.75 16 12 C 0.06 0.99 5.22 -3.84 -0.02 0.97 16 13 C -0.11 -2.54 4.84 -26.66 -0.13 -2.67 16 14 C 0.01 0.31 1.75 -91.65 -0.16 0.15 16 15 C -0.51 -14.65 9.14 -34.44 -0.31 -14.97 16 16 H 0.07 2.30 7.99 -52.49 -0.42 1.88 16 17 C 0.07 1.96 5.45 -17.82 -0.10 1.86 16 18 N -0.90 -28.35 13.96 55.43 0.77 -27.58 16 19 Si 0.89 22.35 24.37 -169.99 -4.14 18.20 16 20 H -0.28 -6.81 6.89 56.52 0.39 -6.42 16 21 H -0.30 -7.55 7.11 56.52 0.40 -7.15 16 22 H -0.27 -6.43 6.53 56.52 0.37 -6.06 16 23 C -0.09 -2.02 5.32 -26.65 -0.14 -2.16 16 24 C 0.05 0.95 4.17 -3.83 -0.02 0.93 16 25 H 0.06 0.50 8.14 -51.92 -0.42 0.08 16 26 H 0.07 0.78 7.09 -51.93 -0.37 0.41 16 27 H 0.07 0.85 6.45 -51.93 -0.33 0.52 16 28 H 0.40 2.67 8.47 -40.82 -0.35 2.33 16 29 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.08 1.13 6.16 -51.93 -0.32 0.81 16 32 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 33 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 35 H 0.08 1.04 6.18 -51.93 -0.32 0.72 16 36 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 37 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 38 H 0.03 0.47 7.13 -51.93 -0.37 0.10 16 39 H 0.06 0.96 7.95 -51.93 -0.41 0.54 16 40 H 0.07 1.61 8.14 -51.93 -0.42 1.19 16 41 H 0.05 1.10 3.38 -51.93 -0.18 0.92 16 42 H 0.02 0.50 7.19 -51.93 -0.37 0.13 16 43 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 44 H 0.06 1.46 8.14 -51.93 -0.42 1.04 16 45 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 46 H 0.08 1.53 5.90 -51.93 -0.31 1.23 16 47 H 0.02 0.41 6.59 -51.93 -0.34 0.07 16 LS Contribution 344.75 15.07 5.20 5.20 Total: -1.00 -32.68 344.75 -7.70 -40.38 By element: Atomic # 1 Polarization: 9.57 SS G_CDS: -8.33 Total: 1.25 kcal Atomic # 6 Polarization: -12.02 SS G_CDS: -0.02 Total: -12.04 kcal Atomic # 7 Polarization: -44.05 SS G_CDS: -0.46 Total: -44.51 kcal Atomic # 8 Polarization: -8.54 SS G_CDS: 0.06 Total: -8.48 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -4.14 Total: 18.20 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -32.68 -7.70 -40.38 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397238865.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.966 kcal (2) G-P(sol) polarization free energy of solvation -32.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.384 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds