Wall clock time and date at job start Tue Mar 31 2020 05:53:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08992 * 109.47242 * 2 1 4 4 C 1.50698 * 109.47369 * 120.00477 * 2 1 3 5 5 O 1.21278 * 120.00629 * 105.27569 * 4 2 1 6 6 N 1.34780 * 119.99778 * 285.27518 * 4 2 1 7 7 C 1.46498 * 120.00214 * 179.72418 * 6 4 2 8 8 C 1.53004 * 109.46885 * 59.99945 * 7 6 4 9 9 C 1.52995 * 109.47398 * 179.97438 * 7 6 4 10 10 C 1.53006 * 109.47224 * 300.00432 * 7 6 4 11 11 N 1.46904 * 109.46639 * 240.00188 * 2 1 3 12 12 C 1.46840 * 111.00055 * 76.44096 * 11 2 1 13 13 C 1.53034 * 109.52535 * 174.15940 * 12 11 2 14 14 C 1.53113 * 109.27906 * 59.17757 * 13 12 11 15 15 C 1.50700 * 109.52575 * 182.44302 * 14 13 12 16 16 H 1.08002 * 120.00117 * 119.67852 * 15 14 13 17 17 C 1.37879 * 119.99925 * 299.68654 * 15 14 13 18 18 N 1.31517 * 120.00086 * 179.97438 * 17 15 14 19 19 Si 1.86795 * 119.99868 * 359.97438 * 17 15 14 20 20 H 1.48498 * 109.47279 * 90.00648 * 19 17 15 21 21 H 1.48509 * 109.47229 * 210.00135 * 19 17 15 22 22 H 1.48493 * 109.47410 * 330.00302 * 19 17 15 23 23 C 1.53119 * 109.16128 * 302.34431 * 14 13 12 24 24 C 1.46843 * 110.99905 * 312.22728 * 11 2 1 25 25 H 1.09008 * 109.46801 * 299.99595 * 1 2 3 26 26 H 1.08997 * 109.47361 * 59.99512 * 1 2 3 27 27 H 1.09002 * 109.47015 * 180.02562 * 1 2 3 28 28 H 0.97003 * 120.00071 * 0.02562 * 6 4 2 29 29 H 1.09000 * 109.47369 * 59.99920 * 8 7 6 30 30 H 1.09000 * 109.47295 * 180.02562 * 8 7 6 31 31 H 1.09000 * 109.47181 * 300.00074 * 8 7 6 32 32 H 1.08997 * 109.47215 * 60.00420 * 9 7 6 33 33 H 1.09002 * 109.47299 * 180.02562 * 9 7 6 34 34 H 1.09004 * 109.47376 * 300.00134 * 9 7 6 35 35 H 1.09000 * 109.46855 * 59.99642 * 10 7 6 36 36 H 1.08998 * 109.46726 * 179.97438 * 10 7 6 37 37 H 1.09000 * 109.46290 * 299.99735 * 10 7 6 38 38 H 1.09003 * 109.46692 * 294.17625 * 12 11 2 39 39 H 1.09002 * 109.46629 * 54.14226 * 12 11 2 40 40 H 1.09007 * 109.50092 * 299.23682 * 13 12 11 41 41 H 1.09001 * 109.50866 * 179.12246 * 13 12 11 42 42 H 1.08998 * 109.52549 * 62.25046 * 14 13 12 43 43 H 0.96994 * 119.99850 * 179.97438 * 18 17 15 44 44 H 1.08993 * 109.50495 * 297.71779 * 23 14 13 45 45 H 1.09004 * 109.50587 * 177.59264 * 23 14 13 46 46 H 1.08996 * 109.46794 * 305.85421 * 24 11 2 47 47 H 1.09003 * 109.46439 * 65.82994 * 24 11 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 1.2304 5 8 2.4955 -1.8277 1.1390 6 7 1.9671 -0.1043 2.4324 7 6 2.4499 -0.7973 3.6294 8 6 3.9342 -1.1290 3.4628 9 6 2.2634 0.1047 4.8510 10 6 1.6570 -2.0913 3.8244 11 7 2.0196 -0.6925 -1.1995 12 6 1.8919 0.1600 -2.3883 13 6 2.5421 -0.5337 -3.5874 14 6 1.8543 -1.8807 -3.8262 15 6 2.5294 -2.5955 -4.9683 16 1 2.9881 -3.5597 -4.8062 17 6 2.5615 -2.0184 -6.2201 18 7 3.1511 -2.6420 -7.2167 19 14 1.7677 -0.3509 -6.5004 20 1 2.7660 0.7204 -6.2536 21 1 1.2831 -0.2626 -7.9014 22 1 0.6230 -0.1848 -5.5693 23 6 1.9596 -2.7307 -2.5569 24 6 1.3263 -1.9732 -1.3876 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 1.5964 0.7891 2.5056 29 1 4.4992 -0.2073 3.3239 30 1 4.2934 -1.6450 4.3532 31 1 4.0675 -1.7715 2.5924 32 1 1.2061 0.3414 4.9699 33 1 2.6231 -0.4107 5.7416 34 1 2.8287 1.0263 4.7119 35 1 1.7903 -2.7337 2.9539 36 1 2.0166 -2.6070 4.7147 37 1 0.5996 -1.8549 3.9430 38 1 0.8367 0.3350 -2.5982 39 1 2.3888 1.1131 -2.2068 40 1 3.6005 -0.6965 -3.3838 41 1 2.4335 0.0923 -4.4731 42 1 0.8044 -1.7159 -4.0681 43 1 3.1734 -2.2361 -8.0974 44 1 3.0088 -2.9280 -2.3371 45 1 1.4347 -3.6743 -2.7062 46 1 1.4123 -2.5697 -0.4793 47 1 0.2737 -1.7883 -1.6022 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397238865.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:17 Heat of formation + Delta-G solvation = -61.565317 kcal Electronic energy + Delta-G solvation = -23862.248992 eV Core-core repulsion = 20657.745205 eV Total energy + Delta-G solvation = -3204.503788 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.46628 -39.80226 -37.42156 -36.04107 -34.15876 -32.93386 -31.74946 -30.61719 -28.20006 -28.16682 -27.54965 -25.52778 -24.19138 -23.12327 -21.46122 -20.46358 -20.15521 -18.86245 -17.97549 -17.36893 -16.70473 -16.12876 -16.04400 -15.60307 -15.41596 -15.09523 -15.00700 -14.86931 -14.53079 -14.46431 -13.97698 -13.60797 -13.43105 -13.24314 -13.17219 -13.00869 -12.97283 -12.89440 -12.63412 -12.58297 -12.40249 -12.05298 -12.03470 -11.95740 -11.83043 -11.62018 -11.40173 -10.99000 -10.93771 -10.62422 -10.21864 -9.95742 -9.10873 -8.28678 -6.32652 1.30192 1.35974 1.47423 1.79037 2.16826 2.34057 3.06153 3.06863 3.73767 3.96785 3.99785 4.05342 4.11889 4.15706 4.19698 4.26638 4.33049 4.42794 4.56926 4.70106 4.72990 4.75044 4.75181 4.78333 4.83511 4.85332 4.89598 4.93511 4.98172 5.03172 5.04507 5.19128 5.20893 5.25148 5.28714 5.42384 5.43998 5.50667 5.67882 5.75087 5.78875 6.19186 6.20728 6.34240 6.73883 6.77822 7.32193 7.47859 8.89013 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.035494 B = 0.003957 C = 0.003804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 788.686897 B = 7074.323947 C = 7358.724672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.061 3.939 3 H 0.126 0.874 4 C 0.521 3.479 5 O -0.554 6.554 6 N -0.714 5.714 7 C 0.167 3.833 8 C -0.162 4.162 9 C -0.146 4.146 10 C -0.161 4.161 11 N -0.531 5.531 12 C 0.064 3.936 13 C -0.114 4.114 14 C 0.015 3.985 15 C -0.521 4.521 16 H 0.023 0.977 17 C 0.005 3.995 18 N -0.955 5.955 19 Si 0.957 3.043 20 H -0.262 1.262 21 H -0.299 1.299 22 H -0.243 1.243 23 C -0.090 4.090 24 C 0.069 3.931 25 H 0.093 0.907 26 H 0.071 0.929 27 H 0.051 0.949 28 H 0.413 0.587 29 H 0.057 0.943 30 H 0.073 0.927 31 H 0.043 0.957 32 H 0.074 0.926 33 H 0.080 0.920 34 H 0.071 0.929 35 H 0.044 0.956 36 H 0.072 0.928 37 H 0.061 0.939 38 H 0.041 0.959 39 H 0.093 0.907 40 H 0.048 0.952 41 H 0.044 0.956 42 H 0.022 0.978 43 H 0.265 0.735 44 H 0.037 0.963 45 H 0.047 0.953 46 H 0.080 0.920 47 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.081 13.099 26.290 30.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.050 4.050 3 H 0.144 0.856 4 C 0.307 3.693 5 O -0.431 6.431 6 N -0.368 5.368 7 C 0.081 3.919 8 C -0.220 4.220 9 C -0.203 4.203 10 C -0.219 4.219 11 N -0.256 5.256 12 C -0.063 4.063 13 C -0.151 4.151 14 C -0.004 4.004 15 C -0.559 4.559 16 H 0.042 0.958 17 C -0.191 4.191 18 N -0.596 5.596 19 Si 0.783 3.217 20 H -0.188 1.188 21 H -0.227 1.227 22 H -0.166 1.166 23 C -0.128 4.128 24 C -0.058 4.058 25 H 0.112 0.888 26 H 0.090 0.910 27 H 0.070 0.930 28 H 0.250 0.750 29 H 0.076 0.924 30 H 0.092 0.908 31 H 0.062 0.938 32 H 0.093 0.907 33 H 0.099 0.901 34 H 0.090 0.910 35 H 0.063 0.937 36 H 0.091 0.909 37 H 0.080 0.920 38 H 0.059 0.941 39 H 0.111 0.889 40 H 0.067 0.933 41 H 0.062 0.938 42 H 0.040 0.960 43 H 0.074 0.926 44 H 0.056 0.944 45 H 0.066 0.934 46 H 0.098 0.902 47 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -6.194 12.192 26.143 29.504 hybrid contribution -0.689 0.363 -1.160 1.397 sum -6.883 12.555 24.983 28.795 Atomic orbital electron populations 1.22329 0.93651 1.02845 1.04425 1.21767 0.95507 0.99117 0.88646 0.85618 1.20702 0.77538 0.86121 0.84946 1.90627 1.45379 1.20968 1.86140 1.46053 1.64352 1.20459 1.05917 1.20395 0.93248 0.93002 0.85214 1.22192 0.95585 1.01835 1.02429 1.22026 1.03364 0.99360 0.95584 1.22183 1.00068 0.97496 1.02161 1.61669 1.57505 1.04044 1.02362 1.22124 0.99179 0.95925 0.89122 1.21852 1.00270 0.97083 0.95931 1.19125 0.95112 0.93122 0.93009 1.21421 1.35511 1.04596 0.94329 0.95814 1.26008 0.95486 1.02120 0.95475 1.70080 1.46256 1.41185 1.02062 0.85712 0.80118 0.79455 0.76385 1.18767 1.22666 1.16648 1.21358 0.99506 0.97693 0.94267 1.22092 0.94683 0.90650 0.98397 0.88805 0.91009 0.93020 0.75047 0.92432 0.90846 0.93787 0.90740 0.90073 0.91011 0.93704 0.90873 0.92033 0.94055 0.88918 0.93265 0.93824 0.95992 0.92607 0.94417 0.93398 0.90189 0.94527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.13 8.30 71.98 0.60 -2.54 16 2 C 0.06 1.38 2.70 44.17 0.12 1.50 16 3 H 0.13 2.12 7.86 -2.39 -0.02 2.10 16 4 C 0.52 12.71 6.39 87.66 0.56 13.27 16 5 O -0.55 -18.71 10.52 -3.02 -0.03 -18.74 16 6 N -0.71 -11.41 5.11 -422.92 -2.16 -13.57 16 7 C 0.17 2.63 1.06 3.61 0.00 2.63 16 8 C -0.16 -3.19 8.40 71.98 0.60 -2.59 16 9 C -0.15 -1.21 8.59 71.98 0.62 -0.59 16 10 C -0.16 -2.94 8.40 71.98 0.60 -2.34 16 11 N -0.53 -17.15 4.35 -875.52 -3.81 -20.96 16 12 C 0.06 2.06 5.22 86.33 0.45 2.51 16 13 C -0.11 -4.90 4.84 30.64 0.15 -4.75 16 14 C 0.02 0.74 1.75 -11.46 -0.02 0.72 16 15 C -0.52 -31.56 9.14 25.60 0.23 -31.33 16 16 H 0.02 1.61 7.99 -2.91 -0.02 1.58 16 17 C 0.01 0.31 5.45 84.65 0.46 0.77 16 18 N -0.96 -62.22 13.96 21.45 0.30 -61.92 16 19 Si 0.96 45.83 24.37 68.60 1.67 47.51 16 20 H -0.26 -11.77 6.89 99.48 0.69 -11.09 16 21 H -0.30 -14.23 7.11 99.48 0.71 -13.52 16 22 H -0.24 -10.58 6.53 99.48 0.65 -9.93 16 23 C -0.09 -4.04 5.32 30.65 0.16 -3.88 16 24 C 0.07 2.49 4.17 86.33 0.36 2.85 16 25 H 0.09 1.07 8.14 -2.38 -0.02 1.05 16 26 H 0.07 1.29 7.09 -2.39 -0.02 1.27 16 27 H 0.05 1.13 6.45 -2.39 -0.02 1.11 16 28 H 0.41 3.71 8.47 -92.71 -0.79 2.93 16 29 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 30 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 31 H 0.04 1.23 6.16 -2.39 -0.01 1.21 16 32 H 0.07 0.46 8.14 -2.39 -0.02 0.44 16 33 H 0.08 0.57 8.14 -2.39 -0.02 0.55 16 34 H 0.07 0.49 8.14 -2.38 -0.02 0.47 16 35 H 0.04 1.17 6.18 -2.39 -0.01 1.15 16 36 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 37 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 38 H 0.04 1.24 7.13 -2.39 -0.02 1.22 16 39 H 0.09 2.45 7.95 -2.39 -0.02 2.43 16 40 H 0.05 2.28 8.14 -2.38 -0.02 2.26 16 41 H 0.04 1.90 3.38 -2.39 -0.01 1.90 16 42 H 0.02 1.07 7.19 -2.39 -0.02 1.05 16 43 H 0.27 16.08 8.31 -92.71 -0.77 15.31 16 44 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 45 H 0.05 2.14 8.14 -2.38 -0.02 2.12 16 46 H 0.08 2.97 5.90 -2.39 -0.01 2.96 16 47 H 0.04 1.22 6.59 -2.39 -0.02 1.21 16 Total: -1.00 -76.53 344.75 0.96 -75.58 By element: Atomic # 1 Polarization: 15.79 SS G_CDS: 0.08 Total: 15.87 kcal Atomic # 6 Polarization: -28.67 SS G_CDS: 4.91 Total: -23.76 kcal Atomic # 7 Polarization: -90.78 SS G_CDS: -5.67 Total: -96.45 kcal Atomic # 8 Polarization: -18.71 SS G_CDS: -0.03 Total: -18.74 kcal Atomic # 14 Polarization: 45.83 SS G_CDS: 1.67 Total: 47.51 kcal Total: -76.53 0.96 -75.58 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397238865.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.014 kcal (2) G-P(sol) polarization free energy of solvation -76.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.579 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds