Wall clock time and date at job start Tue Mar 31 2020 05:30:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.53006 * 109.47127 * 120.00347 * 2 1 3 5 5 H 1.09007 * 109.47135 * 184.99942 * 4 2 1 6 6 C 1.53001 * 109.46997 * 304.99683 * 4 2 1 7 7 N 1.46490 * 109.47115 * 64.99762 * 4 2 1 8 8 C 1.34783 * 119.99992 * 155.00058 * 7 4 2 9 9 O 1.21280 * 119.99858 * 0.02562 * 8 7 4 10 10 C 1.50695 * 119.99999 * 179.97438 * 8 7 4 11 11 N 1.46904 * 109.47193 * 180.02562 * 10 8 7 12 12 C 1.46858 * 110.99463 * 294.20927 * 11 10 8 13 13 C 1.53039 * 109.51801 * 174.15923 * 12 11 10 14 14 C 1.53117 * 109.28116 * 59.18030 * 13 12 11 15 15 C 1.53121 * 109.16077 * 302.34561 * 14 13 12 16 16 H 1.08997 * 109.50260 * 297.70811 * 15 14 13 17 17 C 1.50705 * 109.50382 * 177.59421 * 15 14 13 18 18 H 1.07999 * 119.99483 * 240.20074 * 17 15 14 19 19 C 1.37873 * 119.99983 * 60.19328 * 17 15 14 20 20 N 1.31513 * 120.00304 * 0.02562 * 19 17 15 21 21 Si 1.86804 * 119.99972 * 179.97438 * 19 17 15 22 22 H 1.48499 * 109.46907 * 0.02562 * 21 19 17 23 23 H 1.48499 * 109.46863 * 120.00107 * 21 19 17 24 24 H 1.48492 * 109.47230 * 240.00169 * 21 19 17 25 25 C 1.46843 * 111.00090 * 170.00318 * 11 10 8 26 26 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 27 27 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 28 28 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 30 30 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 31 31 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 32 32 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 33 33 H 1.08992 * 109.47075 * 180.02562 * 6 4 2 34 34 H 1.09000 * 109.46998 * 300.00082 * 6 4 2 35 35 H 1.08998 * 109.47077 * 59.99896 * 6 4 2 36 36 H 0.96999 * 120.00463 * 335.00090 * 7 4 2 37 37 H 1.09006 * 109.47555 * 300.00047 * 10 8 7 38 38 H 1.09002 * 109.47128 * 60.00278 * 10 8 7 39 39 H 1.09000 * 109.46451 * 294.17468 * 12 11 10 40 40 H 1.08998 * 109.45816 * 54.14890 * 12 11 10 41 41 H 1.09001 * 109.50563 * 299.23967 * 13 12 11 42 42 H 1.08998 * 109.50029 * 179.12329 * 13 12 11 43 43 H 1.09000 * 109.52653 * 182.43604 * 14 13 12 44 44 H 1.09005 * 109.51853 * 62.24762 * 14 13 12 45 45 H 0.97001 * 120.00347 * 180.02562 * 20 19 17 46 46 H 1.08999 * 109.46313 * 305.85234 * 25 11 10 47 47 H 1.09003 * 109.46707 * 65.82342 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7214 1.2492 5 1 3.1264 -0.6444 1.2952 6 6 1.4300 -0.0764 2.4954 7 7 1.6524 -2.1328 1.1905 8 6 2.3686 -3.0568 1.8613 9 8 3.3336 -2.7196 2.5139 10 6 1.9695 -4.5087 1.8014 11 7 2.9010 -5.3064 2.6101 12 6 4.2508 -5.2854 2.0320 13 6 5.2216 -6.0017 2.9735 14 6 4.7557 -7.4460 3.1769 15 6 3.3295 -7.4402 3.7342 16 1 3.3209 -6.9487 4.7070 17 6 2.8413 -8.8583 3.8819 18 1 1.9652 -9.1867 3.3424 19 6 3.5131 -9.7365 4.7055 20 7 4.5797 -9.3365 5.3627 21 14 2.9075 -11.4941 4.8892 22 1 1.6975 -11.6908 4.0510 23 1 3.9713 -12.4325 4.4500 24 1 2.5726 -11.7562 6.3119 25 6 2.4135 -6.6822 2.7706 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 1.8934 -0.5138 -0.8899 30 1 1.6768 1.9562 0.8900 31 1 3.1300 1.4424 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.7936 -0.5899 3.3853 34 1 1.7184 0.9739 2.5390 35 1 0.3437 -0.1532 2.4494 36 1 0.8804 -2.4025 0.6689 37 1 0.9586 -4.6243 2.1925 38 1 2.0003 -4.8516 0.7672 39 1 4.2405 -5.7920 1.0669 40 1 4.5718 -4.2526 1.8965 41 1 5.2428 -5.4875 3.9344 42 1 6.2203 -5.9996 2.5369 43 1 5.4199 -7.9474 3.8809 44 1 4.7715 -7.9717 2.2221 45 1 5.0526 -9.9544 5.9419 46 1 1.4001 -6.6640 3.1715 47 1 2.4118 -7.1823 1.8021 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397669017.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:36 Heat of formation + Delta-G solvation = -52.850811 kcal Electronic energy + Delta-G solvation = -23030.716593 eV Core-core repulsion = 19826.590695 eV Total energy + Delta-G solvation = -3204.125898 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.00282 -38.14353 -36.97209 -33.59505 -33.31264 -31.69251 -29.81632 -29.61368 -27.61031 -26.92992 -24.86852 -24.26110 -22.05347 -21.41495 -20.18791 -19.63063 -18.54515 -16.92816 -16.49575 -16.10044 -15.50954 -15.10269 -14.88177 -14.46708 -14.28671 -13.84717 -13.59865 -13.34838 -13.21630 -13.02111 -12.61743 -12.42834 -12.34264 -12.27969 -12.07698 -11.69140 -11.61312 -11.40576 -11.24939 -10.95043 -10.92748 -10.79599 -10.62481 -10.60141 -10.02022 -9.77735 -9.66083 -9.35183 -9.07711 -8.86232 -8.62628 -8.24636 -7.60222 -5.92654 -3.99151 2.85837 3.14367 3.32508 3.40433 3.43673 4.40345 4.43612 4.53098 4.62741 4.70362 4.95762 5.12259 5.16343 5.25309 5.32381 5.37246 5.47855 5.48361 5.53054 5.55960 5.59505 5.71864 5.79388 5.86092 5.90383 5.95645 5.99075 6.21090 6.22050 6.37637 6.43702 6.53486 6.60483 6.82805 6.89355 7.02446 7.31870 7.40743 7.55912 7.73825 7.80232 7.86993 8.14746 8.24130 8.44336 8.52999 9.05282 9.64838 11.13317 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.039905 B = 0.003099 C = 0.002996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 701.494902 B = 9031.809208 C = 9343.601349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.104 4.104 3 C -0.147 4.147 4 C 0.147 3.853 5 H 0.086 0.914 6 C -0.167 4.167 7 N -0.736 5.736 8 C 0.514 3.486 9 O -0.515 6.515 10 C 0.036 3.964 11 N -0.520 5.520 12 C 0.060 3.940 13 C -0.114 4.114 14 C -0.111 4.111 15 C 0.055 3.945 16 H 0.035 0.965 17 C -0.514 4.514 18 H 0.054 0.946 19 C 0.062 3.938 20 N -0.887 5.887 21 Si 0.890 3.110 22 H -0.274 1.274 23 H -0.285 1.285 24 H -0.284 1.284 25 C 0.068 3.932 26 H 0.055 0.945 27 H 0.062 0.938 28 H 0.054 0.946 29 H 0.074 0.926 30 H 0.060 0.940 31 H 0.057 0.943 32 H 0.057 0.943 33 H 0.062 0.938 34 H 0.063 0.937 35 H 0.059 0.941 36 H 0.396 0.604 37 H 0.098 0.902 38 H 0.054 0.946 39 H 0.015 0.985 40 H 0.075 0.925 41 H 0.062 0.938 42 H 0.044 0.956 43 H 0.090 0.910 44 H 0.028 0.972 45 H 0.259 0.741 46 H 0.059 0.941 47 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.351 18.516 -11.872 23.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.123 4.123 3 C -0.204 4.204 4 C 0.043 3.957 5 H 0.104 0.896 6 C -0.225 4.225 7 N -0.390 5.390 8 C 0.300 3.700 9 O -0.389 6.389 10 C -0.096 4.096 11 N -0.245 5.245 12 C -0.068 4.068 13 C -0.152 4.152 14 C -0.149 4.149 15 C 0.036 3.964 16 H 0.053 0.947 17 C -0.553 4.553 18 H 0.072 0.928 19 C -0.139 4.139 20 N -0.526 5.526 21 Si 0.718 3.282 22 H -0.199 1.199 23 H -0.211 1.211 24 H -0.211 1.211 25 C -0.058 4.058 26 H 0.075 0.925 27 H 0.081 0.919 28 H 0.073 0.927 29 H 0.093 0.907 30 H 0.079 0.921 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.081 0.919 34 H 0.082 0.918 35 H 0.078 0.922 36 H 0.230 0.770 37 H 0.116 0.884 38 H 0.071 0.929 39 H 0.033 0.967 40 H 0.094 0.906 41 H 0.080 0.920 42 H 0.063 0.937 43 H 0.108 0.892 44 H 0.047 0.953 45 H 0.069 0.931 46 H 0.078 0.922 47 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges -6.464 18.888 -10.785 22.691 hybrid contribution -0.795 -1.506 -0.994 1.972 sum -7.260 17.383 -11.779 22.217 Atomic orbital electron populations 1.21938 0.94947 1.01786 1.02223 1.21379 0.96333 0.96811 0.97786 1.21841 1.01303 0.95154 1.02128 1.20899 1.00305 0.80137 0.94402 0.89632 1.22277 1.01121 1.00713 0.98382 1.46176 1.32995 1.07064 1.52799 1.20828 0.82758 0.87914 0.78486 1.90675 1.26923 1.81619 1.39650 1.21949 0.99015 0.90852 0.97788 1.61737 1.01356 1.13586 1.47850 1.22179 0.89081 1.00433 0.95095 1.21627 0.95979 0.98582 0.99019 1.21661 1.00928 0.92371 0.99917 1.18663 0.90323 0.93584 0.93791 0.94653 1.21176 1.11921 0.95670 1.26503 0.92813 1.24942 0.95004 0.98413 0.95540 1.69913 1.18538 1.35044 1.29086 0.86577 0.78705 0.85131 0.77792 1.19895 1.21136 1.21067 1.22364 0.99492 0.84973 0.99002 0.92544 0.91873 0.92735 0.90710 0.92082 0.92390 0.92400 0.91910 0.91767 0.92219 0.76999 0.88377 0.92869 0.96673 0.90625 0.91963 0.93701 0.89182 0.95280 0.93123 0.92244 0.96237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.90 8.58 37.16 0.32 -0.58 16 2 C -0.10 -0.73 2.85 -90.62 -0.26 -0.99 16 3 C -0.15 -0.91 8.95 37.15 0.33 -0.58 16 4 C 0.15 1.43 2.35 -67.93 -0.16 1.27 16 5 H 0.09 1.02 7.58 -51.93 -0.39 0.62 16 6 C -0.17 -1.59 8.75 37.16 0.33 -1.26 16 7 N -0.74 -7.74 5.01 -53.81 -0.27 -8.01 16 8 C 0.51 7.59 7.47 -10.98 -0.08 7.51 16 9 O -0.51 -9.72 13.99 5.56 0.08 -9.64 16 10 C 0.04 0.53 5.45 -4.98 -0.03 0.51 16 11 N -0.52 -10.24 4.40 -236.10 -1.04 -11.28 16 12 C 0.06 1.18 5.11 -3.83 -0.02 1.16 16 13 C -0.11 -2.46 6.09 -26.65 -0.16 -2.62 16 14 C -0.11 -2.74 5.03 -26.61 -0.13 -2.87 16 15 C 0.06 1.42 2.26 -91.69 -0.21 1.21 16 16 H 0.04 1.02 8.14 -51.93 -0.42 0.60 16 17 C -0.51 -14.25 8.56 -34.44 -0.29 -14.55 16 18 H 0.05 1.46 7.74 -52.49 -0.41 1.05 16 19 C 0.06 1.75 5.30 -17.82 -0.09 1.65 16 20 N -0.89 -25.82 11.36 55.43 0.63 -25.19 16 21 Si 0.89 21.44 29.54 -169.99 -5.02 16.42 16 22 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 23 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 24 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 25 C 0.07 1.47 4.68 -3.83 -0.02 1.46 16 26 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 27 H 0.06 0.38 6.35 -51.93 -0.33 0.05 16 28 H 0.05 0.30 6.77 -51.93 -0.35 -0.05 16 29 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.06 0.37 6.57 -51.93 -0.34 0.02 16 31 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.06 0.52 6.57 -51.93 -0.34 0.18 16 35 H 0.06 0.50 6.34 -51.93 -0.33 0.17 16 36 H 0.40 3.10 7.18 -40.82 -0.29 2.81 16 37 H 0.10 1.29 7.99 -51.93 -0.41 0.88 16 38 H 0.05 0.71 8.12 -51.93 -0.42 0.29 16 39 H 0.02 0.29 8.14 -51.93 -0.42 -0.13 16 40 H 0.08 1.48 5.78 -51.93 -0.30 1.18 16 41 H 0.06 1.42 8.14 -51.93 -0.42 1.00 16 42 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 43 H 0.09 2.47 6.17 -51.93 -0.32 2.15 16 44 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 45 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 46 H 0.06 1.23 8.01 -51.93 -0.42 0.82 16 47 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 LS Contribution 356.09 15.07 5.37 5.37 Total: -1.00 -31.42 356.09 -9.18 -40.60 By element: Atomic # 1 Polarization: 8.86 SS G_CDS: -8.44 Total: 0.42 kcal Atomic # 6 Polarization: -8.21 SS G_CDS: -0.48 Total: -8.69 kcal Atomic # 7 Polarization: -43.80 SS G_CDS: -0.68 Total: -44.47 kcal Atomic # 8 Polarization: -9.72 SS G_CDS: 0.08 Total: -9.64 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -31.42 -9.18 -40.60 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397669017.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.253 kcal (2) G-P(sol) polarization free energy of solvation -31.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds