Wall clock time and date at job start Tue Mar 31 2020 05:30:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.53006 * 109.47127 * 120.00347 * 2 1 3 5 5 H 1.09007 * 109.47135 * 184.99942 * 4 2 1 6 6 C 1.53001 * 109.46997 * 304.99683 * 4 2 1 7 7 N 1.46490 * 109.47115 * 64.99762 * 4 2 1 8 8 C 1.34783 * 119.99992 * 155.00058 * 7 4 2 9 9 O 1.21280 * 119.99858 * 0.02562 * 8 7 4 10 10 C 1.50695 * 119.99999 * 179.97438 * 8 7 4 11 11 N 1.46904 * 109.47193 * 180.02562 * 10 8 7 12 12 C 1.46858 * 110.99463 * 294.20927 * 11 10 8 13 13 C 1.53039 * 109.51801 * 174.15923 * 12 11 10 14 14 C 1.53117 * 109.28116 * 59.18030 * 13 12 11 15 15 C 1.53121 * 109.16077 * 302.34561 * 14 13 12 16 16 H 1.08997 * 109.50260 * 297.70811 * 15 14 13 17 17 C 1.50705 * 109.50382 * 177.59421 * 15 14 13 18 18 H 1.07999 * 119.99483 * 240.20074 * 17 15 14 19 19 C 1.37873 * 119.99983 * 60.19328 * 17 15 14 20 20 N 1.31513 * 120.00304 * 0.02562 * 19 17 15 21 21 Si 1.86804 * 119.99972 * 179.97438 * 19 17 15 22 22 H 1.48499 * 109.46907 * 0.02562 * 21 19 17 23 23 H 1.48499 * 109.46863 * 120.00107 * 21 19 17 24 24 H 1.48492 * 109.47230 * 240.00169 * 21 19 17 25 25 C 1.46843 * 111.00090 * 170.00318 * 11 10 8 26 26 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 27 27 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 28 28 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 30 30 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 31 31 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 32 32 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 33 33 H 1.08992 * 109.47075 * 180.02562 * 6 4 2 34 34 H 1.09000 * 109.46998 * 300.00082 * 6 4 2 35 35 H 1.08998 * 109.47077 * 59.99896 * 6 4 2 36 36 H 0.96999 * 120.00463 * 335.00090 * 7 4 2 37 37 H 1.09006 * 109.47555 * 300.00047 * 10 8 7 38 38 H 1.09002 * 109.47128 * 60.00278 * 10 8 7 39 39 H 1.09000 * 109.46451 * 294.17468 * 12 11 10 40 40 H 1.08998 * 109.45816 * 54.14890 * 12 11 10 41 41 H 1.09001 * 109.50563 * 299.23967 * 13 12 11 42 42 H 1.08998 * 109.50029 * 179.12329 * 13 12 11 43 43 H 1.09000 * 109.52653 * 182.43604 * 14 13 12 44 44 H 1.09005 * 109.51853 * 62.24762 * 14 13 12 45 45 H 0.97001 * 120.00347 * 180.02562 * 20 19 17 46 46 H 1.08999 * 109.46313 * 305.85234 * 25 11 10 47 47 H 1.09003 * 109.46707 * 65.82342 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7214 1.2492 5 1 3.1264 -0.6444 1.2952 6 6 1.4300 -0.0764 2.4954 7 7 1.6524 -2.1328 1.1905 8 6 2.3686 -3.0568 1.8613 9 8 3.3336 -2.7196 2.5139 10 6 1.9695 -4.5087 1.8014 11 7 2.9010 -5.3064 2.6101 12 6 4.2508 -5.2854 2.0320 13 6 5.2216 -6.0017 2.9735 14 6 4.7557 -7.4460 3.1769 15 6 3.3295 -7.4402 3.7342 16 1 3.3209 -6.9487 4.7070 17 6 2.8413 -8.8583 3.8819 18 1 1.9652 -9.1867 3.3424 19 6 3.5131 -9.7365 4.7055 20 7 4.5797 -9.3365 5.3627 21 14 2.9075 -11.4941 4.8892 22 1 1.6975 -11.6908 4.0510 23 1 3.9713 -12.4325 4.4500 24 1 2.5726 -11.7562 6.3119 25 6 2.4135 -6.6822 2.7706 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 1.8934 -0.5138 -0.8899 30 1 1.6768 1.9562 0.8900 31 1 3.1300 1.4424 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.7936 -0.5899 3.3853 34 1 1.7184 0.9739 2.5390 35 1 0.3437 -0.1532 2.4494 36 1 0.8804 -2.4025 0.6689 37 1 0.9586 -4.6243 2.1925 38 1 2.0003 -4.8516 0.7672 39 1 4.2405 -5.7920 1.0669 40 1 4.5718 -4.2526 1.8965 41 1 5.2428 -5.4875 3.9344 42 1 6.2203 -5.9996 2.5369 43 1 5.4199 -7.9474 3.8809 44 1 4.7715 -7.9717 2.2221 45 1 5.0526 -9.9544 5.9419 46 1 1.4001 -6.6640 3.1715 47 1 2.4118 -7.1823 1.8021 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397669017.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:35 Heat of formation + Delta-G solvation = -73.406331 kcal Electronic energy + Delta-G solvation = -23031.607947 eV Core-core repulsion = 19826.590695 eV Total energy + Delta-G solvation = -3205.017252 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.13955 -39.52961 -38.07006 -35.46948 -34.26636 -33.46166 -31.66503 -30.51043 -28.35204 -27.96283 -26.89836 -25.14512 -23.61686 -23.21689 -21.32139 -20.41356 -20.31651 -18.43975 -17.99607 -17.25013 -16.66360 -16.50071 -16.11220 -16.01727 -15.54071 -15.09419 -14.76724 -14.69907 -14.41677 -14.27166 -13.88421 -13.85352 -13.74596 -13.29349 -13.02959 -12.98300 -12.85232 -12.74260 -12.49105 -12.46877 -12.29729 -11.95117 -11.77008 -11.73359 -11.52598 -11.48783 -11.45359 -11.07799 -10.65868 -10.58747 -10.33467 -10.00495 -9.10395 -8.05942 -6.20845 1.42258 1.43377 1.55120 1.71710 2.13912 2.45136 3.16280 3.21157 3.74477 3.90535 3.95882 4.14090 4.18048 4.24578 4.32524 4.40619 4.46322 4.48969 4.51877 4.60220 4.63685 4.75635 4.83568 4.87963 4.88554 4.96434 5.03244 5.04711 5.06391 5.12553 5.18112 5.19562 5.27803 5.38350 5.43276 5.51801 5.56523 5.64290 5.65602 5.95903 6.11587 6.21317 6.23416 6.46140 6.67795 6.92850 7.38323 7.47377 8.99332 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.039905 B = 0.003099 C = 0.002996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 701.494902 B = 9031.809208 C = 9343.601349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.095 4.095 3 C -0.147 4.147 4 C 0.145 3.855 5 H 0.060 0.940 6 C -0.162 4.162 7 N -0.715 5.715 8 C 0.514 3.486 9 O -0.564 6.564 10 C 0.035 3.965 11 N -0.542 5.542 12 C 0.069 3.931 13 C -0.109 4.109 14 C -0.102 4.102 15 C 0.051 3.949 16 H -0.009 1.009 17 C -0.531 4.531 18 H 0.058 0.942 19 C 0.010 3.990 20 N -0.919 5.919 21 Si 0.958 3.042 22 H -0.263 1.263 23 H -0.282 1.282 24 H -0.283 1.283 25 C 0.083 3.917 26 H 0.067 0.933 27 H 0.063 0.937 28 H 0.059 0.941 29 H 0.076 0.924 30 H 0.063 0.937 31 H 0.050 0.950 32 H 0.070 0.930 33 H 0.029 0.971 34 H 0.078 0.922 35 H 0.074 0.926 36 H 0.412 0.588 37 H 0.120 0.880 38 H 0.081 0.919 39 H 0.028 0.972 40 H 0.079 0.921 41 H 0.039 0.961 42 H 0.064 0.936 43 H 0.056 0.944 44 H 0.028 0.972 45 H 0.259 0.741 46 H 0.066 0.934 47 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.369 19.099 -14.046 25.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.114 4.114 3 C -0.205 4.205 4 C 0.041 3.959 5 H 0.079 0.921 6 C -0.220 4.220 7 N -0.369 5.369 8 C 0.301 3.699 9 O -0.442 6.442 10 C -0.096 4.096 11 N -0.267 5.267 12 C -0.058 4.058 13 C -0.146 4.146 14 C -0.140 4.140 15 C 0.032 3.968 16 H 0.009 0.991 17 C -0.570 4.570 18 H 0.076 0.924 19 C -0.189 4.189 20 N -0.559 5.559 21 Si 0.784 3.216 22 H -0.187 1.187 23 H -0.208 1.208 24 H -0.209 1.209 25 C -0.044 4.044 26 H 0.086 0.914 27 H 0.082 0.918 28 H 0.078 0.922 29 H 0.095 0.905 30 H 0.082 0.918 31 H 0.069 0.931 32 H 0.089 0.911 33 H 0.048 0.952 34 H 0.097 0.903 35 H 0.093 0.907 36 H 0.250 0.750 37 H 0.138 0.862 38 H 0.099 0.901 39 H 0.046 0.954 40 H 0.097 0.903 41 H 0.058 0.942 42 H 0.083 0.917 43 H 0.075 0.925 44 H 0.047 0.953 45 H 0.068 0.932 46 H 0.085 0.915 47 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -8.534 19.497 -13.003 24.941 hybrid contribution -0.176 -1.607 -0.314 1.647 sum -8.710 17.890 -13.316 23.943 Atomic orbital electron populations 1.21946 0.93652 1.02370 1.02852 1.21319 0.97276 0.96813 0.96025 1.21855 1.00935 0.94727 1.02943 1.20989 0.99077 0.79744 0.96110 0.92147 1.22233 1.01901 1.01154 0.96697 1.46000 1.32604 1.06934 1.51407 1.20830 0.82411 0.88395 0.78260 1.90666 1.29200 1.82262 1.42033 1.22056 0.98700 0.90162 0.98675 1.61565 1.02209 1.12808 1.50098 1.22042 0.88773 1.00278 0.94738 1.21539 0.97846 0.96439 0.98817 1.21465 0.99877 0.94048 0.98631 1.18595 0.92022 0.93221 0.92934 0.99091 1.21548 1.12068 0.96782 1.26605 0.92385 1.25793 0.95119 1.02708 0.95258 1.70075 1.19669 1.36457 1.29663 0.85508 0.78477 0.79875 0.77785 1.18692 1.20769 1.20857 1.22032 0.98562 0.85809 0.97988 0.91397 0.91817 0.92184 0.90530 0.91787 0.93087 0.91073 0.95183 0.90306 0.90695 0.75011 0.86249 0.90113 0.95378 0.90275 0.94203 0.91716 0.92544 0.95338 0.93160 0.91526 0.95547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.30 8.58 71.98 0.62 -0.68 16 2 C -0.10 -1.11 2.85 -10.79 -0.03 -1.14 16 3 C -0.15 -1.52 8.95 71.98 0.64 -0.88 16 4 C 0.15 2.63 2.35 45.00 0.11 2.74 16 5 H 0.06 1.44 7.58 -2.38 -0.02 1.42 16 6 C -0.16 -2.91 8.75 71.98 0.63 -2.28 16 7 N -0.72 -13.62 5.01 -442.53 -2.22 -15.84 16 8 C 0.51 14.54 7.47 87.65 0.65 15.19 16 9 O -0.56 -21.39 13.99 -3.03 -0.04 -21.44 16 10 C 0.03 0.96 5.45 85.55 0.47 1.43 16 11 N -0.54 -20.87 4.40 -900.88 -3.96 -24.83 16 12 C 0.07 2.68 5.11 86.32 0.44 3.12 16 13 C -0.11 -4.75 6.09 30.65 0.19 -4.57 16 14 C -0.10 -5.18 5.03 30.67 0.15 -5.02 16 15 C 0.05 2.70 2.26 -11.48 -0.03 2.67 16 16 H -0.01 -0.56 8.14 -2.39 -0.02 -0.58 16 17 C -0.53 -29.79 8.56 25.60 0.22 -29.57 16 18 H 0.06 3.12 7.74 -2.91 -0.02 3.10 16 19 C 0.01 0.54 5.30 84.65 0.45 0.99 16 20 N -0.92 -55.08 11.36 21.45 0.24 -54.84 16 21 Si 0.96 44.20 29.54 68.60 2.03 46.22 16 22 H -0.26 -11.55 7.11 99.48 0.71 -10.84 16 23 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 24 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 25 C 0.08 3.53 4.68 86.33 0.40 3.93 16 26 H 0.07 0.47 8.14 -2.39 -0.02 0.45 16 27 H 0.06 0.56 6.35 -2.39 -0.02 0.55 16 28 H 0.06 0.45 6.77 -2.38 -0.02 0.44 16 29 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.06 0.63 6.57 -2.39 -0.02 0.61 16 31 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 32 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 33 H 0.03 0.74 8.14 -2.39 -0.02 0.72 16 34 H 0.08 1.17 6.57 -2.39 -0.02 1.15 16 35 H 0.07 1.10 6.34 -2.39 -0.02 1.09 16 36 H 0.41 5.16 7.18 -92.71 -0.67 4.49 16 37 H 0.12 2.78 7.99 -2.38 -0.02 2.76 16 38 H 0.08 1.84 8.12 -2.39 -0.02 1.82 16 39 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16 40 H 0.08 3.06 5.78 -2.39 -0.01 3.04 16 41 H 0.04 1.89 8.14 -2.39 -0.02 1.87 16 42 H 0.06 2.52 8.14 -2.39 -0.02 2.50 16 43 H 0.06 3.23 6.17 -2.39 -0.01 3.22 16 44 H 0.03 1.40 8.14 -2.38 -0.02 1.38 16 45 H 0.26 14.74 8.31 -92.71 -0.77 13.97 16 46 H 0.07 2.69 8.01 -2.39 -0.02 2.67 16 47 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 Total: -1.00 -70.34 356.09 1.23 -69.10 By element: Atomic # 1 Polarization: 15.42 SS G_CDS: 0.27 Total: 15.68 kcal Atomic # 6 Polarization: -18.98 SS G_CDS: 4.92 Total: -14.07 kcal Atomic # 7 Polarization: -89.58 SS G_CDS: -5.94 Total: -95.51 kcal Atomic # 8 Polarization: -21.39 SS G_CDS: -0.04 Total: -21.44 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 2.03 Total: 46.22 kcal Total: -70.34 1.23 -69.10 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397669017.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.302 kcal (2) G-P(sol) polarization free energy of solvation -70.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.105 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds