Wall clock time and date at job start Tue Mar 31 2020 05:30:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52994 * 109.47126 * 2 1 4 4 C 1.52995 * 109.46706 * 119.99987 * 2 1 3 5 5 H 1.09006 * 109.47403 * 299.99532 * 4 2 1 6 6 C 1.53001 * 109.47027 * 180.02562 * 4 2 1 7 7 N 1.46502 * 109.47526 * 60.00073 * 4 2 1 8 8 C 1.34771 * 119.99852 * 204.99980 * 7 4 2 9 9 O 1.21285 * 120.00581 * 359.97438 * 8 7 4 10 10 C 1.50699 * 120.00016 * 179.97438 * 8 7 4 11 11 N 1.46895 * 109.47542 * 180.02562 * 10 8 7 12 12 C 1.46850 * 111.00333 * 66.04416 * 11 10 8 13 13 C 1.53036 * 109.52384 * 174.16360 * 12 11 10 14 14 C 1.53120 * 109.27700 * 59.18090 * 13 12 11 15 15 C 1.53120 * 109.15972 * 302.34018 * 14 13 12 16 16 H 1.08997 * 109.50809 * 297.71813 * 15 14 13 17 17 C 1.50703 * 109.50080 * 177.59961 * 15 14 13 18 18 H 1.08006 * 119.99534 * 240.00438 * 17 15 14 19 19 C 1.37877 * 120.00107 * 60.00519 * 17 15 14 20 20 N 1.31516 * 119.99901 * 359.97438 * 19 17 15 21 21 Si 1.86800 * 119.99711 * 180.02562 * 19 17 15 22 22 H 1.48498 * 109.47131 * 89.99759 * 21 19 17 23 23 H 1.48504 * 109.46500 * 209.99809 * 21 19 17 24 24 H 1.48494 * 109.47320 * 329.99171 * 21 19 17 25 25 C 1.46850 * 110.99945 * 301.83348 * 11 10 8 26 26 H 1.09000 * 109.46866 * 300.00567 * 1 2 3 27 27 H 1.08998 * 109.46821 * 59.99914 * 1 2 3 28 28 H 1.08999 * 109.47078 * 179.97438 * 1 2 3 29 29 H 1.08993 * 109.46613 * 239.99693 * 2 1 3 30 30 H 1.08996 * 109.47058 * 179.97438 * 3 2 1 31 31 H 1.09007 * 109.47403 * 299.99540 * 3 2 1 32 32 H 1.08997 * 109.47318 * 59.99632 * 3 2 1 33 33 H 1.08998 * 109.47142 * 180.02562 * 6 4 2 34 34 H 1.09003 * 109.46844 * 300.00038 * 6 4 2 35 35 H 1.08999 * 109.47615 * 59.99320 * 6 4 2 36 36 H 0.96995 * 119.99474 * 24.99408 * 7 4 2 37 37 H 1.09000 * 109.47215 * 59.99207 * 10 8 7 38 38 H 1.09007 * 109.47214 * 299.99929 * 10 8 7 39 39 H 1.08995 * 109.45831 * 54.14149 * 12 11 10 40 40 H 1.08998 * 109.45719 * 294.17998 * 12 11 10 41 41 H 1.08998 * 109.49982 * 179.12006 * 13 12 11 42 42 H 1.08992 * 109.50379 * 299.23548 * 13 12 11 43 43 H 1.08996 * 109.52458 * 62.25353 * 14 13 12 44 44 H 1.08999 * 109.51695 * 182.37635 * 14 13 12 45 45 H 0.96993 * 120.00001 * 180.02562 * 20 19 17 46 46 H 1.09007 * 109.46080 * 65.82377 * 25 11 10 47 47 H 1.09001 * 109.45527 * 305.85274 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 1.6767 -0.2074 2.1393 6 6 3.5700 -0.7207 1.2496 7 7 1.5516 -2.1025 1.2493 8 6 1.4229 -2.7716 2.4120 9 8 1.7117 -2.2306 3.4584 10 6 0.9200 -4.1922 2.4122 11 7 0.8701 -4.6939 3.7919 12 6 -0.1341 -3.9679 4.5799 13 6 -0.2611 -4.6104 5.9631 14 6 1.0976 -4.5661 6.6678 15 6 2.1356 -5.2873 5.8036 16 1 1.8531 -6.3341 5.6930 17 6 3.4883 -5.1973 6.4620 18 1 4.3085 -4.7187 5.9474 19 6 3.6787 -5.7258 7.7211 20 7 2.6798 -6.3081 8.3478 21 14 5.3552 -5.6136 8.5373 22 1 5.4399 -4.3564 9.3232 23 1 5.5442 -6.7764 9.4415 24 1 6.4140 -5.6189 7.4962 25 6 2.1933 -4.6252 4.4251 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5139 -0.8899 30 1 3.1300 1.4424 0.0005 31 1 1.6768 1.9563 -0.8901 32 1 1.6767 1.9563 0.8899 33 1 3.9333 -1.2350 2.1394 34 1 3.9337 -1.2343 0.3596 35 1 3.9331 0.3070 1.2498 36 1 1.3209 -2.5353 0.4125 37 1 1.5922 -4.8157 1.8225 38 1 -0.0793 -4.2240 1.9781 39 1 -1.0963 -4.0106 4.0698 40 1 0.1729 -2.9278 4.6894 41 1 -0.9952 -4.0616 6.5531 42 1 -0.5814 -5.6465 5.8550 43 1 1.4000 -3.5287 6.8110 44 1 1.0217 -5.0604 7.6363 45 1 2.8136 -6.6796 9.2337 46 1 2.4893 -3.5819 4.5354 47 1 2.9212 -5.1454 3.8025 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397669025.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:41 Heat of formation + Delta-G solvation = -51.271471 kcal Electronic energy + Delta-G solvation = -23583.607750 eV Core-core repulsion = 20379.550337 eV Total energy + Delta-G solvation = -3204.057413 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.16971 -38.08035 -36.60439 -33.52009 -33.30907 -31.65767 -30.10237 -29.69125 -27.55686 -26.45262 -24.81174 -23.69192 -22.02510 -21.27237 -20.48307 -20.04604 -18.57358 -16.77103 -16.59567 -16.13074 -15.10852 -14.91754 -14.71656 -14.41884 -14.16178 -14.00119 -13.57596 -13.56758 -13.11949 -12.85426 -12.48881 -12.38649 -12.19613 -12.04604 -11.90724 -11.68753 -11.55291 -11.28226 -11.23535 -11.12357 -10.84315 -10.71439 -10.55865 -10.47389 -10.04575 -9.89366 -9.66827 -9.32992 -8.93367 -8.88989 -8.56828 -8.18355 -7.37782 -5.86058 -3.90949 2.84937 3.27532 3.38310 3.44206 3.47896 4.40408 4.47825 4.61684 4.64444 4.75264 5.07038 5.20718 5.23748 5.32514 5.37290 5.42492 5.43793 5.56028 5.58288 5.62556 5.64913 5.76205 5.82764 5.83326 5.95172 6.06153 6.08006 6.22074 6.25853 6.45904 6.57217 6.67193 6.74063 6.90719 7.01408 7.21305 7.37001 7.46722 7.60398 7.75954 7.87105 7.92005 8.23818 8.30860 8.47722 8.63382 9.12955 9.72231 11.20065 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.022277 B = 0.004116 C = 0.003679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1256.601374 B = 6800.293426 C = 7608.085166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.102 4.102 3 C -0.147 4.147 4 C 0.144 3.856 5 H 0.085 0.915 6 C -0.165 4.165 7 N -0.733 5.733 8 C 0.477 3.523 9 O -0.520 6.520 10 C 0.035 3.965 11 N -0.514 5.514 12 C 0.052 3.948 13 C -0.115 4.115 14 C -0.108 4.108 15 C 0.057 3.943 16 H 0.029 0.971 17 C -0.508 4.508 18 H 0.052 0.948 19 C 0.061 3.939 20 N -0.890 5.890 21 Si 0.889 3.111 22 H -0.282 1.282 23 H -0.287 1.287 24 H -0.275 1.275 25 C 0.047 3.953 26 H 0.055 0.945 27 H 0.054 0.946 28 H 0.056 0.944 29 H 0.073 0.927 30 H 0.061 0.939 31 H 0.056 0.944 32 H 0.057 0.943 33 H 0.063 0.937 34 H 0.054 0.946 35 H 0.064 0.936 36 H 0.395 0.605 37 H 0.098 0.902 38 H 0.094 0.906 39 H 0.049 0.951 40 H 0.050 0.950 41 H 0.044 0.956 42 H 0.057 0.943 43 H 0.031 0.969 44 H 0.088 0.912 45 H 0.258 0.742 46 H 0.063 0.937 47 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.157 10.927 -18.548 22.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.121 4.121 3 C -0.205 4.205 4 C 0.039 3.961 5 H 0.103 0.897 6 C -0.224 4.224 7 N -0.386 5.386 8 C 0.263 3.737 9 O -0.395 6.395 10 C -0.097 4.097 11 N -0.236 5.236 12 C -0.076 4.076 13 C -0.153 4.153 14 C -0.146 4.146 15 C 0.038 3.962 16 H 0.047 0.953 17 C -0.547 4.547 18 H 0.070 0.930 19 C -0.139 4.139 20 N -0.529 5.529 21 Si 0.717 3.283 22 H -0.208 1.208 23 H -0.213 1.213 24 H -0.200 1.200 25 C -0.079 4.079 26 H 0.074 0.926 27 H 0.073 0.927 28 H 0.075 0.925 29 H 0.091 0.909 30 H 0.080 0.920 31 H 0.075 0.925 32 H 0.076 0.924 33 H 0.082 0.918 34 H 0.073 0.927 35 H 0.083 0.917 36 H 0.229 0.771 37 H 0.116 0.884 38 H 0.112 0.888 39 H 0.067 0.933 40 H 0.068 0.932 41 H 0.063 0.937 42 H 0.075 0.925 43 H 0.050 0.950 44 H 0.106 0.894 45 H 0.068 0.932 46 H 0.081 0.919 47 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -5.132 10.706 -17.580 21.213 hybrid contribution 1.074 0.706 0.004 1.286 sum -4.058 11.412 -17.575 21.345 Atomic orbital electron populations 1.21829 0.94777 1.02014 1.01775 1.21382 0.96260 0.96785 0.97711 1.21860 1.01446 0.95155 1.02033 1.20941 0.93902 0.82661 0.98566 0.89703 1.22233 0.95514 1.02131 1.02482 1.46388 1.68515 1.14311 1.09429 1.22629 0.77604 0.90030 0.83474 1.90688 1.48710 1.69307 1.30808 1.22379 1.02191 0.89788 0.95380 1.62482 1.09550 1.51887 0.99672 1.22175 0.93394 0.97147 0.94900 1.21642 0.99693 0.99764 0.94185 1.21612 0.92024 0.99287 1.01706 1.18624 0.94221 0.95071 0.88241 0.95313 1.21162 0.95768 1.36643 1.01137 0.92991 1.24928 0.96459 0.95278 0.97263 1.69900 1.30462 1.38735 1.13842 0.86647 0.84852 0.77422 0.79368 1.20828 1.21325 1.20045 1.22638 0.86359 1.01415 0.97477 0.92574 0.92696 0.92475 0.90882 0.92047 0.92454 0.92390 0.91815 0.92732 0.91684 0.77143 0.88366 0.88830 0.93273 0.93207 0.93725 0.92467 0.95018 0.89374 0.93214 0.91946 0.93369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 9.04 37.16 0.34 -0.76 16 2 C -0.10 -0.78 2.56 -90.62 -0.23 -1.01 16 3 C -0.15 -1.03 8.84 37.15 0.33 -0.70 16 4 C 0.14 1.53 2.16 -67.93 -0.15 1.38 16 5 H 0.08 1.12 7.58 -51.93 -0.39 0.73 16 6 C -0.17 -1.79 9.13 37.16 0.34 -1.45 16 7 N -0.73 -7.94 4.39 -53.80 -0.24 -8.18 16 8 C 0.48 7.15 7.21 -10.99 -0.08 7.07 16 9 O -0.52 -10.25 11.29 5.55 0.06 -10.19 16 10 C 0.04 0.50 5.86 -4.98 -0.03 0.47 16 11 N -0.51 -9.89 4.86 -236.11 -1.15 -11.04 16 12 C 0.05 0.99 5.10 -3.83 -0.02 0.97 16 13 C -0.11 -2.43 6.09 -26.65 -0.16 -2.59 16 14 C -0.11 -2.76 5.02 -26.61 -0.13 -2.89 16 15 C 0.06 1.52 2.26 -91.69 -0.21 1.32 16 16 H 0.03 0.84 8.14 -51.93 -0.42 0.41 16 17 C -0.51 -14.73 8.56 -34.44 -0.29 -15.03 16 18 H 0.05 1.50 7.74 -52.48 -0.41 1.10 16 19 C 0.06 1.77 5.30 -17.82 -0.09 1.68 16 20 N -0.89 -26.37 11.35 55.43 0.63 -25.74 16 21 Si 0.89 22.15 29.54 -169.99 -5.02 17.13 16 22 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 23 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 24 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 25 C 0.05 1.09 4.20 -3.83 -0.02 1.07 16 26 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.06 0.42 7.45 -51.93 -0.39 0.04 16 29 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 30 H 0.06 0.42 6.43 -51.93 -0.33 0.08 16 31 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.06 0.61 6.43 -51.93 -0.33 0.28 16 36 H 0.39 3.08 8.39 -40.82 -0.34 2.74 16 37 H 0.10 1.24 8.14 -51.93 -0.42 0.82 16 38 H 0.09 1.08 8.06 -51.93 -0.42 0.66 16 39 H 0.05 0.81 8.06 -51.93 -0.42 0.39 16 40 H 0.05 1.04 6.00 -51.93 -0.31 0.73 16 41 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 42 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 43 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 44 H 0.09 2.47 6.15 -51.93 -0.32 2.15 16 45 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 46 H 0.06 1.55 5.36 -51.92 -0.28 1.27 16 47 H 0.05 1.09 8.12 -51.93 -0.42 0.67 16 LS Contribution 355.85 15.07 5.36 5.36 Total: -1.00 -32.21 355.85 -9.33 -41.55 By element: Atomic # 1 Polarization: 10.16 SS G_CDS: -8.57 Total: 1.58 kcal Atomic # 6 Polarization: -10.07 SS G_CDS: -0.41 Total: -10.48 kcal Atomic # 7 Polarization: -44.20 SS G_CDS: -0.75 Total: -44.96 kcal Atomic # 8 Polarization: -10.25 SS G_CDS: 0.06 Total: -10.19 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -32.21 -9.33 -41.55 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397669025.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.724 kcal (2) G-P(sol) polarization free energy of solvation -32.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.548 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds