Wall clock time and date at job start Tue Mar 31 2020 05:30:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52993 * 109.47062 * 2 1 4 4 C 1.52998 * 109.46899 * 119.99875 * 2 1 3 5 5 H 1.09001 * 109.47170 * 300.00146 * 4 2 1 6 6 C 1.53003 * 109.46966 * 179.97438 * 4 2 1 7 7 N 1.46497 * 109.47127 * 60.00119 * 4 2 1 8 8 C 1.34779 * 120.00163 * 204.99641 * 7 4 2 9 9 O 1.21284 * 119.99606 * 0.02562 * 8 7 4 10 10 C 1.50697 * 120.00265 * 180.27353 * 8 7 4 11 11 N 1.46894 * 109.47436 * 173.45934 * 10 8 7 12 12 C 1.46847 * 111.00301 * 169.40141 * 11 10 8 13 13 C 1.53039 * 109.52415 * 185.84283 * 12 11 10 14 14 C 1.53126 * 109.27449 * 300.81595 * 13 12 11 15 15 C 1.53124 * 109.15864 * 57.65819 * 14 13 12 16 16 H 1.08995 * 109.53699 * 62.30394 * 15 14 13 17 17 C 1.50700 * 109.50184 * 182.40032 * 15 14 13 18 18 H 1.08004 * 119.99925 * 119.80016 * 17 15 14 19 19 C 1.37869 * 120.00292 * 299.80456 * 17 15 14 20 20 N 1.31512 * 120.00422 * 179.97438 * 19 17 15 21 21 Si 1.86803 * 120.00050 * 359.97438 * 19 17 15 22 22 H 1.48497 * 109.47430 * 89.99874 * 21 19 17 23 23 H 1.48500 * 109.47046 * 210.00476 * 21 19 17 24 24 H 1.48504 * 109.46942 * 329.99792 * 21 19 17 25 25 C 1.46847 * 111.00173 * 293.61382 * 11 10 8 26 26 H 1.09003 * 109.46977 * 59.99876 * 1 2 3 27 27 H 1.08998 * 109.47332 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47329 * 300.00076 * 1 2 3 29 29 H 1.08998 * 109.46598 * 239.99886 * 2 1 3 30 30 H 1.09005 * 109.47377 * 180.02562 * 3 2 1 31 31 H 1.09003 * 109.47326 * 299.99911 * 3 2 1 32 32 H 1.08995 * 109.47528 * 59.99914 * 3 2 1 33 33 H 1.08997 * 109.46633 * 60.00211 * 6 4 2 34 34 H 1.09001 * 109.46999 * 179.97438 * 6 4 2 35 35 H 1.09001 * 109.47611 * 300.00262 * 6 4 2 36 36 H 0.97001 * 120.00008 * 24.99738 * 7 4 2 37 37 H 1.09006 * 109.47110 * 293.46294 * 10 8 7 38 38 H 1.09005 * 109.46937 * 53.45839 * 10 8 7 39 39 H 1.08996 * 109.45875 * 305.85218 * 12 11 10 40 40 H 1.08992 * 109.46460 * 65.82544 * 12 11 10 41 41 H 1.08994 * 109.50626 * 180.88030 * 13 12 11 42 42 H 1.08997 * 109.54011 * 60.77303 * 13 12 11 43 43 H 1.08995 * 109.52557 * 297.75041 * 14 13 12 44 44 H 1.08999 * 109.57196 * 177.59079 * 14 13 12 45 45 H 0.97003 * 120.00529 * 179.97438 * 20 19 17 46 46 H 1.09012 * 109.46038 * 294.17527 * 25 11 10 47 47 H 1.08993 * 109.46374 * 54.13657 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7212 1.2493 5 1 1.6766 -0.2074 2.1392 6 6 3.5700 -0.7218 1.2490 7 7 1.5516 -2.1024 1.2493 8 6 1.4229 -2.7717 2.4120 9 8 1.7109 -2.2303 3.4584 10 6 0.9264 -4.1946 2.4115 11 7 1.0235 -4.7476 3.7689 12 6 0.3226 -6.0344 3.8643 13 6 0.3194 -6.5085 5.3194 14 6 1.7638 -6.6555 5.8062 15 6 2.4854 -5.3139 5.6511 16 1 1.9998 -4.5645 6.2760 17 6 3.9243 -5.4649 6.0729 18 1 4.7175 -5.2673 5.3670 19 6 4.2282 -5.8554 7.3597 20 7 5.4838 -5.9876 7.7277 21 14 2.8563 -6.1966 8.5808 22 1 2.4691 -7.6281 8.5031 23 1 3.3273 -5.8850 9.9543 24 1 1.6819 -5.3477 8.2559 25 6 2.4256 -4.8745 4.1865 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8932 -0.5139 -0.8900 30 1 3.1300 1.4425 -0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9563 0.8899 33 1 3.9336 0.3057 1.2487 34 1 3.9333 -1.2352 2.1392 35 1 3.9330 -1.2359 0.3590 36 1 1.3209 -2.5353 0.4124 37 1 -0.1129 -4.2166 2.0836 38 1 1.5346 -4.7913 1.7317 39 1 -0.7044 -5.9150 3.5191 40 1 0.8309 -6.7718 3.2432 41 1 -0.1872 -7.4711 5.3875 42 1 -0.2010 -5.7786 5.9395 43 1 2.2731 -7.4140 5.2118 44 1 1.7672 -6.9518 6.8552 45 1 5.6977 -6.2620 8.6332 46 1 2.9242 -5.6174 3.5637 47 1 2.9262 -3.9127 4.0751 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397669028.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:43 Heat of formation + Delta-G solvation = -46.358955 kcal Electronic energy + Delta-G solvation = -23366.294522 eV Core-core repulsion = 20162.450131 eV Total energy + Delta-G solvation = -3203.844390 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.94335 -38.25510 -36.91296 -33.71323 -33.24343 -31.97535 -30.20002 -30.11469 -27.69846 -26.69623 -24.88626 -23.77668 -22.47019 -21.12819 -20.44180 -20.00533 -18.81528 -16.89324 -16.64623 -16.41276 -15.38716 -15.21785 -14.69781 -14.37792 -14.17739 -14.01690 -13.68185 -13.56725 -13.22220 -12.90105 -12.80727 -12.52508 -12.45306 -12.31708 -12.18462 -11.98461 -11.72786 -11.47098 -11.27971 -11.10456 -11.04205 -10.96653 -10.68610 -10.42493 -10.04696 -9.91427 -9.60970 -9.40077 -9.03618 -8.93612 -8.81267 -8.41138 -7.77932 -5.97303 -3.95227 2.91750 3.16677 3.35415 3.47147 3.52502 4.40827 4.43335 4.52038 4.63886 4.77601 4.97435 5.23534 5.26064 5.33052 5.34433 5.34533 5.38118 5.42235 5.51348 5.57857 5.60294 5.62053 5.67395 5.78603 5.83078 5.86410 5.97346 6.02139 6.10538 6.21041 6.27706 6.35077 6.41362 6.51114 6.59063 6.74884 6.86807 6.92134 7.32077 7.44701 7.51063 7.72108 7.80533 7.96060 8.51383 8.63205 9.06148 9.66046 11.16206 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.023445 B = 0.004069 C = 0.003658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1193.976137 B = 6880.003770 C = 7653.406102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.103 4.103 3 C -0.147 4.147 4 C 0.148 3.852 5 H 0.087 0.913 6 C -0.167 4.167 7 N -0.735 5.735 8 C 0.511 3.489 9 O -0.504 6.504 10 C 0.038 3.962 11 N -0.525 5.525 12 C 0.065 3.935 13 C -0.119 4.119 14 C -0.123 4.123 15 C 0.022 3.978 16 H 0.037 0.963 17 C -0.509 4.509 18 H 0.071 0.929 19 C 0.069 3.931 20 N -0.905 5.905 21 Si 0.888 3.112 22 H -0.281 1.281 23 H -0.299 1.299 24 H -0.262 1.262 25 C 0.076 3.924 26 H 0.054 0.946 27 H 0.056 0.944 28 H 0.056 0.944 29 H 0.073 0.927 30 H 0.061 0.939 31 H 0.056 0.944 32 H 0.058 0.942 33 H 0.065 0.935 34 H 0.065 0.935 35 H 0.054 0.946 36 H 0.394 0.606 37 H 0.095 0.905 38 H 0.055 0.945 39 H 0.063 0.937 40 H 0.029 0.971 41 H 0.054 0.946 42 H 0.064 0.936 43 H 0.055 0.945 44 H 0.046 0.954 45 H 0.262 0.738 46 H 0.020 0.980 47 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.486 8.370 -18.463 23.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.122 4.122 3 C -0.205 4.205 4 C 0.043 3.957 5 H 0.105 0.895 6 C -0.225 4.225 7 N -0.389 5.389 8 C 0.296 3.704 9 O -0.377 6.377 10 C -0.093 4.093 11 N -0.250 5.250 12 C -0.063 4.063 13 C -0.157 4.157 14 C -0.161 4.161 15 C 0.003 3.997 16 H 0.055 0.945 17 C -0.547 4.547 18 H 0.089 0.911 19 C -0.132 4.132 20 N -0.544 5.544 21 Si 0.718 3.282 22 H -0.208 1.208 23 H -0.227 1.227 24 H -0.187 1.187 25 C -0.050 4.050 26 H 0.073 0.927 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.091 0.909 30 H 0.080 0.920 31 H 0.075 0.925 32 H 0.077 0.923 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.073 0.927 36 H 0.228 0.772 37 H 0.114 0.886 38 H 0.073 0.927 39 H 0.082 0.918 40 H 0.047 0.953 41 H 0.073 0.927 42 H 0.083 0.917 43 H 0.074 0.926 44 H 0.065 0.935 45 H 0.072 0.928 46 H 0.038 0.962 47 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -11.380 9.049 -17.191 22.515 hybrid contribution -0.295 -1.121 -0.298 1.197 sum -11.675 7.928 -17.489 22.472 Atomic orbital electron populations 1.21831 0.94802 1.01982 1.01792 1.21385 0.96236 0.96824 0.97710 1.21861 1.01510 0.95093 1.02040 1.20937 0.93952 0.82140 0.98661 0.89487 1.22250 0.95392 1.02251 1.02631 1.46089 1.69228 1.14549 1.09040 1.20671 0.77768 0.88437 0.83519 1.90757 1.47109 1.68775 1.31040 1.21897 1.01760 0.92776 0.92903 1.61731 1.17459 1.25599 1.20185 1.22000 0.97377 0.89293 0.97600 1.21641 0.98960 0.99690 0.95370 1.22045 0.93475 1.01013 0.99563 1.19122 0.96290 0.92258 0.92038 0.94473 1.21000 0.90514 1.45683 0.97538 0.91117 1.24971 0.95247 0.94907 0.98036 1.69904 1.17293 1.48272 1.18898 0.86827 0.83015 0.78505 0.79842 1.20796 1.22667 1.18723 1.22193 0.84577 1.00448 0.97822 0.92734 0.92514 0.92501 0.90882 0.91987 0.92484 0.92330 0.91585 0.91620 0.92718 0.77206 0.88645 0.92750 0.91849 0.95325 0.92700 0.91702 0.92629 0.93543 0.92810 0.96185 0.90237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 9.03 37.16 0.34 -0.73 16 2 C -0.10 -0.77 2.55 -90.62 -0.23 -1.00 16 3 C -0.15 -1.02 8.84 37.15 0.33 -0.69 16 4 C 0.15 1.56 2.16 -67.93 -0.15 1.41 16 5 H 0.09 1.13 7.58 -51.93 -0.39 0.74 16 6 C -0.17 -1.84 9.13 37.16 0.34 -1.50 16 7 N -0.73 -7.94 4.38 -53.81 -0.24 -8.17 16 8 C 0.51 7.71 7.32 -10.99 -0.08 7.63 16 9 O -0.50 -10.21 14.37 5.55 0.08 -10.13 16 10 C 0.04 0.53 5.45 -4.98 -0.03 0.50 16 11 N -0.52 -9.56 4.35 -236.12 -1.03 -10.59 16 12 C 0.07 1.05 5.46 -3.83 -0.02 1.02 16 13 C -0.12 -2.15 6.09 -26.65 -0.16 -2.32 16 14 C -0.12 -2.77 4.74 -26.60 -0.13 -2.90 16 15 C 0.02 0.56 1.85 -91.69 -0.17 0.39 16 16 H 0.04 1.01 7.19 -51.93 -0.37 0.64 16 17 C -0.51 -15.00 9.14 -34.44 -0.31 -15.32 16 18 H 0.07 2.24 7.99 -52.48 -0.42 1.82 16 19 C 0.07 2.08 5.45 -17.82 -0.10 1.99 16 20 N -0.90 -28.67 13.96 55.43 0.77 -27.89 16 21 Si 0.89 23.06 24.36 -169.99 -4.14 18.92 16 22 H -0.28 -7.03 6.89 56.52 0.39 -6.64 16 23 H -0.30 -7.77 7.11 56.52 0.40 -7.36 16 24 H -0.26 -6.66 6.53 56.52 0.37 -6.29 16 25 C 0.08 1.67 4.34 -3.84 -0.02 1.66 16 26 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 27 H 0.06 0.40 7.45 -51.93 -0.39 0.02 16 28 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.06 0.42 6.43 -51.93 -0.33 0.09 16 31 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 32 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.07 0.63 6.43 -51.93 -0.33 0.29 16 34 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.39 3.03 8.39 -40.82 -0.34 2.69 16 37 H 0.10 1.04 7.98 -51.93 -0.41 0.63 16 38 H 0.05 0.67 8.12 -51.93 -0.42 0.25 16 39 H 0.06 0.84 8.01 -51.93 -0.42 0.43 16 40 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 42 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 43 H 0.05 1.24 8.14 -51.93 -0.42 0.81 16 44 H 0.05 1.10 3.37 -51.93 -0.17 0.93 16 45 H 0.26 7.80 8.31 -40.82 -0.34 7.46 16 46 H 0.02 0.43 8.14 -51.92 -0.42 0.01 16 47 H 0.08 1.90 6.06 -51.93 -0.31 1.58 16 LS Contribution 354.51 15.07 5.34 5.34 Total: -1.00 -34.31 354.51 -8.17 -42.48 By element: Atomic # 1 Polarization: 8.48 SS G_CDS: -8.58 Total: -0.10 kcal Atomic # 6 Polarization: -9.47 SS G_CDS: -0.39 Total: -9.86 kcal Atomic # 7 Polarization: -46.17 SS G_CDS: -0.49 Total: -46.66 kcal Atomic # 8 Polarization: -10.21 SS G_CDS: 0.08 Total: -10.13 kcal Atomic # 14 Polarization: 23.06 SS G_CDS: -4.14 Total: 18.92 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -34.31 -8.17 -42.48 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397669028.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.877 kcal (2) G-P(sol) polarization free energy of solvation -34.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.482 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds