Wall clock time and date at job start Tue Mar 31 2020 05:30:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52993 * 109.47062 * 2 1 4 4 C 1.52998 * 109.46899 * 119.99875 * 2 1 3 5 5 H 1.09001 * 109.47170 * 300.00146 * 4 2 1 6 6 C 1.53003 * 109.46966 * 179.97438 * 4 2 1 7 7 N 1.46497 * 109.47127 * 60.00119 * 4 2 1 8 8 C 1.34779 * 120.00163 * 204.99641 * 7 4 2 9 9 O 1.21284 * 119.99606 * 0.02562 * 8 7 4 10 10 C 1.50697 * 120.00265 * 180.27353 * 8 7 4 11 11 N 1.46894 * 109.47436 * 173.45934 * 10 8 7 12 12 C 1.46847 * 111.00301 * 169.40141 * 11 10 8 13 13 C 1.53039 * 109.52415 * 185.84283 * 12 11 10 14 14 C 1.53126 * 109.27449 * 300.81595 * 13 12 11 15 15 C 1.53124 * 109.15864 * 57.65819 * 14 13 12 16 16 H 1.08995 * 109.53699 * 62.30394 * 15 14 13 17 17 C 1.50700 * 109.50184 * 182.40032 * 15 14 13 18 18 H 1.08004 * 119.99925 * 119.80016 * 17 15 14 19 19 C 1.37869 * 120.00292 * 299.80456 * 17 15 14 20 20 N 1.31512 * 120.00422 * 179.97438 * 19 17 15 21 21 Si 1.86803 * 120.00050 * 359.97438 * 19 17 15 22 22 H 1.48497 * 109.47430 * 89.99874 * 21 19 17 23 23 H 1.48500 * 109.47046 * 210.00476 * 21 19 17 24 24 H 1.48504 * 109.46942 * 329.99792 * 21 19 17 25 25 C 1.46847 * 111.00173 * 293.61382 * 11 10 8 26 26 H 1.09003 * 109.46977 * 59.99876 * 1 2 3 27 27 H 1.08998 * 109.47332 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47329 * 300.00076 * 1 2 3 29 29 H 1.08998 * 109.46598 * 239.99886 * 2 1 3 30 30 H 1.09005 * 109.47377 * 180.02562 * 3 2 1 31 31 H 1.09003 * 109.47326 * 299.99911 * 3 2 1 32 32 H 1.08995 * 109.47528 * 59.99914 * 3 2 1 33 33 H 1.08997 * 109.46633 * 60.00211 * 6 4 2 34 34 H 1.09001 * 109.46999 * 179.97438 * 6 4 2 35 35 H 1.09001 * 109.47611 * 300.00262 * 6 4 2 36 36 H 0.97001 * 120.00008 * 24.99738 * 7 4 2 37 37 H 1.09006 * 109.47110 * 293.46294 * 10 8 7 38 38 H 1.09005 * 109.46937 * 53.45839 * 10 8 7 39 39 H 1.08996 * 109.45875 * 305.85218 * 12 11 10 40 40 H 1.08992 * 109.46460 * 65.82544 * 12 11 10 41 41 H 1.08994 * 109.50626 * 180.88030 * 13 12 11 42 42 H 1.08997 * 109.54011 * 60.77303 * 13 12 11 43 43 H 1.08995 * 109.52557 * 297.75041 * 14 13 12 44 44 H 1.08999 * 109.57196 * 177.59079 * 14 13 12 45 45 H 0.97003 * 120.00529 * 179.97438 * 20 19 17 46 46 H 1.09012 * 109.46038 * 294.17527 * 25 11 10 47 47 H 1.08993 * 109.46374 * 54.13657 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7212 1.2493 5 1 1.6766 -0.2074 2.1392 6 6 3.5700 -0.7218 1.2490 7 7 1.5516 -2.1024 1.2493 8 6 1.4229 -2.7717 2.4120 9 8 1.7109 -2.2303 3.4584 10 6 0.9264 -4.1946 2.4115 11 7 1.0235 -4.7476 3.7689 12 6 0.3226 -6.0344 3.8643 13 6 0.3194 -6.5085 5.3194 14 6 1.7638 -6.6555 5.8062 15 6 2.4854 -5.3139 5.6511 16 1 1.9998 -4.5645 6.2760 17 6 3.9243 -5.4649 6.0729 18 1 4.7175 -5.2673 5.3670 19 6 4.2282 -5.8554 7.3597 20 7 5.4838 -5.9876 7.7277 21 14 2.8563 -6.1966 8.5808 22 1 2.4691 -7.6281 8.5031 23 1 3.3273 -5.8850 9.9543 24 1 1.6819 -5.3477 8.2559 25 6 2.4256 -4.8745 4.1865 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8932 -0.5139 -0.8900 30 1 3.1300 1.4425 -0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9563 0.8899 33 1 3.9336 0.3057 1.2487 34 1 3.9333 -1.2352 2.1392 35 1 3.9330 -1.2359 0.3590 36 1 1.3209 -2.5353 0.4124 37 1 -0.1129 -4.2166 2.0836 38 1 1.5346 -4.7913 1.7317 39 1 -0.7044 -5.9150 3.5191 40 1 0.8309 -6.7718 3.2432 41 1 -0.1872 -7.4711 5.3875 42 1 -0.2010 -5.7786 5.9395 43 1 2.2731 -7.4140 5.2118 44 1 1.7672 -6.9518 6.8552 45 1 5.6977 -6.2620 8.6332 46 1 2.9242 -5.6174 3.5637 47 1 2.9262 -3.9127 4.0751 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397669028.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:42 Heat of formation + Delta-G solvation = -71.769756 kcal Electronic energy + Delta-G solvation = -23367.396417 eV Core-core repulsion = 20162.450131 eV Total energy + Delta-G solvation = -3204.946285 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.11822 -39.62412 -37.96171 -35.54680 -34.24282 -33.81501 -31.98478 -31.03386 -28.72054 -27.56735 -26.89292 -24.85387 -23.76490 -22.86548 -21.42503 -20.92834 -20.49675 -18.86860 -17.88982 -17.59009 -16.99145 -16.45263 -15.90851 -15.62513 -15.40985 -15.31090 -15.12335 -14.82177 -14.59509 -14.33665 -14.20951 -13.84809 -13.71823 -13.41393 -13.12222 -13.03850 -12.91914 -12.84375 -12.67266 -12.44225 -12.19340 -11.96631 -11.91398 -11.75402 -11.73225 -11.44568 -11.41940 -11.10599 -10.82735 -10.75647 -10.49655 -9.99388 -9.15246 -8.32459 -6.35583 1.26019 1.34378 1.46206 1.76463 2.17365 2.31552 3.03201 3.10642 3.68878 3.92267 3.97533 4.02667 4.12835 4.16055 4.22055 4.39495 4.40728 4.44017 4.49882 4.53820 4.61450 4.68791 4.75051 4.80933 4.83740 4.84773 4.96092 4.98141 5.02170 5.05768 5.08287 5.15200 5.15712 5.25320 5.30888 5.42033 5.46820 5.48214 5.61925 5.66168 5.75369 6.12148 6.21258 6.33731 6.70501 6.72207 7.29609 7.44609 8.84852 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.023445 B = 0.004069 C = 0.003658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1193.976137 B = 6880.003770 C = 7653.406102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.092 4.092 3 C -0.148 4.148 4 C 0.147 3.853 5 H 0.056 0.944 6 C -0.163 4.163 7 N -0.714 5.714 8 C 0.505 3.495 9 O -0.568 6.568 10 C 0.039 3.961 11 N -0.543 5.543 12 C 0.065 3.935 13 C -0.115 4.115 14 C -0.122 4.122 15 C 0.022 3.978 16 H 0.011 0.989 17 C -0.520 4.520 18 H 0.027 0.973 19 C 0.012 3.988 20 N -0.951 5.951 21 Si 0.954 3.046 22 H -0.258 1.258 23 H -0.298 1.298 24 H -0.255 1.255 25 C 0.094 3.906 26 H 0.071 0.929 27 H 0.060 0.940 28 H 0.040 0.960 29 H 0.093 0.907 30 H 0.062 0.938 31 H 0.073 0.927 32 H 0.048 0.952 33 H 0.079 0.921 34 H 0.021 0.979 35 H 0.071 0.929 36 H 0.415 0.585 37 H 0.139 0.861 38 H 0.078 0.922 39 H 0.106 0.894 40 H 0.041 0.959 41 H 0.091 0.909 42 H 0.057 0.943 43 H 0.053 0.947 44 H 0.034 0.966 45 H 0.266 0.734 46 H 0.016 0.984 47 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.778 7.501 -20.894 26.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.111 4.111 3 C -0.206 4.206 4 C 0.042 3.958 5 H 0.074 0.926 6 C -0.221 4.221 7 N -0.368 5.368 8 C 0.291 3.709 9 O -0.445 6.445 10 C -0.091 4.091 11 N -0.268 5.268 12 C -0.062 4.062 13 C -0.153 4.153 14 C -0.159 4.159 15 C 0.003 3.997 16 H 0.029 0.971 17 C -0.559 4.559 18 H 0.045 0.955 19 C -0.185 4.185 20 N -0.591 5.591 21 Si 0.781 3.219 22 H -0.184 1.184 23 H -0.225 1.225 24 H -0.180 1.180 25 C -0.034 4.034 26 H 0.090 0.910 27 H 0.079 0.921 28 H 0.060 0.940 29 H 0.111 0.889 30 H 0.081 0.919 31 H 0.092 0.908 32 H 0.067 0.933 33 H 0.098 0.902 34 H 0.041 0.959 35 H 0.090 0.910 36 H 0.252 0.748 37 H 0.157 0.843 38 H 0.096 0.904 39 H 0.124 0.876 40 H 0.059 0.941 41 H 0.109 0.891 42 H 0.075 0.925 43 H 0.072 0.928 44 H 0.052 0.948 45 H 0.075 0.925 46 H 0.034 0.966 47 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -14.698 8.171 -19.705 25.905 hybrid contribution 0.823 -0.763 0.357 1.177 sum -13.875 7.408 -19.349 24.935 Atomic orbital electron populations 1.21831 0.94297 1.02297 1.01879 1.21333 0.96537 0.96856 0.96355 1.21881 1.01609 0.94723 1.02398 1.20974 0.93546 0.82003 0.99283 0.92560 1.22215 0.95864 1.02816 1.01226 1.45913 1.67544 1.14491 1.08850 1.21109 0.77025 0.89188 0.83556 1.90744 1.50131 1.70179 1.33475 1.22060 1.04694 0.91444 0.90942 1.61565 1.14468 1.27344 1.23395 1.22130 0.99464 0.88257 0.96380 1.21645 0.95449 1.01609 0.96610 1.21916 0.96497 0.98481 0.99049 1.19007 0.93343 0.93610 0.93737 0.97055 1.21331 0.92195 1.45185 0.97140 0.95486 1.25861 0.97805 0.94699 1.00097 1.70050 1.19648 1.49762 1.19686 0.85751 0.79770 0.79578 0.76784 1.18384 1.22537 1.17988 1.21725 0.87445 0.98349 0.95846 0.91025 0.92095 0.94048 0.88865 0.91896 0.90794 0.93326 0.90202 0.95922 0.90986 0.74835 0.84349 0.90435 0.87572 0.94096 0.89103 0.92459 0.92789 0.94817 0.92509 0.96557 0.93378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.77 9.03 71.98 0.65 -1.12 16 2 C -0.09 -1.19 2.55 -10.80 -0.03 -1.22 16 3 C -0.15 -1.81 8.84 71.98 0.64 -1.17 16 4 C 0.15 3.05 2.16 44.99 0.10 3.15 16 5 H 0.06 1.55 7.58 -2.39 -0.02 1.53 16 6 C -0.16 -3.65 9.13 71.98 0.66 -2.99 16 7 N -0.71 -14.48 4.38 -442.53 -1.94 -16.42 16 8 C 0.50 15.01 7.32 87.66 0.64 15.65 16 9 O -0.57 -24.09 14.37 -3.04 -0.04 -24.14 16 10 C 0.04 0.97 5.45 85.56 0.47 1.44 16 11 N -0.54 -18.79 4.35 -900.95 -3.92 -22.70 16 12 C 0.06 1.80 5.46 86.33 0.47 2.27 16 13 C -0.12 -3.79 6.09 30.65 0.19 -3.60 16 14 C -0.12 -5.33 4.74 30.68 0.15 -5.19 16 15 C 0.02 1.15 1.85 -11.49 -0.02 1.13 16 16 H 0.01 0.64 7.19 -2.39 -0.02 0.62 16 17 C -0.52 -32.29 9.14 25.60 0.23 -32.06 16 18 H 0.03 1.84 7.99 -2.91 -0.02 1.82 16 19 C 0.01 0.75 5.45 84.65 0.46 1.21 16 20 N -0.95 -62.68 13.96 21.44 0.30 -62.38 16 21 Si 0.95 48.50 24.36 68.60 1.67 50.18 16 22 H -0.26 -12.12 6.89 99.48 0.69 -11.44 16 23 H -0.30 -14.94 7.11 99.48 0.71 -14.23 16 24 H -0.26 -12.58 6.53 99.48 0.65 -11.93 16 25 C 0.09 4.23 4.34 86.32 0.37 4.60 16 26 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 27 H 0.06 0.68 7.45 -2.39 -0.02 0.67 16 28 H 0.04 0.64 8.14 -2.39 -0.02 0.62 16 29 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.06 0.75 6.43 -2.38 -0.02 0.74 16 31 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 32 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 33 H 0.08 1.53 6.43 -2.39 -0.02 1.51 16 34 H 0.02 0.68 8.14 -2.39 -0.02 0.67 16 35 H 0.07 1.33 8.14 -2.39 -0.02 1.32 16 36 H 0.41 5.08 8.39 -92.71 -0.78 4.30 16 37 H 0.14 2.27 7.98 -2.38 -0.02 2.26 16 38 H 0.08 1.62 8.12 -2.38 -0.02 1.60 16 39 H 0.11 2.14 8.01 -2.39 -0.02 2.12 16 40 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 41 H 0.09 2.36 8.14 -2.39 -0.02 2.34 16 42 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 43 H 0.05 2.34 8.14 -2.39 -0.02 2.32 16 44 H 0.03 1.54 3.37 -2.39 -0.01 1.53 16 45 H 0.27 16.34 8.31 -92.71 -0.77 15.57 16 46 H 0.02 0.73 8.14 -2.38 -0.02 0.71 16 47 H 0.05 2.44 6.06 -2.39 -0.01 2.43 16 Total: -1.00 -81.57 354.51 1.12 -80.46 By element: Atomic # 1 Polarization: 12.84 SS G_CDS: 0.07 Total: 12.91 kcal Atomic # 6 Polarization: -22.88 SS G_CDS: 4.97 Total: -17.90 kcal Atomic # 7 Polarization: -95.94 SS G_CDS: -5.56 Total: -101.50 kcal Atomic # 8 Polarization: -24.09 SS G_CDS: -0.04 Total: -24.14 kcal Atomic # 14 Polarization: 48.50 SS G_CDS: 1.67 Total: 50.18 kcal Total: -81.57 1.12 -80.46 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397669028.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.686 kcal (2) G-P(sol) polarization free energy of solvation -81.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.455 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds